Rroxscaffold_6G00398560

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000153
Physical Location & Seq
Reverse (-)
20437499 .. 20441754
4256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398560.1

Sequence Viewer

Length: 1383 bp
ATGCTATCTCTGTGGTTAACAAAATTTGTCTTCATTGAGTTCTCTTATGAGAATGTTGAAGAGCGCGTGTTTCCCTTAGCAATTACAATAGCAGCCGGCAATAGTATTCATGCGGGAACGGTTCAAAGGGCTAAAGGTGGAACCCCGACCATGAGTCTATCCTTGGAATTGTACAACAATGACAAGGAAGGTAGCAAGCAAGCACGGATCGAATATTTGCCGTCGATACTTCCTCTGCTGTGTCGTTGGTTCAAAAGGAAGCAAGATAAGACAGTGTTTGCCCCGAGTATGTTGGATGATTCTCCTGATAGAGTGATGCGGCAACTTGGTTACCTTCAAGATGTTCCCTCACCTCCACCTCGCTCTCTTAACTCGAAGCTTAGGAATTGTTCTCTTGTGGAGCTTAGATGTGTACTTGATTTCACCGGCGAATTGCAGACCTCCCATCTCGGTTGCCGGGGAATGTTGCGAATGCTAACGTTTCCCATGCTTATAGTTGCTACCGGGAGGGGGTATAGCGATGTTACTAGACAGATTGTCGGTTATTTAAAAGGTTTTGAAGCTAAGAGTGCGAAGAAAAAAGGAAGAAAGCATGACAAGGAGGCAAGTGACAAGGGTAATGTGAAGGAACAAAACACCCAAAAACCTATTCAACGCTTCAAGCCCAAAGTGGATTTTGATAAGTTCATGCATATGACCCGTCATGGAGTCAAGTTGATGATTCCCCCAAGCACGTTGCTTCAAAAGAACAAGGAGATGAAGAAGAAAACATCTTCAACTTCCCGAGCAAGTGTTACTTCTTATGCAAGGCAATTGAATGCTACGAGTTTTGAAGTGAAAAAAGGGACAAAGAGGAAGGTAGTTGAAGACGAAGTCATGAGGGTTGGTGATAACCAAATTAGGGAATCGCTTACTTCCCTTAAGGAGCAGAATCATCCTTTGGATGTCGGTGAGAGTAATGACGGGCTTGGTCATGACACGGCGTGTAAGTTGATTAAGGAACTTGGCATGATGTTGTACGACATGGATGTTTGTCGACTAAAAGATGGAGAAGTATTCCTTTTTTGGAGAGATGTTTGCCGTGATTTCATGGGGGTGGGTCTTAATGTTGGTTTCCTATTGGATTCCTTAAAACAAGGTGCACAACACTTCTTTGGTTATATGATGAGGCTCGAAGGATCGGAGAACCGGTGTGTTAAAATTCGTGGTCTGCAGGAGATGGTTTTACAAACCAAGAAGGAGCTTGCACGTCTTGAGGGAGAGTTGCGCAAGGCTCGGGATGATTTAAATTCCGGTTTGCGCAATGTTCCTATGCCTGCTATGGAGTGCATACTGGAGTCTTCTTGGAAGGATGACGGTTGCTTCTTTCATTATTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

460

Amino Acids

52.45

Weight (kDa)

9.33

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1268, 1301
AccI GTMKAC 1 cut(s) 1036
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 113, 319
AclI AACGTT 1 cut(s) 479
AclWI GGATC 2 cut(s) 215, 1186
AcsI RAATTY 3 cut(s) 23, 1200, 1288
AdeI CACNNNGTG 1 cut(s) 984
AfaI GTAC 4 cut(s) 173, 414, 1019, 1379
AfiI CCNNNNNNNGG 2 cut(s) 510, 901
AflII CTTAAG 1 cut(s) 920
AgeI ACCGGT 1 cut(s) 1188
AhdI GACNNNNNGTC 2 cut(s) 153, 536
AjiI CACGTC 1 cut(s) 1250
AjuI GAANNNNNNNTTGG 4 cut(s) 633, 665, 923, 955
AluBI AGCT 4 cut(s) 379, 403, 563, 1243
AluI AGCT 4 cut(s) 379, 403, 563, 1243
Alw21I GWGCWC 1 cut(s) 1144
Alw44I GTGCAC 1 cut(s) 1140
AlwI GGATC 2 cut(s) 215, 1186
Ama87I CYCGRG 3 cut(s) 283, 783, 1275
ApaLI GTGCAC 1 cut(s) 1140
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 3 cut(s) 23, 1200, 1288
AsiGI ACCGGT 1 cut(s) 1188
AspLEI GCGC 3 cut(s) 66, 1269, 1302
AsuC2I CCSGG 2 cut(s) 458, 505
AsuHPI GGTGA 4 cut(s) 342, 415, 899, 962
AvaI CYCGRG 3 cut(s) 283, 783, 1275
BaeGI GKGCMC 1 cut(s) 1144
BbsI GAAGAC 3 cut(s) 22, 873, 1332
Bbv12I GWGCWC 1 cut(s) 1144
BbvI GCAGC 1 cut(s) 104
BccI CCATC 3 cut(s) 453, 1040, 1213
BceAI ACGGC 3 cut(s) 205, 996, 1065
BcnI CCSGG 2 cut(s) 458, 505
BfaI CTAG 2 cut(s) 528, 1381
BfmI CTRYAG 1 cut(s) 1211
BfrI CTTAAG 1 cut(s) 920
BisI GCNGC 2 cut(s) 93, 320
BlsI GCNGC 2 cut(s) 94, 321
Bme1390I CCNGG 2 cut(s) 458, 505
BmeRI GACNNNNNGTC 2 cut(s) 153, 536
BmeT110I CYCGRG 3 cut(s) 283, 783, 1275
BmgBI CACGTC 1 cut(s) 1250
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 458, 505
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 3 cut(s) 22, 873, 1332
BpmI CTGGAG 1 cut(s) 1355
Bpu10I CCTNAGC 2 cut(s) 76, 380
BpuEI CTTGAG 1 cut(s) 1274
BpuMI CCSGG 2 cut(s) 458, 505
BsaJI CCNNGG 2 cut(s) 162, 457
BsaWI WCCGGW 2 cut(s) 1188, 1292
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 2 cut(s) 510, 901
Bse118I RCCGGY 3 cut(s) 95, 425, 1188
Bse1I ACTGG 1 cut(s) 1338
Bse3DI GCAATG 1 cut(s) 1309
BseDI CCNNGG 2 cut(s) 162, 457
BseGI GGATG 6 cut(s) 301, 934, 949, 1033, 1285, 1357
BseLI CCNNNNNNNGG 2 cut(s) 510, 901
BseMI GCAATG 1 cut(s) 1309
BseNI ACTGG 1 cut(s) 1338
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 66
BshTI ACCGGT 1 cut(s) 1188
BsiHKAI GWGCWC 1 cut(s) 1144
BsiHKCI CYCGRG 3 cut(s) 283, 783, 1275
BsiSI CCGG 6 cut(s) 96, 426, 457, 504, 1189, 1293
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 2 cut(s) 510, 901
BsmFI GGGAC 1 cut(s) 859
BsmI GAATGC 2 cut(s) 477, 823
BsoBI CYCGRG 3 cut(s) 283, 783, 1275
Bsp1286I GDGCHC 1 cut(s) 1144
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 207, 1178
BspACI CCGC 2 cut(s) 113, 319
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 876, 973
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 1215
BspPI GGATC 2 cut(s) 215, 1186
BspQI GCTCTTC 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 920
BsrDI GCAATG 1 cut(s) 1309
BsrFI RCCGGY 3 cut(s) 95, 425, 1188
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 1338
BssAI RCCGGY 3 cut(s) 95, 425, 1188
BssECI CCNNGG 2 cut(s) 162, 457
BssMI GATC 2 cut(s) 207, 1178
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 121, 274, 1358
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 920
BstAUI TGTACA 1 cut(s) 171
BstC8I GCNNGC 5 cut(s) 97, 197, 201, 1245, 1317
BstDEI CTNAG 4 cut(s) 76, 380, 404, 564
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 6 cut(s) 301, 934, 949, 1033, 1285, 1357
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 3 cut(s) 66, 1269, 1302
BstKTI GATC 2 cut(s) 210, 1181
BstMBI GATC 2 cut(s) 207, 1178
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 456, 503
BstSFI CTRYAG 1 cut(s) 1211
BstSLI GKGCMC 1 cut(s) 1144
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 3 cut(s) 22, 873, 1332
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 1250
BtsCI GGATG 6 cut(s) 301, 934, 949, 1033, 1285, 1357
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 5 cut(s) 97, 197, 201, 1245, 1317
CciI TCATGA 2 cut(s) 876, 973
CfoI GCGC 3 cut(s) 66, 1269, 1302
Cfr10I RCCGGY 3 cut(s) 95, 425, 1188
Csp6I GTAC 4 cut(s) 172, 413, 1018, 1378
CspAI ACCGGT 1 cut(s) 1188
CviQI GTAC 4 cut(s) 172, 413, 1018, 1378
DdeI CTNAG 4 cut(s) 76, 380, 404, 564
DpnI GATC 2 cut(s) 209, 1180
DpnII GATC 2 cut(s) 207, 1178
DraI TTTAAA 2 cut(s) 549, 1287
DraIII CACNNNGTG 1 cut(s) 984
DriI GACNNNNNGTC 2 cut(s) 153, 536
Eam1104I CTCTTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 2 cut(s) 153, 536
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 162
Eco88I CYCGRG 3 cut(s) 283, 783, 1275
Eco91I GGTNACC 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 162
FalI AAGNNNNNCTT 4 cut(s) 781, 813, 1044, 1076
FaqI GGGAC 1 cut(s) 859
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 693
FblI GTMKAC 1 cut(s) 1036
Fnu4HI GCNGC 2 cut(s) 93, 320
FokI GGATG 6 cut(s) 308, 921, 956, 1040, 1292, 1364
Fsp4HI GCNGC 2 cut(s) 93, 320
FspBI CTAG 2 cut(s) 528, 1381
FspI TGCGCA 2 cut(s) 1268, 1301
GlaI GCGC 3 cut(s) 65, 1268, 1301
GluI GCNGC 2 cut(s) 93, 320
GsuI CTGGAG 1 cut(s) 1355
HapII CCGG 6 cut(s) 96, 426, 457, 504, 1189, 1293
HhaI GCGC 3 cut(s) 66, 1269, 1302
Hin6I GCGC 3 cut(s) 64, 1267, 1300
HinP1I GCGC 3 cut(s) 64, 1267, 1300
HincII GTYRAC 2 cut(s) 18, 1037
HindII GTYRAC 2 cut(s) 18, 1037
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 8 cut(s) 154, 299, 708, 721, 905, 931, 1124, 1337
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 6 cut(s) 96, 426, 457, 504, 1189, 1293
HphI GGTGA 4 cut(s) 342, 415, 899, 962
Hpy166II GTNNAC 4 cut(s) 18, 413, 1037, 1142
Hpy188I TCNGA 1 cut(s) 1183
Hpy188III TCNNGA 7 cut(s) 305, 338, 783, 877, 974, 1253, 1277
Hpy8I GTNNAC 4 cut(s) 18, 413, 1037, 1142
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 7 cut(s) 182, 344, 619, 850, 1169, 1231, 1342
HpyCH4III ACNGT 3 cut(s) 121, 274, 1358
HpyCH4IV ACGT 3 cut(s) 479, 734, 1249
HpyCH4V TGCA 7 cut(s) 436, 691, 806, 1142, 1213, 1247, 1329
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 4 cut(s) 76, 380, 404, 564
HpySE526I ACGT 3 cut(s) 479, 734, 1249
HspAI GCGC 3 cut(s) 64, 1267, 1300
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 207, 1178
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 3 cut(s) 400, 925, 1240
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 306
MaeI CTAG 2 cut(s) 528, 1381
MaeII ACGT 3 cut(s) 479, 734, 1249
MaeIII GTNAC 4 cut(s) 329, 523, 608, 793
MalI GATC 2 cut(s) 209, 1180
MboI GATC 2 cut(s) 207, 1178
MboII GAAGA 9 cut(s) 22, 71, 586, 597, 765, 772, 775, 878, 1332
MfeI CAATTG 1 cut(s) 812
MhlI GDGCHC 1 cut(s) 1144
MluCI AATT 9 cut(s) 23, 81, 167, 385, 431, 812, 897, 1200, 1288
MlyI GAGTC 3 cut(s) 163, 717, 1346
MmeI TCCRAC 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 693
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 9 cut(s) 17, 369, 548, 921, 996, 1104, 1130, 1197, 1286
MslI CAYNNNNRTG 2 cut(s) 692, 1094
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 6 cut(s) 96, 426, 457, 504, 1189, 1293
MspR9I CCNGG 2 cut(s) 458, 505
MunI CAATTG 1 cut(s) 812
Mva1269I GAATGC 2 cut(s) 477, 823
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 569
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 458, 505
NdeI CATATG 1 cut(s) 693
NdeII GATC 2 cut(s) 207, 1178
NgoMIV GCCGGC 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 608
NsbI TGCGCA 2 cut(s) 1268, 1301
NsiI ATGCAT 1 cut(s) 693
PagI TCATGA 2 cut(s) 876, 973
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 2 cut(s) 477, 823
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 5 cut(s) 299, 721, 905, 931, 1124
PflFI GACNNNGTC 1 cut(s) 872
PinAI ACCGGT 1 cut(s) 1188
PkrI GCNGC 2 cut(s) 94, 321
PleI GAGTC 3 cut(s) 162, 716, 1345
PpsI GAGTC 3 cut(s) 162, 716, 1345
Psp1406I AACGTT 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 1215
PsyI GACNNNGTC 1 cut(s) 872
RsaI GTAC 4 cut(s) 173, 414, 1019, 1379
RsaNI GTAC 4 cut(s) 172, 413, 1018, 1378
RseI CAYNNNNRTG 2 cut(s) 692, 1094
SalI GTCGAC 1 cut(s) 1035
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 9 cut(s) 17, 369, 548, 921, 996, 1104, 1130, 1197, 1286
SatI GCNGC 2 cut(s) 93, 320
Sau3AI GATC 2 cut(s) 207, 1178
SchI GAGTC 3 cut(s) 163, 717, 1346
ScrFI CCNGG 2 cut(s) 458, 505
SduI GDGCHC 1 cut(s) 1144
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 1211
SgrAI CRCCGGYG 1 cut(s) 425
SmiI ATTTAAAT 1 cut(s) 1287
SmiMI CAYNNNNRTG 2 cut(s) 692, 1094
SmlI CTYRAG 2 cut(s) 920, 1253
SmoI CTYRAG 2 cut(s) 920, 1253
Sse9I AATT 9 cut(s) 23, 81, 167, 385, 431, 812, 897, 1200, 1288
SsiI CCGC 2 cut(s) 113, 319
SspI AATATT 1 cut(s) 215
SspMI CTAG 2 cut(s) 528, 1381
StyD4I CCNGG 2 cut(s) 456, 503
StyI CCWWGG 1 cut(s) 162
SwaI ATTTAAAT 1 cut(s) 1287
TaaI ACNGT 3 cut(s) 121, 274, 1358
TaiI ACGT 3 cut(s) 482, 737, 1252
TaqI TCGA 5 cut(s) 210, 224, 374, 1036, 1173
TasI AATT 9 cut(s) 23, 81, 167, 385, 431, 812, 897, 1200, 1288
TatI WGTACW 3 cut(s) 171, 412, 1377
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 5 cut(s) 299, 721, 905, 931, 1124
Tru1I TTAA 9 cut(s) 17, 369, 548, 921, 996, 1104, 1130, 1197, 1286
Tru9I TTAA 9 cut(s) 17, 369, 548, 921, 996, 1104, 1130, 1197, 1286
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 6 cut(s) 22, 98, 676, 773, 1078, 1358
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 872
Vha464I CTTAAG 1 cut(s) 920
VneI GTGCAC 1 cut(s) 1140
XapI RAATTY 3 cut(s) 23, 1200, 1288
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 2 cut(s) 528, 1381
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.