Rroxscaffold_1G00017510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000153
Physical Location & Seq
Reverse (-)
21592662 .. 21593841
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017510.1

Sequence Viewer

Length: 636 bp
ATGTCTATTGTCTCGCTTGACTACATCATTATTGATGAGTTAGAGAGTCTTGGTCGGTGTGGAGTTACCGCTTTGGTTTCTACCACTTTTATGCAAGTATTCATCCGGGAACGGTTCAAAGGGTTAAAGGTGGAACCCCCGACCTTGGGTCTGTCCTTGGAATTGTACAACAACGAGAATGAAGGTAGCAAGCGAGCACGGACCGAATATTTGTCGCCGGTTGGCTTGTCCCAAGATTGTAATGACTTATTCGAAAAGCATAACCACACCTATACCGAAGTGTACAACGGTGGTACTAGAAAGATTGTTGGTTATTTAAAAGGTTTTGAAGCTAAGAGTGTGAAGAAAGAAGGAAGAAAACATGACAAGAAGGCAAGTGACAAGGGTAATGTGAAGGAACAAAACACCCAAAAACCTATTCGGCTCTTCAAGCCCAAAGTGGATTTTGATAAGTTCATGCATACGACCCGTCATGGAGTCAAGTTGATGATTCATCCAAGCATGTTGCTTCAAAAGAACAAGGAGGTGAAGAAGAAAACATCTTCAACTTCCCGAGCAAGTGGTATTCCTCATGCAAAGCAAGCGAATGCTACGAGTTTTGAAGTGAAAAAAAGGACAAAGAGGAAGGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.02

Weight (kDa)

9.88

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AfaI GTAC 3 cut(s) 167, 284, 295
AfiI CCNNNNNNNGG 2 cut(s) 145, 146
AgsI TTSAA 6 cut(s) 118, 329, 430, 512, 546, 602
AhdI GACNNNNNGTC 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 552
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 538
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 201
BmeRI GACNNNNNGTC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 144, 156
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 146
Bse118I RCCGGY 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 144, 156
BseGI GGATG 2 cut(s) 102, 493
BseLI CCNNNNNNNGG 2 cut(s) 145, 146
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 2 cut(s) 106, 218
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 145, 146
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1407I TGTACA 2 cut(s) 165, 282
BspACI CCGC 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 217
BsrGI TGTACA 2 cut(s) 165, 282
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 144, 156
BssT1I CCWWGG 2 cut(s) 144, 156
Bst4CI ACNGT 2 cut(s) 114, 290
Bst6I CTCTTC 1 cut(s) 431
BstAUI TGTACA 2 cut(s) 165, 282
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 191, 195, 582
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 102, 493
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 430, 581
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 102, 493
Cac8I GCNNGC 3 cut(s) 191, 195, 582
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 201
CpoI CGGWCCG 1 cut(s) 201
Csp6I GTAC 3 cut(s) 166, 283, 294
CspI CGGWCCG 1 cut(s) 201
CviAII CATG 5 cut(s) 362, 457, 473, 502, 572
CviJI RGCY 4 cut(s) 225, 332, 424, 433
CviKI_1 RGCY 4 cut(s) 225, 332, 424, 433
CviQI GTAC 3 cut(s) 166, 283, 294
DdeI CTNAG 1 cut(s) 333
DraI TTTAAA 1 cut(s) 318
DriI GACNNNNNGTC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 431
Eam1105I GACNNNNNGTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 431
Eco130I CCWWGG 2 cut(s) 144, 156
Eco47I GGWCC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 144, 156
EcoT22I ATGCAT 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 144, 156
FaeI CATG 5 cut(s) 365, 460, 476, 505, 575
FaiI YATR 9 cut(s) 92, 261, 273, 363, 458, 462, 474, 503, 573
FaqI GGGAC 1 cut(s) 214
FatI CATG 5 cut(s) 361, 456, 472, 501, 571
FokI GGATG 2 cut(s) 89, 480
FspBI CTAG 1 cut(s) 297
HapII CCGG 2 cut(s) 106, 218
Hin1II CATG 5 cut(s) 365, 460, 476, 505, 575
HinfI GANTC 3 cut(s) 46, 477, 490
HpaII CCGG 2 cut(s) 106, 218
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 552
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 5 cut(s) 176, 344, 364, 388, 619
HpyCH4III ACNGT 2 cut(s) 114, 290
HpyCH4V TGCA 3 cut(s) 94, 460, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 581
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 5 cut(s) 365, 460, 476, 505, 575
LguI GCTCTTC 1 cut(s) 431
LpnPI CCDG 2 cut(s) 119, 231
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 64, 377
MboII GAAGA 6 cut(s) 355, 366, 418, 534, 541, 544
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 161
MlyI GAGTC 2 cut(s) 55, 486
MnlI CCTC 3 cut(s) 517, 579, 615
Mph1103I ATGCAT 1 cut(s) 462
MseI TTAA 2 cut(s) 125, 317
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 2 cut(s) 106, 218
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 592
MwoI GCNNNNNNNGC 2 cut(s) 430, 581
NciI CCSGG 1 cut(s) 107
NlaIII CATG 5 cut(s) 365, 460, 476, 505, 575
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 431
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 105
PleI GAGTC 2 cut(s) 54, 485
PpsI GAGTC 2 cut(s) 54, 485
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 3 cut(s) 167, 284, 295
RsaNI GTAC 3 cut(s) 166, 283, 294
RseI CAYNNNNRTG 1 cut(s) 89
Rsr2I CGGWCCG 1 cut(s) 201
RsrII CGGWCCG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 125, 317
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 2 cut(s) 55, 486
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 199
SetI ASST 9 cut(s) 132, 146, 187, 272, 325, 334, 418, 528, 630
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 1 cut(s) 161
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 144, 156
TaaI ACNGT 2 cut(s) 114, 290
TaqI TCGA 1 cut(s) 252
TaqII GACCGA 1 cut(s) 218
TasI AATT 1 cut(s) 161
TatI WGTACW 2 cut(s) 165, 282
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 125, 317
Tru9I TTAA 2 cut(s) 125, 317
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 91, 195, 445, 482
TspGWI ACGGA 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 201
XceI RCATGY 1 cut(s) 505
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.