Rmu_ssc0000476.1_g000003

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000476.1
OG0000153
Physical Location & Seq
Reverse (-)
18061 .. 22425
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000476.1_g000003.1.cds

Sequence Viewer

Length: 2865 bp
atggctcctgaggtgtgtagtttagttgatcaccatttcgtgcttgaggatggccttaagaaggagtttagaggcaattatgaaacttccagagatgtcagtcttgaacagatttccaggctactgattgagaggggagattatccggcagttcccatcaactttgagtatccctgtggtttagttacgggatggccacaatgggttgactatgaactaggagatgaggctacgagaatcaaactttcagaggctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacaaggatgtggagtctctccgtcatgtagttcgaaggtggaatcctcacatgcatacctttgtttgcgactggggagagtttacccctaccttggaggatgtcttgaatattatgaggcttcccattactggttccgtcaaccttcttggctttgattttgactcagagaagttgcaggttcttgtagaaggggcttccagtattaaaggaagtaagcgccgtttcgcgaattgggtaaaggctttgattctgggctttgattctggttgccgtctggaagcgatgctatccctgtggctgacgaagtttgtcttcattgagttctcttatgagtatgttgaagagcgcttatttcccttggcaattgcaatagcagccggcagtaggtttcctttgggaccaatgttcattggtcacgtttatcgtatgcttgaccatattgttgttgacgagttggagagcgttggtcggtgtggagtcactacgttggtttctaccacttttctgcaagtattcatctgggaacggtttaaaggattaaagatggagcctctaaccatgagcctctctttggaattgtataataatgacaaggaaggcagcaagcaagcacagactgagtattttccgcagccctatctccagtcttctgagtttgagactttttcgttttctggtagagaagagcagtgtactacagctctaggtcgggttgaattatacatgactgtttgcccaaacttcatcccgtccatcagtgaggataaggaagacttggacatcttccctgttgtttattctcctgacagagtgatgcgacaacttggttgccttcaggacgttccctcacctccacctcgctctcttaactctaagatcacaagcttttctcatatggagcgtagatgtaggggagtgttgtgtaggttcaggctttttgtggaagccggtggtcctcagctacagttgggtcctattaccagcagcagattagctagccccaaggctgtactgacttatgccgaaaagcataacctcacgtatactgaagtgtacagtgatggcaccagaaaggttgtcagctatttgaagggttttgaagctaagagggtgaagggagagggaaacaagtgcgataagaaaataggtgataaaggtgatgcgagggagcacgacactcagaagcctgttcggcgtttcaagcccaaggtggattttgacaagtttatgcatacgacccaacacggggtcaaactgatgatccctccaagcattccgcttcaaaagaacaaggaagtcaagaagaaaagatcttcaacaccccgagcaggtggtacttcccaaacaaagcaagcaaatgctaccaatttcgaagtgaagaaaagggtgaagagggaggctggtgcagattttgatgtccctctccgtcgaagcaaccgtgtgaaatcgaagagttctcctttacctcgtggtcctccagcctatcttgagttatctgattctgatcatggagagggttctcaagggggtccagctgatccctctaaagaagatcatactactccttcaaaaggggcttctgatcatctgtctgaagtgtttcccatggttagccaagatagtgacaaccaggttatggaagatgaaggcatgagtgatggtgacaaggtcgtcacagatgatggcacgagcgatggtgacaaggtggccgaagatgaaggcatgagtgataagcaagccttgaaaaacgacagtgtgagcaatgataatcaggagcagggtcatcctttagaagttggtaagagtactgatgaggttggtcttgacacggcggtaaacgccttagttgagtctgataagcacattccagggattgataaggtgactgccattcacactcaaagccttggcccaagcttgcctaccaaagggtcaactagtgagtgggcgacccatatggacaacttcatggctcgatttgcttctaaagaggagtctgctttaagcatggctgatgttacaccagtgttgagcggagacatcgctgttttcgctggtatgaaaattccttcagagttggtgggtcccttgactagatttgctgagaggtatagcggtggagatatctttagtttgattgatcgagattatacttcaaggaagaagtgtgagttgattaaggaacttggcatgatgttgtttagcatggaagtttgccagataaaagatggagaagtatttctcatttggagagacacctgtcgtgatttcatgggggcaggtcttaacattggcttcctattggattccttaaaacaaggtgcaaaacatttctttggttatatgatgaggtctgaaggatcagagaaccagtatgttaaagttcaaggtctgcaggagatggtttcacgaaccaagaaggagctggcacgtcttgaggaagagttgcgcaaggctcaagatgatctgagttccagtctgcgtgatgtttctgtgcctgccatggagtgcgtattagagtcttcttggaaggatggcagtcgcttctctcattatttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

954

Amino Acids

106.88

Weight (kDa)

5.62

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1619
AasI GACNNNNNNGTC 1 cut(s) 1970
Acc16I TGCGCA 1 cut(s) 2750
Acc36I ACCTGC 3 cut(s) 466, 1619, 2570
AccB1I GGYRCC 1 cut(s) 1364
AccB7I CCANNNNNTGG 1 cut(s) 1936
AccBSI CCGCTC 1 cut(s) 2334
AccI GTMKAC 1 cut(s) 1343
AccII CGCG 1 cut(s) 527
AciI CCGC 5 cut(s) 929, 1577, 2132, 2334, 2415
AclWI GGATC 3 cut(s) 1555, 1832, 2668
AcoI YGGCCR 2 cut(s) 194, 2007
AcsI RAATTY 1 cut(s) 2364
AcuI CTGAAG 5 cut(s) 1118, 1368, 1914, 2355, 2676
AfaI GTAC 5 cut(s) 994, 1311, 1355, 1636, 2107
AfeI AGCGCT 1 cut(s) 647
AflII CTTAAG 1 cut(s) 56
AhlI ACTAGT 1 cut(s) 2237
AjiI CACGTC 1 cut(s) 2732
AjnI CCWGG 3 cut(s) 116, 1929, 2167
AluBI AGCT 9 cut(s) 1001, 1185, 1261, 1295, 1383, 1403, 1835, 2217, 2725
AluI AGCT 9 cut(s) 1001, 1185, 1261, 1295, 1383, 1403, 1835, 2217, 2725
Alw21I GWGCWC 1 cut(s) 1473
Alw26I GTCTC 4 cut(s) 318, 953, 2331, 2547
AlwI GGATC 3 cut(s) 1555, 1832, 2668
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 1623
Aor51HI AGCGCT 1 cut(s) 647
AoxI GGCC 4 cut(s) 52, 194, 2007, 2209
ApeKI GCWGC 5 cut(s) 254, 674, 900, 931, 1284
ApoI RAATTY 1 cut(s) 2364
Asp700I GAANNNNTTC 2 cut(s) 1899, 2538
AspLEI GCGC 3 cut(s) 519, 648, 2751
AspS9I GGNCC 7 cut(s) 698, 1253, 1271, 1772, 1829, 2210, 2384
AsuHPI GGTGA 9 cut(s) 23, 1140, 1423, 1460, 1469, 1699, 1973, 2009, 2194
AsuII TTCGAA 2 cut(s) 331, 1671
AsuNHI GCTAGC 1 cut(s) 1295
AvaI CYCGRG 1 cut(s) 1623
AvaII GGWCC 6 cut(s) 698, 1253, 1271, 1772, 1829, 2384
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 1364
BauI CACGAG 2 cut(s) 1767, 1987
BbsI GAAGAC 4 cut(s) 604, 939, 1077, 2814
Bbv12I GWGCWC 1 cut(s) 1473
BbvCI CCTCAGC 1 cut(s) 1257
BbvI GCAGC 5 cut(s) 241, 686, 912, 943, 1296
BceAI ACGGC 3 cut(s) 504, 555, 2145
BciT130I CCWGG 3 cut(s) 118, 1931, 2169
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 3 cut(s) 28, 1804, 1882
BcoDI GTCTC 4 cut(s) 318, 953, 2331, 2547
BcuI ACTAGT 1 cut(s) 2237
BfaI CTAG 5 cut(s) 218, 1004, 1296, 2238, 2394
BfmI CTRYAG 3 cut(s) 996, 1262, 2693
BfoI RGCGCY 2 cut(s) 520, 649
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 3 cut(s) 466, 1619, 2570
BfuI GTATCC 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 1492
BglII AGATCT 1 cut(s) 1610
BisI GCNGC 5 cut(s) 255, 675, 901, 932, 1285
BlsI GCNGC 5 cut(s) 256, 676, 902, 933, 1286
BmcAI AGTACT 1 cut(s) 2107
Bme1390I CCNGG 3 cut(s) 118, 1931, 2169
Bme18I GGWCC 6 cut(s) 698, 1253, 1271, 1772, 1829, 2384
BmeT110I CYCGRG 1 cut(s) 1623
BmgBI CACGTC 1 cut(s) 2732
BmgT120I GGNCC 7 cut(s) 698, 1253, 1271, 1772, 1829, 2210, 2384
BmiI GGNNCC 9 cut(s) 6, 433, 699, 849, 1272, 1366, 1830, 2385, 2386
BmrFI CCNGG 3 cut(s) 118, 1931, 2169
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 3 cut(s) 573, 1104, 1450
BmtI GCTAGC 1 cut(s) 1299
BmuI ACTGGG 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 2559
BpiI GAAGAC 4 cut(s) 604, 939, 1077, 2814
BpmI CTGGAG 2 cut(s) 926, 1761
Bpu10I CCTNAGC 1 cut(s) 1257
Bpu14I TTCGAA 2 cut(s) 331, 1671
BpuEI CTTGAG 5 cut(s) 65, 1806, 1808, 2742, 2756
BsaAI YACGTR 1 cut(s) 1341
BsaBI GATNNNNATC 1 cut(s) 1803
BsaJI CCNNGG 8 cut(s) 390, 657, 1302, 1506, 1905, 2168, 2206, 2802
Bse118I RCCGGY 2 cut(s) 677, 1247
Bse1I ACTGG 7 cut(s) 374, 433, 498, 943, 2324, 2671, 2775
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 2068
Bse8I GATNNNNATC 1 cut(s) 1803
BseBI CCWGG 3 cut(s) 118, 1931, 2169
BseDI CCNNGG 8 cut(s) 390, 657, 1302, 1506, 1905, 2168, 2206, 2802
BseGI GGATG 7 cut(s) 55, 197, 310, 403, 1044, 2083, 2839
BseJI GATNNNNATC 1 cut(s) 1803
BseMI GCAATG 1 cut(s) 2068
BseMII CTCAG 7 cut(s) 477, 909, 942, 1271, 1493, 2394, 2759
BseNI ACTGG 7 cut(s) 374, 433, 498, 943, 2324, 2671, 2775
BseRI GAGGAG 1 cut(s) 2306
BseXI GCAGC 5 cut(s) 241, 686, 912, 943, 1296
BsgI GTGCAG 1 cut(s) 1725
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 4 cut(s) 54, 196, 2009, 2211
BshNI GGYRCC 1 cut(s) 1364
BsiHKAI GWGCWC 1 cut(s) 1473
BsiHKCI CYCGRG 1 cut(s) 1623
BsiSI CCGG 3 cut(s) 146, 678, 1248
BslFI GGGAC 3 cut(s) 711, 1703, 2370
BsmAI GTCTC 4 cut(s) 318, 953, 2331, 2547
BsmFI GGGAC 3 cut(s) 711, 1703, 2370
BsmI GAATGC 1 cut(s) 1572
BsnI GGCC 4 cut(s) 54, 196, 2009, 2211
BsoBI CYCGRG 1 cut(s) 1623
Bsp119I TTCGAA 2 cut(s) 331, 1671
Bsp1286I GDGCHC 1 cut(s) 1473
Bsp1407I TGTACA 1 cut(s) 1353
Bsp19I CCATGG 2 cut(s) 1905, 2802
Bsp68I TCGCGA 1 cut(s) 527
BspACI CCGC 5 cut(s) 929, 1577, 2132, 2334, 2415
BspANI GGCC 4 cut(s) 54, 196, 2009, 2211
BspCNI CTCAG 7 cut(s) 476, 910, 943, 1270, 1492, 2395, 2760
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 9 cut(s) 6, 433, 699, 849, 1272, 1366, 1830, 2385, 2386
BspMAI CTGCAG 1 cut(s) 2697
BspMI ACCTGC 3 cut(s) 466, 1619, 2570
BspOI GCTAGC 1 cut(s) 1299
BspPI GGATC 3 cut(s) 1555, 1832, 2668
BspQI GCTCTTC 2 cut(s) 636, 978
BspT104I TTCGAA 2 cut(s) 331, 1671
BspT107I GGYRCC 1 cut(s) 1364
BspTI CTTAAG 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 2334
BsrDI GCAATG 1 cut(s) 2068
BsrFI RCCGGY 2 cut(s) 677, 1247
BsrGI TGTACA 1 cut(s) 1353
BsrI ACTGG 7 cut(s) 374, 433, 498, 943, 2324, 2671, 2775
BssAI RCCGGY 2 cut(s) 677, 1247
BssECI CCNNGG 8 cut(s) 390, 657, 1302, 1506, 1905, 2168, 2206, 2802
BssNAI GTATAC 1 cut(s) 1344
BssSI CACGAG 2 cut(s) 1767, 1987
BssT1I CCWWGG 7 cut(s) 390, 657, 1302, 1506, 1905, 2206, 2802
Bst1107I GTATAC 1 cut(s) 1344
Bst2BI CACGAG 2 cut(s) 1767, 1987
Bst2UI CCWGG 3 cut(s) 118, 1931, 2169
Bst4CI ACNGT 6 cut(s) 828, 1030, 1266, 1358, 1739, 2054
Bst6I CTCTTC 5 cut(s) 636, 978, 1685, 1745, 2736
BstAFI CTTAAG 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 1353
BstBAI YACGTR 1 cut(s) 1341
BstBI TTCGAA 2 cut(s) 331, 1671
BstC8I GCNNGC 9 cut(s) 679, 905, 909, 1297, 1653, 2037, 2219, 2727, 2799
BstDSI CCRYGG 2 cut(s) 1905, 2802
BstENI CCTNNNNNAGG 3 cut(s) 59, 1869, 2226
BstF5I GGATG 7 cut(s) 55, 197, 310, 403, 1044, 2083, 2839
BstFNI CGCG 1 cut(s) 527
BstH2I RGCGCY 2 cut(s) 520, 649
BstHHI GCGC 3 cut(s) 519, 648, 2751
BstMAI GTCTC 4 cut(s) 318, 953, 2331, 2547
BstMWI GCNNNNNNNGC 6 cut(s) 674, 1492, 1501, 2138, 2279, 2351
BstNI CCWGG 3 cut(s) 118, 1931, 2169
BstNSI RCATGY 1 cut(s) 352
BstPAI GACNNNNGTC 1 cut(s) 2559
BstSCI CCNGG 3 cut(s) 116, 1929, 2167
BstSFI CTRYAG 3 cut(s) 996, 1262, 2693
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 5 cut(s) 241, 686, 912, 943, 1296
BstV2I GAAGAC 4 cut(s) 604, 939, 1077, 2814
BstX2I RGATCY 1 cut(s) 1610
BstYI RGATCY 1 cut(s) 1610
BstZ17I GTATAC 1 cut(s) 1344
Bsu36I CCTNAGG 1 cut(s) 9
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 4 cut(s) 54, 196, 2009, 2211
BtgI CCRYGG 2 cut(s) 1905, 2802
BtgZI GCGATG 3 cut(s) 596, 2007, 2326
BtrI CACGTC 1 cut(s) 2732
BtsCI GGATG 7 cut(s) 55, 197, 310, 403, 1044, 2083, 2839
BtsI GCAGTG 1 cut(s) 995
BtsIMutI CAGTG 5 cut(s) 995, 1063, 1363, 2059, 2331
BtuMI TCGCGA 1 cut(s) 527
BveI ACCTGC 3 cut(s) 466, 1619, 2570
Cac8I GCNNGC 9 cut(s) 679, 905, 909, 1297, 1653, 2037, 2219, 2727, 2799
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 3 cut(s) 519, 648, 2751
Cfr10I RCCGGY 2 cut(s) 677, 1247
Cfr13I GGNCC 7 cut(s) 698, 1253, 1271, 1772, 1829, 2210, 2384
CsiI ACCWGGT 1 cut(s) 1929
Csp6I GTAC 5 cut(s) 993, 1310, 1354, 1635, 2106
CviQI GTAC 5 cut(s) 993, 1310, 1354, 1635, 2106
DraI TTTAAA 1 cut(s) 832
DrdI GACNNNNNNGTC 1 cut(s) 1970
DseDI GACNNNNNNGTC 1 cut(s) 1970
EaeI YGGCCR 2 cut(s) 194, 2007
Eam1104I CTCTTC 5 cut(s) 636, 978, 1685, 1745, 2736
EarI CTCTTC 5 cut(s) 636, 978, 1685, 1745, 2736
Eco130I CCWWGG 7 cut(s) 390, 657, 1302, 1506, 1905, 2206, 2802
Eco32I GATATC 2 cut(s) 295, 2425
Eco47I GGWCC 6 cut(s) 698, 1253, 1271, 1772, 1829, 2384
Eco47III AGCGCT 1 cut(s) 647
Eco57I CTGAAG 5 cut(s) 1118, 1368, 1914, 2355, 2676
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 1623
EcoNI CCTNNNNNAGG 3 cut(s) 59, 1869, 2226
EcoO109I RGGNCCY 2 cut(s) 1271, 2384
EcoRII CCWGG 3 cut(s) 116, 1929, 2167
EcoRV GATATC 2 cut(s) 295, 2425
EcoT14I CCWWGG 7 cut(s) 390, 657, 1302, 1506, 1905, 2206, 2802
EcoT22I ATGCAT 2 cut(s) 354, 1533
ErhI CCWWGG 7 cut(s) 390, 657, 1302, 1506, 1905, 2206, 2802
FalI AAGNNNNNCTT 6 cut(s) 596, 628, 1058, 1090, 2024, 2056
FaqI GGGAC 3 cut(s) 711, 1703, 2370
FauNDI CATATG 2 cut(s) 1194, 2256
FbaI TGATCA 3 cut(s) 28, 1804, 1882
FblI GTMKAC 1 cut(s) 1343
Fnu4HI GCNGC 5 cut(s) 255, 675, 901, 932, 1285
FokI GGATG 7 cut(s) 62, 204, 317, 410, 1031, 2070, 2846
Fsp4HI GCNGC 5 cut(s) 255, 675, 901, 932, 1285
FspBI CTAG 5 cut(s) 218, 1004, 1296, 2238, 2394
FspI TGCGCA 1 cut(s) 2750
GlaI GCGC 3 cut(s) 518, 647, 2750
GluI GCNGC 5 cut(s) 255, 675, 901, 932, 1285
GsuI CTGGAG 2 cut(s) 926, 1761
HaeII RGCGCY 2 cut(s) 520, 649
HaeIII GGCC 4 cut(s) 54, 196, 2009, 2211
HapII CCGG 3 cut(s) 146, 678, 1248
HhaI GCGC 3 cut(s) 519, 648, 2751
Hin6I GCGC 3 cut(s) 517, 646, 2749
HinP1I GCGC 3 cut(s) 517, 646, 2749
HincII GTYRAC 4 cut(s) 208, 439, 748, 2235
HindII GTYRAC 4 cut(s) 208, 439, 748, 2235
HindIII AAGCTT 2 cut(s) 1183, 2215
HpaII CCGG 3 cut(s) 146, 678, 1248
HphI GGTGA 9 cut(s) 23, 1140, 1423, 1460, 1469, 1699, 1973, 2009, 2194
Hpy166II GTNNAC 9 cut(s) 208, 381, 439, 748, 993, 1344, 1354, 2137, 2235
Hpy8I GTNNAC 9 cut(s) 208, 381, 439, 748, 993, 1344, 1354, 2137, 2235
Hpy99I CGWCG 1 cut(s) 1731
HpyCH4III ACNGT 6 cut(s) 828, 1030, 1266, 1358, 1739, 2054
HpyCH4IV ACGT 5 cut(s) 717, 785, 1140, 1340, 2731
HpyCH4V TGCA 8 cut(s) 352, 475, 668, 808, 1531, 1706, 2624, 2695
HpyF10VI GCNNNNNNNGC 6 cut(s) 674, 1492, 1501, 2138, 2279, 2351
HpySE526I ACGT 5 cut(s) 717, 785, 1140, 1340, 2731
HspAI GCGC 3 cut(s) 517, 646, 2749
KflI GGGWCCC 1 cut(s) 2384
KroI GCCGGC 1 cut(s) 677
KroNI GCCGGC 1 cut(s) 679
Ksp22I TGATCA 3 cut(s) 28, 1804, 1882
LguI GCTCTTC 2 cut(s) 636, 978
LmnI GCTCC 6 cut(s) 10, 847, 1198, 1468, 2074, 2722
Lsp1109I GCAGC 5 cut(s) 241, 686, 912, 943, 1296
LweI GCATC 3 cut(s) 573, 1104, 1450
MabI ACCWGGT 1 cut(s) 1929
MaeI CTAG 5 cut(s) 218, 1004, 1296, 2238, 2394
MaeII ACGT 5 cut(s) 717, 785, 1140, 1340, 2731
MaeIII GTNAC 9 cut(s) 184, 713, 778, 1922, 1961, 1972, 1997, 2182, 2317
MbiI CCGCTC 1 cut(s) 2334
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 1610
MhlI GDGCHC 1 cut(s) 1473
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 7 cut(s) 76, 529, 663, 875, 1016, 1666, 2364
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 6 cut(s) 320, 455, 786, 2159, 2303, 2828
MmeI TCCRAC 1 cut(s) 735
Mox20I TGGCCA 1 cut(s) 196
Mph1103I ATGCAT 2 cut(s) 354, 1533
MroNI GCCGGC 1 cut(s) 677
MroXI GAANNNNTTC 2 cut(s) 1899, 2538
MscI TGGCCA 1 cut(s) 196
Msp20I TGGCCA 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 1835
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 3 cut(s) 146, 678, 1248
MspR9I CCNGG 3 cut(s) 118, 1931, 2169
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 1572
MvaI CCWGG 3 cut(s) 118, 1931, 2169
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 6 cut(s) 674, 1492, 1501, 2138, 2279, 2351
NaeI GCCGGC 1 cut(s) 679
NcoI CCATGG 2 cut(s) 1905, 2802
NdeI CATATG 2 cut(s) 1194, 2256
NgoMIV GCCGGC 1 cut(s) 677
NheI GCTAGC 1 cut(s) 1295
NlaIV GGNNCC 9 cut(s) 6, 433, 699, 849, 1272, 1366, 1830, 2385, 2386
NmuCI GTSAC 7 cut(s) 713, 778, 1922, 1961, 1972, 1997, 2182
NruI TCGCGA 1 cut(s) 527
NsbI TGCGCA 1 cut(s) 2750
NsiI ATGCAT 2 cut(s) 354, 1533
NspI RCATGY 1 cut(s) 352
NspV TTCGAA 2 cut(s) 331, 1671
PaqCI CACCTGC 1 cut(s) 1619
PciSI GCTCTTC 2 cut(s) 636, 978
PcsI WCGNNNNNNNCGW 1 cut(s) 1735
PctI GAATGC 1 cut(s) 1572
PdiI GCCGGC 1 cut(s) 679
PdmI GAANNNNTTC 2 cut(s) 1899, 2538
PfeI GAWTC 6 cut(s) 237, 340, 547, 560, 1799, 2606
PflFI GACNNNGTC 1 cut(s) 1967
PflMI CCANNNNNTGG 1 cut(s) 1936
PkrI GCNGC 5 cut(s) 256, 676, 902, 933, 1286
PleI GAGTC 6 cut(s) 319, 455, 785, 2158, 2302, 2827
PpsI GAGTC 6 cut(s) 319, 455, 785, 2158, 2302, 2827
Ppu21I YACGTR 1 cut(s) 1341
PpuMI RGGWCCY 2 cut(s) 1271, 2384
PshAI GACNNNNGTC 1 cut(s) 2559
Psp5II RGGWCCY 2 cut(s) 1271, 2384
Psp6I CCWGG 3 cut(s) 116, 1929, 2167
PspGI CCWGG 3 cut(s) 116, 1929, 2167
PspN4I GGNNCC 9 cut(s) 6, 433, 699, 849, 1272, 1366, 1830, 2385, 2386
PspPI GGNCC 7 cut(s) 698, 1253, 1271, 1772, 1829, 2210, 2384
PspPPI RGGWCCY 2 cut(s) 1271, 2384
PstI CTGCAG 1 cut(s) 2697
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1610
PsyI GACNNNGTC 1 cut(s) 1967
PvuII CAGCTG 1 cut(s) 1835
RruI TCGCGA 1 cut(s) 527
RsaI GTAC 5 cut(s) 994, 1311, 1355, 1636, 2107
RsaNI GTAC 5 cut(s) 993, 1310, 1354, 1635, 2106
SapI GCTCTTC 2 cut(s) 636, 978
SatI GCNGC 5 cut(s) 255, 675, 901, 932, 1285
Sau96I GGNCC 7 cut(s) 698, 1253, 1271, 1772, 1829, 2210, 2384
ScaI AGTACT 1 cut(s) 2107
SchI GAGTC 6 cut(s) 320, 455, 786, 2159, 2303, 2828
ScrFI CCNGG 3 cut(s) 118, 1931, 2169
SduI GDGCHC 1 cut(s) 1473
SexAI ACCWGGT 1 cut(s) 1929
SfaNI GCATC 3 cut(s) 573, 1104, 1450
SfcI CTRYAG 3 cut(s) 996, 1262, 2693
SfuI TTCGAA 2 cut(s) 331, 1671
SinI GGWCC 6 cut(s) 698, 1253, 1271, 1772, 1829, 2384
SmlI CTYRAG 6 cut(s) 44, 56, 1787, 1821, 2735, 2757
SmoI CTYRAG 6 cut(s) 44, 56, 1787, 1821, 2735, 2757
SpeI ACTAGT 1 cut(s) 2237
Sse9I AATT 7 cut(s) 76, 529, 663, 875, 1016, 1666, 2364
SsiI CCGC 5 cut(s) 929, 1577, 2132, 2334, 2415
SspI AATATT 1 cut(s) 409
SspMI CTAG 5 cut(s) 218, 1004, 1296, 2238, 2394
StyD4I CCNGG 3 cut(s) 116, 1929, 2167
StyI CCWWGG 7 cut(s) 390, 657, 1302, 1506, 1905, 2206, 2802
TaaI ACNGT 6 cut(s) 828, 1030, 1266, 1358, 1739, 2054
TaiI ACGT 5 cut(s) 720, 788, 1143, 1343, 2734
TaqI TCGA 6 cut(s) 331, 1671, 1729, 1748, 2275, 2443
TasI AATT 7 cut(s) 76, 529, 663, 875, 1016, 1666, 2364
TatI WGTACW 4 cut(s) 992, 1309, 1353, 2105
TfiI GAWTC 6 cut(s) 237, 340, 547, 560, 1799, 2606
TscAI CASTG 5 cut(s) 995, 1063, 1363, 2059, 2331
TseFI GTSAC 7 cut(s) 713, 778, 1922, 1961, 1972, 1997, 2182
TseI GCWGC 5 cut(s) 254, 674, 900, 931, 1284
Tsp45I GTSAC 7 cut(s) 713, 778, 1922, 1961, 1972, 1997, 2182
TspGWI ACGGA 4 cut(s) 259, 308, 424, 1715
TspRI CASTG 5 cut(s) 995, 1063, 1363, 2059, 2331
Tth111I GACNNNGTC 1 cut(s) 1967
Van91I CCANNNNNTGG 1 cut(s) 1936
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 6 cut(s) 698, 1253, 1271, 1772, 1829, 2384
XagI CCTNNNNNAGG 3 cut(s) 59, 1869, 2226
XapI RAATTY 1 cut(s) 2364
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 2525, 2722
XmiI GTMKAC 1 cut(s) 1343
XmnI GAANNNNTTC 2 cut(s) 1899, 2538
XspI CTAG 5 cut(s) 218, 1004, 1296, 2238, 2394
ZrmI AGTACT 1 cut(s) 2107
Zsp2I ATGCAT 2 cut(s) 354, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.