Rmu_sc0001200.1_g000052

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001200.1
OG0000153
Physical Location & Seq
Forward (+)
325362 .. 329696
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001200.1_g000052.1.cds

Sequence Viewer

Length: 2514 bp
atggctcctgaggtatgtagtctagtcgatcatcattttgtgtttgaggatgaccttaaaaaggagtttagaggcaattttgaagcctccagagatgtcattcttaagcagatttccaggctactgattgagaggagggattatccggcagtccccataaactttgagtatccctacggtttagttacagggtggccacaatgggttgacaatgagctaaaagacgaggccacgagaattagactttcagaggctgctgtcctttcttctgtattcatcactgctcgctgtgatattaacagggatgtggagtctcttcgtcatgtagttcgaagatggaatcctcacacgcatacctttgtttgcgagtggggagagtttacccctactttggaggacgtcttcaacattatgaggcttcccattaccggttcagtcaacccccttggttttgattttgactctaagaagttgcaggttcttctagaaggggcctccagtgtcaaaggatgtaagcgccgtttttcaaattgggtgaagcatttttggggagttactgaaaatggggtgtttgcctcaggtaaaggcttcaattctggttgccgtctggaagcaatgctatctctgtggctaacgaaatttgtcttcattgagttctcttatgagtgtattaaagagcgcgtgtttcccttggcaattgcaatagcagtcggcagtaggtttcctttgggaccaatgtttcttggtcatgtctatcgtctgcttgactacatcgttgttgacgagttagagagcgttggtcggtgtggagttactacattggtttctaccacttttctgcaattatttatctgggaacggttcaaaggtctaaaggtggagcccctgaccatgagtctatcttcggaattgtacaacaacgacaaggaaggcagcaagcaagcacatactgaatatttgccgctggtacttcctttgctgtgtcgctggttcaaaaggagacaagataagatagtgtttgccccgagcatgttggatgatgtaaataatttcatctggcagccctatctccagccttctgagtttgagaccttttcattttctggtagagaagagcagtgtgctacagctctcggtcgggttgagctctacttgactatttgcccaaattttatcccatccatcagtgaggataaggaagacttggatattttccctgttgtttattctcctgataaagtgatgcagcaacttggttgccttcaagatgttccctcgcctccacctcgctctcttaactctaagattataaatttttctcatatggagcgtagatgtgttcttgatttctctggcagaattgcggacttcccatctcagttgccagagaatgctgcaaatgctaacgcttcccatgcttatagttgctattggaggggggtgttgtgcaggttcaggctctttgtggaagccggcagtcctcagccagagttgggacctattaccagcagtaggttggctagccccaaggctgtattgacttatgttgaaaagcataatctcacctatactgaagtgtacagtgatggtactagaaagattgtcggctatttaaagggttttgaagctaagagggagaagggagagggaaggaagtgtgataagaagacgggtgataagggtaatgcaaaggaacacaacactcagaagcctattcggcgcttcaagcccaaggtggattttgataagtttatgcatatgacccaacatggagtcaaattgatgattcccccaagcatgccgcttcaaaagaacaaggaggtaaagaagaaaacatcctcaacctcccgagcaagtggtacttctcatgcaaagcaagcaaatgctacaagttttgaagtgaagaaaggggtgaaaaggaaggctggtgtagattttgatgtccctcttcgtcgaagcaatcgtgtaaggtcaatgagttctccttctcctcgtggtcctccagtttatcttgagttgtctgagtctgatcacggagaggattctcaagggggtccaactgattcttctaaagatgaccatactaatttttcaaaagaggtatctgatcatctgcctgaagtgcctcccataattaatcaagatgggattgatacgatgactatcattgagactcaaagtcttgacccaagcttgcctgctaaagggtcaactagcatggctgatgtcacaccagtattgagtagaggcaccgctgattttgctgggatgaaaattcctttagagttagcgggtcccttggctagatttgctgagagatatagtggtcttaatgttggcttcctgctggattccttaaaacaaggtgcaaagcacttctttggttatatgatgaggtctgaaggatcagagaaccagtatgttaaaattcgtggtctgcaggagatggtttcacaaaccaataaggacttgcacgtcttgagggagagttgcgcaaggctcaagaggatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

837

Amino Acids

94.66

Weight (kDa)

8.57

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1310
AasI GACNNNNNNGTC 1 cut(s) 2474
AatII GACGTC 1 cut(s) 402
Acc16I TGCGCA 1 cut(s) 2494
Acc36I ACCTGC 2 cut(s) 466, 1440
AccB1I GGYRCC 1 cut(s) 2249
AccII CGCG 1 cut(s) 681
AciI CCGC 5 cut(s) 962, 1364, 1802, 2253, 2291
AclWI GGATC 1 cut(s) 2413
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 5 cut(s) 638, 1168, 1312, 2274, 2427
AcuI CTGAAG 3 cut(s) 1593, 2139, 2421
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 5 cut(s) 914, 969, 1580, 1591, 1861
AfiI CCNNNNNNNGG 6 cut(s) 61, 391, 428, 1493, 1512, 2204
AflII CTTAAG 1 cut(s) 104
AgeI ACCGGT 1 cut(s) 428
AhdI GACNNNNNGTC 2 cut(s) 894, 2178
AjiI CACGTC 1 cut(s) 2476
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 2050, 2082
AluBI AGCT 5 cut(s) 217, 1130, 1147, 1628, 2193
AluI AGCT 5 cut(s) 217, 1130, 1147, 1628, 2193
Alw21I GWGCWC 1 cut(s) 1149
Alw26I GTCTC 4 cut(s) 318, 994, 1082, 2165
AlwI GGATC 1 cut(s) 2413
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 2 cut(s) 1024, 1848
AoxI GGCC 3 cut(s) 194, 228, 492
ApeKI GCWGC 5 cut(s) 254, 933, 1060, 1246, 1394
ApoI RAATTY 5 cut(s) 638, 1168, 1312, 2274, 2427
AseI ATTAAT 1 cut(s) 2136
AsiGI ACCGGT 1 cut(s) 428
AspLEI GCGC 4 cut(s) 519, 681, 1722, 2495
AspS9I GGNCC 6 cut(s) 492, 731, 1496, 1997, 2054, 2294
AsuHPI GGTGA 4 cut(s) 547, 1555, 1685, 1924
AsuII TTCGAA 1 cut(s) 331
AsuNHI GCTAGC 1 cut(s) 1520
AvaI CYCGRG 2 cut(s) 1024, 1848
AvaII GGWCC 5 cut(s) 731, 1496, 1997, 2054, 2294
AxyI CCTNAGG 2 cut(s) 9, 577
BalI TGGCCA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 2249
BanII GRGCYC 2 cut(s) 885, 1149
BauI CACGAG 2 cut(s) 232, 1992
BbsI GAAGAC 4 cut(s) 394, 637, 1206, 1673
Bbv12I GWGCWC 1 cut(s) 1149
BbvCI CCTCAGC 1 cut(s) 1482
BbvI GCAGC 5 cut(s) 241, 945, 1072, 1258, 1381
BccI CCATC 7 cut(s) 330, 1186, 1190, 1381, 1580, 2138, 2440
BceAI ACGGC 2 cut(s) 504, 588
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 2 cut(s) 2029, 2107
BcoDI GTCTC 4 cut(s) 318, 994, 1082, 2165
BfaI CTAG 6 cut(s) 23, 485, 1521, 1593, 2214, 2304
BfmI CTRYAG 2 cut(s) 1125, 2438
BfoI RGCGCY 2 cut(s) 520, 1723
BfrI CTTAAG 1 cut(s) 104
BfuAI ACCTGC 2 cut(s) 466, 1440
BfuI GTATCC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 1717
BisI GCNGC 7 cut(s) 255, 934, 962, 1061, 1247, 1395, 1802
BlsI GCNGC 7 cut(s) 256, 935, 963, 1062, 1248, 1396, 1803
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 5 cut(s) 731, 1496, 1997, 2054, 2294
BmeRI GACNNNNNGTC 2 cut(s) 894, 2178
BmeT110I CYCGRG 2 cut(s) 1024, 1848
BmgBI CACGTC 1 cut(s) 2476
BmgT120I GGNCC 6 cut(s) 492, 731, 1496, 1997, 2054, 2294
BmiI GGNNCC 9 cut(s) 6, 493, 732, 882, 1497, 2055, 2251, 2295, 2296
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 1233
BmtI GCTAGC 1 cut(s) 1524
BpiI GAAGAC 4 cut(s) 394, 637, 1206, 1673
BpmI CTGGAG 4 cut(s) 73, 481, 1055, 1986
Bpu10I CCTNAGC 1 cut(s) 1482
Bpu14I TTCGAA 1 cut(s) 331
BpuEI CTTGAG 4 cut(s) 2031, 2033, 2486, 2500
BsaBI GATNNNNATC 1 cut(s) 2162
BsaHI GRCGYC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 1082
BsaJI CCNNGG 5 cut(s) 445, 690, 1527, 1731, 2298
BsaWI WCCGGW 1 cut(s) 428
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 391, 428, 1493, 1512, 2204
Bse118I RCCGGY 2 cut(s) 428, 1472
Bse1I ACTGG 4 cut(s) 498, 2003, 2234, 2416
Bse21I CCTNAGG 2 cut(s) 9, 577
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 2162
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 5 cut(s) 445, 690, 1527, 1731, 2298
BseGI GGATG 7 cut(s) 55, 310, 515, 1042, 1178, 1835, 2274
BseJI GATNNNNATC 1 cut(s) 2162
BseLI CCNNNNNNNGG 6 cut(s) 61, 391, 428, 1493, 1512, 2204
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 7 cut(s) 591, 1071, 1391, 1496, 1718, 2013, 2304
BseNI ACTGG 4 cut(s) 498, 2003, 2234, 2416
BseRI GAGGAG 2 cut(s) 148, 1980
BseXI GCAGC 5 cut(s) 241, 945, 1072, 1258, 1381
BseYI CCCAGC 1 cut(s) 2264
BsgI GTGCAG 1 cut(s) 1468
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 1138
BshFI GGCC 3 cut(s) 196, 230, 494
BshNI GGYRCC 1 cut(s) 2249
BshTI ACCGGT 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 1138
BsiHKAI GWGCWC 1 cut(s) 1149
BsiHKCI CYCGRG 2 cut(s) 1024, 1848
BsiSI CCGG 3 cut(s) 146, 429, 1473
BslFI GGGAC 5 cut(s) 137, 744, 1509, 1928, 2280
BslI CCNNNNNNNGG 6 cut(s) 61, 391, 428, 1493, 1512, 2204
BsmAI GTCTC 4 cut(s) 318, 994, 1082, 2165
BsmFI GGGAC 5 cut(s) 137, 744, 1509, 1928, 2280
BsmI GAATGC 1 cut(s) 1396
BsnI GGCC 3 cut(s) 196, 230, 494
Bso31I GGTCTC 1 cut(s) 1082
BsoBI CYCGRG 2 cut(s) 1024, 1848
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 885, 1149
Bsp1407I TGTACA 2 cut(s) 912, 1578
Bsp143I GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
BspACI CCGC 5 cut(s) 962, 1364, 1802, 2253, 2291
BspANI GGCC 3 cut(s) 196, 230, 494
BspCNI CTCAG 7 cut(s) 590, 1072, 1390, 1495, 1717, 2014, 2305
BspFNI CGCG 1 cut(s) 681
BspLI GGNNCC 9 cut(s) 6, 493, 732, 882, 1497, 2055, 2251, 2295, 2296
BspMAI CTGCAG 1 cut(s) 2442
BspMI ACCTGC 2 cut(s) 466, 1440
BspOI GCTAGC 1 cut(s) 1524
BspPI GGATC 1 cut(s) 2413
BspQI GCTCTTC 1 cut(s) 1107
BspT104I TTCGAA 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 2249
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 1082
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 2 cut(s) 428, 1472
BsrGI TGTACA 2 cut(s) 912, 1578
BsrI ACTGG 4 cut(s) 498, 2003, 2234, 2416
BssAI RCCGGY 2 cut(s) 428, 1472
BssECI CCNNGG 5 cut(s) 445, 690, 1527, 1731, 2298
BssMI GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
BssNI GRCGYC 1 cut(s) 399
BssSI CACGAG 2 cut(s) 232, 1992
BssT1I CCWWGG 5 cut(s) 445, 690, 1527, 1731, 2298
Bst2BI CACGAG 2 cut(s) 232, 1992
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 179, 861, 1583
Bst6I CTCTTC 3 cut(s) 321, 1107, 1953
BstACI GRCGYC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 104
BstAUI TGTACA 2 cut(s) 912, 1578
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 9 cut(s) 286, 938, 942, 1474, 1522, 1799, 1878, 2195, 2199
BstENI CCTNNNNNAGG 2 cut(s) 59, 2202
BstF5I GGATG 7 cut(s) 55, 310, 515, 1042, 1178, 1835, 2274
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 2 cut(s) 520, 1723
BstHHI GCGC 4 cut(s) 519, 681, 1722, 2495
BstKTI GATC 5 cut(s) 31, 2032, 2110, 2408, 2511
BstMAI GTCTC 4 cut(s) 318, 994, 1082, 2165
BstMBI GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
BstMCI CGRYCG 1 cut(s) 1138
BstMWI GCNNNNNNNGC 8 cut(s) 1400, 1415, 1717, 1726, 1877, 2122, 2261, 2309
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 2 cut(s) 1033, 1801
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 1125, 2438
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 241, 945, 1072, 1258, 1381
BstV2I GAAGAC 4 cut(s) 394, 637, 1206, 1673
BstX2I RGATCY 1 cut(s) 2508
BstYI RGATCY 1 cut(s) 2508
Bsu36I CCTNAGG 2 cut(s) 9, 577
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 196, 230, 494
BtrI CACGTC 1 cut(s) 2476
BtsCI GGATG 7 cut(s) 55, 310, 515, 1042, 1178, 1835, 2274
BtsI GCAGTG 2 cut(s) 279, 1124
BtsIMutI CAGTG 5 cut(s) 279, 505, 1124, 1192, 1588
BveI ACCTGC 2 cut(s) 466, 1440
Cac8I GCNNGC 9 cut(s) 286, 938, 942, 1474, 1522, 1799, 1878, 2195, 2199
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 4 cut(s) 519, 681, 1722, 2495
Cfr10I RCCGGY 2 cut(s) 428, 1472
Cfr13I GGNCC 6 cut(s) 492, 731, 1496, 1997, 2054, 2294
Csp6I GTAC 5 cut(s) 913, 968, 1579, 1590, 1860
CspAI ACCGGT 1 cut(s) 428
CviAII CATG 9 cut(s) 323, 749, 892, 1030, 1415, 1769, 1798, 1868, 2218
CviQI GTAC 5 cut(s) 913, 968, 1579, 1590, 1860
DpnI GATC 5 cut(s) 30, 2031, 2109, 2407, 2510
DpnII GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
DraI TTTAAA 1 cut(s) 1614
DrdI GACNNNNNNGTC 1 cut(s) 2474
DriI GACNNNNNGTC 2 cut(s) 894, 2178
DseDI GACNNNNNNGTC 1 cut(s) 2474
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 3 cut(s) 321, 1107, 1953
Eam1105I GACNNNNNGTC 2 cut(s) 894, 2178
EarI CTCTTC 3 cut(s) 321, 1107, 1953
Ecl136II GAGCTC 1 cut(s) 1147
Eco130I CCWWGG 5 cut(s) 445, 690, 1527, 1731, 2298
Eco24I GRGCYC 2 cut(s) 885, 1149
Eco31I GGTCTC 1 cut(s) 1082
Eco47I GGWCC 5 cut(s) 731, 1496, 1997, 2054, 2294
Eco53kI GAGCTC 1 cut(s) 1147
Eco57I CTGAAG 3 cut(s) 1593, 2139, 2421
Eco81I CCTNAGG 2 cut(s) 9, 577
Eco88I CYCGRG 2 cut(s) 1024, 1848
EcoICRI GAGCTC 1 cut(s) 1147
EcoNI CCTNNNNNAGG 2 cut(s) 59, 2202
EcoO109I RGGNCCY 3 cut(s) 492, 1496, 2294
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 5 cut(s) 445, 690, 1527, 1731, 2298
EcoT22I ATGCAT 1 cut(s) 1758
EcoT38I GRGCYC 2 cut(s) 885, 1149
ErhI CCWWGG 5 cut(s) 445, 690, 1527, 1731, 2298
FaeI CATG 9 cut(s) 326, 752, 895, 1033, 1418, 1772, 1801, 1871, 2221
FalI AAGNNNNNCTT 6 cut(s) 1187, 1219, 1846, 1878, 2363, 2395
FaqI GGGAC 5 cut(s) 137, 744, 1509, 1928, 2280
FatI CATG 9 cut(s) 322, 748, 891, 1029, 1414, 1768, 1797, 1867, 2217
FauI CCCGC 1 cut(s) 2284
FauNDI CATATG 2 cut(s) 1323, 1758
FbaI TGATCA 2 cut(s) 2029, 2107
Fnu4HI GCNGC 7 cut(s) 255, 934, 962, 1061, 1247, 1395, 1802
FokI GGATG 7 cut(s) 62, 317, 522, 1049, 1165, 1822, 2281
FriOI GRGCYC 2 cut(s) 885, 1149
Fsp4HI GCNGC 7 cut(s) 255, 934, 962, 1061, 1247, 1395, 1802
FspBI CTAG 6 cut(s) 23, 485, 1521, 1593, 2214, 2304
FspI TGCGCA 1 cut(s) 2494
GlaI GCGC 4 cut(s) 518, 680, 1721, 2494
GluI GCNGC 7 cut(s) 255, 934, 962, 1061, 1247, 1395, 1802
GsaI CCCAGC 1 cut(s) 2268
GsuI CTGGAG 4 cut(s) 73, 481, 1055, 1986
HaeII RGCGCY 2 cut(s) 520, 1723
HaeIII GGCC 3 cut(s) 196, 230, 494
HapII CCGG 3 cut(s) 146, 429, 1473
HhaI GCGC 4 cut(s) 519, 681, 1722, 2495
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 9 cut(s) 326, 752, 895, 1033, 1418, 1772, 1801, 1871, 2221
Hin6I GCGC 4 cut(s) 517, 679, 1720, 2493
HinP1I GCGC 4 cut(s) 517, 679, 1720, 2493
HincII GTYRAC 4 cut(s) 208, 439, 781, 2211
HindII GTYRAC 4 cut(s) 208, 439, 781, 2211
HindIII AAGCTT 1 cut(s) 2191
HpaII CCGG 3 cut(s) 146, 429, 1473
HphI GGTGA 4 cut(s) 547, 1555, 1685, 1924
Hpy166II GTNNAC 6 cut(s) 208, 381, 439, 781, 1579, 2211
Hpy188I TCNGA 9 cut(s) 250, 907, 1081, 1707, 2023, 2029, 2107, 2401, 2410
Hpy8I GTNNAC 6 cut(s) 208, 381, 439, 781, 1579, 2211
Hpy99I CGWCG 1 cut(s) 1956
HpyAV CCTTC 9 cut(s) 482, 923, 1086, 1271, 1633, 1644, 1915, 1995, 2396
HpyCH4III ACNGT 3 cut(s) 179, 861, 1583
HpyCH4IV ACGT 2 cut(s) 399, 2475
HpyF10VI GCNNNNNNNGC 8 cut(s) 1400, 1415, 1717, 1726, 1877, 2122, 2261, 2309
HpySE526I ACGT 2 cut(s) 399, 2475
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 9 cut(s) 326, 752, 895, 1033, 1418, 1772, 1801, 1871, 2221
HspAI GCGC 4 cut(s) 517, 679, 1720, 2493
KflI GGGWCCC 1 cut(s) 2294
KroI GCCGGC 1 cut(s) 1472
KroNI GCCGGC 1 cut(s) 1474
Ksp22I TGATCA 2 cut(s) 2029, 2107
Kzo9I GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 3 cut(s) 10, 880, 1327
Lsp1109I GCAGC 5 cut(s) 241, 945, 1072, 1258, 1381
LweI GCATC 1 cut(s) 1233
MaeI CTAG 6 cut(s) 23, 485, 1521, 1593, 2214, 2304
MaeII ACGT 2 cut(s) 399, 2475
MaeIII GTNAC 4 cut(s) 184, 553, 811, 2227
MalI GATC 5 cut(s) 30, 2031, 2109, 2407, 2510
MboI GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 2508
MhlI GDGCHC 2 cut(s) 885, 1149
MlsI TGGCCA 1 cut(s) 196
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 6 cut(s) 320, 455, 904, 1782, 2033, 2167
MmeI TCCRAC 2 cut(s) 1014, 2081
Mox20I TGGCCA 1 cut(s) 196
Mph1103I ATGCAT 1 cut(s) 1758
MroNI GCCGGC 1 cut(s) 1472
MscI TGGCCA 1 cut(s) 196
Msp20I TGGCCA 1 cut(s) 196
MspA1I CMGCKG 2 cut(s) 964, 2255
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 3 cut(s) 146, 429, 1473
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 1396
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 8 cut(s) 1400, 1415, 1717, 1726, 1877, 2122, 2261, 2309
NaeI GCCGGC 1 cut(s) 1474
NdeI CATATG 2 cut(s) 1323, 1758
NdeII GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
NgoMIV GCCGGC 1 cut(s) 1472
NheI GCTAGC 1 cut(s) 1520
NlaIII CATG 9 cut(s) 326, 752, 895, 1033, 1418, 1772, 1801, 1871, 2221
NlaIV GGNNCC 9 cut(s) 6, 493, 732, 882, 1497, 2055, 2251, 2295, 2296
NmuCI GTSAC 1 cut(s) 2227
NsbI TGCGCA 1 cut(s) 2494
NsiI ATGCAT 1 cut(s) 1758
NspI RCATGY 2 cut(s) 1033, 1801
NspV TTCGAA 1 cut(s) 331
PaeI GCATGC 1 cut(s) 1801
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 780, 1960
PctI GAATGC 1 cut(s) 1396
PdiI GCCGGC 1 cut(s) 1474
PfeI GAWTC 5 cut(s) 340, 1786, 2042, 2063, 2351
PinAI ACCGGT 1 cut(s) 428
PkrI GCNGC 7 cut(s) 256, 935, 963, 1062, 1248, 1396, 1803
PleI GAGTC 6 cut(s) 319, 455, 903, 1781, 2032, 2167
PpsI GAGTC 6 cut(s) 319, 455, 903, 1781, 2032, 2167
PpuMI RGGWCCY 2 cut(s) 1496, 2294
PshBI ATTAAT 1 cut(s) 2136
PsiI TTATAA 1 cut(s) 1310
Psp124BI GAGCTC 1 cut(s) 1149
Psp5II RGGWCCY 2 cut(s) 1496, 2294
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 2264
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 9 cut(s) 6, 493, 732, 882, 1497, 2055, 2251, 2295, 2296
PspPI GGNCC 6 cut(s) 492, 731, 1496, 1997, 2054, 2294
PspPPI RGGWCCY 2 cut(s) 1496, 2294
PstI CTGCAG 1 cut(s) 2442
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 2508
RsaI GTAC 5 cut(s) 914, 969, 1580, 1591, 1861
RsaNI GTAC 5 cut(s) 913, 968, 1579, 1590, 1860
SacI GAGCTC 1 cut(s) 1149
SapI GCTCTTC 1 cut(s) 1107
SatI GCNGC 7 cut(s) 255, 934, 962, 1061, 1247, 1395, 1802
Sau3AI GATC 5 cut(s) 28, 2029, 2107, 2405, 2508
Sau96I GGNCC 6 cut(s) 492, 731, 1496, 1997, 2054, 2294
SchI GAGTC 6 cut(s) 320, 455, 904, 1782, 2033, 2167
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 885, 1149
SfaNI GCATC 1 cut(s) 1233
SfcI CTRYAG 2 cut(s) 1125, 2438
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 5 cut(s) 731, 1496, 1997, 2054, 2294
SmlI CTYRAG 5 cut(s) 104, 2012, 2046, 2479, 2501
SmoI CTYRAG 5 cut(s) 104, 2012, 2046, 2479, 2501
SphI GCATGC 1 cut(s) 1801
SsiI CCGC 5 cut(s) 962, 1364, 1802, 2253, 2291
SspI AATATT 1 cut(s) 956
SspMI CTAG 6 cut(s) 23, 485, 1521, 1593, 2214, 2304
SstI GAGCTC 1 cut(s) 1149
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 5 cut(s) 445, 690, 1527, 1731, 2298
TaaI ACNGT 3 cut(s) 179, 861, 1583
TaiI ACGT 2 cut(s) 402, 2478
TaqI TCGA 3 cut(s) 27, 331, 1954
TaqII GACCGA 1 cut(s) 1124
TatI WGTACW 2 cut(s) 912, 1578
TauI GCSGC 2 cut(s) 964, 1804
TfiI GAWTC 5 cut(s) 340, 1786, 2042, 2063, 2351
TscAI CASTG 5 cut(s) 286, 505, 1124, 1192, 1588
TseFI GTSAC 1 cut(s) 2227
TseI GCWGC 5 cut(s) 254, 933, 1060, 1246, 1394
Tsp45I GTSAC 1 cut(s) 2227
TspDTI ATGAA 5 cut(s) 265, 637, 1042, 1086, 2285
TspGWI ACGGA 1 cut(s) 2049
TspRI CASTG 5 cut(s) 286, 505, 1124, 1192, 1588
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 5 cut(s) 731, 1496, 1997, 2054, 2294
VspI ATTAAT 1 cut(s) 2136
XagI CCTNNNNNAGG 2 cut(s) 59, 2202
XapI RAATTY 5 cut(s) 638, 1168, 1312, 2274, 2427
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 2 cut(s) 1033, 1801
XcmI CCANNNNNNNNNTGG 1 cut(s) 1513
XspI CTAG 6 cut(s) 23, 485, 1521, 1593, 2214, 2304
ZraI GACGTC 1 cut(s) 400
Zsp2I ATGCAT 1 cut(s) 1758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.