Rmu_sc0001563.1_g000044

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001563.1
OG0000153
Physical Location & Seq
Reverse (-)
144238 .. 145185
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001563.1_g000044.1.cds

Sequence Viewer

Length: 948 bp
atggctcctgaggtgtgtagtctagttgatcatcatttcgtgcttgaggatgaccttaagaaggagtttagaggcaattatgaaacttccagagatgtcagtgttgagcagatttccaggctactgattgagaggggggattatccagcagttcccataaactttgagtatccctgtggtttagttacagggtggccacaatgggttgaccacgagctaaaagatgaggccacgagagttagactttcagaggctgctgttctttcctctgtattcatctctgctcgttgtgacattaacagggatgtggagtctcttcgtcatgtagtccgaagatggaatcctcacacgcatacctttgtttgcgagtggggagagtttacccctactttggaggacgtcttgaacattatgaggcttcccattattggttcagtcaaccctcttggctttgattttgactcggagaagttgcaggttcttgtggaaggggcctccagtgtcaaaggaagtaagcgccgtttctcaaattgggtgaagcatttttggggcgttactgaaaatagggtatttgtcccaggtaaaggctttaattctagttgccgtctggaagcaatgctatccctgtggctgacgaaattcgtcttcattgagttctcttatgagtatgttgaagagcgcctgtttcccttggcaattgcaatagcagccagcagtaggtttcctttgggaccaatgtttcttggtcatgtctatcgtttgcttgaccatattgttgttgacgagttggagagcattggtcggtgtggagtcactacattggtttctaccacctttctgcaagtatttatctgggaacggttcaaaggattaaagatggagcccctgaccatgagtctctctttggaattgtataataacgacaaggaaggcagcaagcaagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

315

Amino Acids

36.16

Weight (kDa)

5.56

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 466
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 1 cut(s) 638
AcyI GRCGYC 1 cut(s) 399
AfiI CCNNNNNNNGG 5 cut(s) 61, 391, 428, 584, 717
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 406, 674, 865
AhdI GACNNNNNGTC 1 cut(s) 894
AjnI CCWGG 2 cut(s) 116, 577
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 318, 902
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 3 cut(s) 194, 228, 492
ApeKI GCWGC 3 cut(s) 254, 707, 933
ApoI RAATTY 1 cut(s) 638
AspLEI GCGC 2 cut(s) 519, 681
AspS9I GGNCC 2 cut(s) 492, 731
AsuHPI GGTGA 1 cut(s) 547
AvaII GGWCC 1 cut(s) 731
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 885
BauI CACGAG 2 cut(s) 212, 232
BbsI GAAGAC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 241, 719
BccI CCATC 2 cut(s) 330, 871
BceAI ACGGC 2 cut(s) 504, 588
BciT130I CCWGG 2 cut(s) 118, 579
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 318, 902
BfaI CTAG 2 cut(s) 23, 597
BfoI RGCGCY 2 cut(s) 520, 682
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 180
BisI GCNGC 3 cut(s) 255, 708, 934
BlsI GCNGC 3 cut(s) 256, 709, 935
Bme1390I CCNGG 2 cut(s) 118, 579
Bme18I GGWCC 1 cut(s) 731
BmeRI GACNNNNNGTC 1 cut(s) 894
BmgT120I GGNCC 2 cut(s) 492, 731
BmiI GGNNCC 4 cut(s) 6, 493, 732, 882
BmrFI CCNGG 2 cut(s) 118, 579
BpiI GAAGAC 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 577, 690
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 391, 428, 584, 717
Bse1I ACTGG 1 cut(s) 498
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 2 cut(s) 118, 579
BseDI CCNNGG 2 cut(s) 577, 690
BseGI GGATG 2 cut(s) 55, 310
BseLI CCNNNNNNNGG 5 cut(s) 61, 391, 428, 584, 717
BseMI GCAATG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 241, 719
BshFI GGCC 3 cut(s) 196, 230, 494
BslFI GGGAC 2 cut(s) 560, 744
BslI CCNNNNNNNGG 5 cut(s) 61, 391, 428, 584, 717
BsmAI GTCTC 2 cut(s) 318, 902
BsmFI GGGAC 2 cut(s) 560, 744
BsnI GGCC 3 cut(s) 196, 230, 494
Bsp1286I GDGCHC 1 cut(s) 885
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 3 cut(s) 196, 230, 494
BspLI GGNNCC 4 cut(s) 6, 493, 732, 882
BspMI ACCTGC 1 cut(s) 466
BspQI GCTCTTC 1 cut(s) 669
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 621
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 2 cut(s) 577, 690
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 399
BssSI CACGAG 2 cut(s) 212, 232
BssT1I CCWWGG 1 cut(s) 690
Bst2BI CACGAG 2 cut(s) 212, 232
Bst2UI CCWGG 2 cut(s) 118, 579
Bst4CI ACNGT 1 cut(s) 861
Bst6I CTCTTC 2 cut(s) 321, 669
BstACI GRCGYC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 712, 938, 942
BstDEI CTNAG 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 55, 310
BstH2I RGCGCY 2 cut(s) 520, 682
BstHHI GCGC 2 cut(s) 519, 681
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 318, 902
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 707
BstNI CCWGG 2 cut(s) 118, 579
BstSCI CCNGG 2 cut(s) 116, 577
BstV1I GCAGC 2 cut(s) 241, 719
BstV2I GAAGAC 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 9
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 196, 230, 494
BtsCI GGATG 2 cut(s) 55, 310
BtsIMutI CAGTG 2 cut(s) 106, 505
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 712, 938, 942
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 2 cut(s) 519, 681
Cfr13I GGNCC 2 cut(s) 492, 731
CviAII CATG 3 cut(s) 323, 749, 892
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 894
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 321, 669
Eam1105I GACNNNNNGTC 1 cut(s) 894
EarI CTCTTC 2 cut(s) 321, 669
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 731
Eco81I CCTNAGG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 116, 577
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 3 cut(s) 326, 752, 895
FaqI GGGAC 2 cut(s) 560, 744
FatI CATG 3 cut(s) 322, 748, 891
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 3 cut(s) 255, 708, 934
FokI GGATG 2 cut(s) 62, 317
FriOI GRGCYC 1 cut(s) 885
Fsp4HI GCNGC 3 cut(s) 255, 708, 934
FspBI CTAG 2 cut(s) 23, 597
GlaI GCGC 2 cut(s) 518, 680
GluI GCNGC 3 cut(s) 255, 708, 934
GsuI CTGGAG 1 cut(s) 481
HaeII RGCGCY 2 cut(s) 520, 682
HaeIII GGCC 3 cut(s) 196, 230, 494
HhaI GCGC 2 cut(s) 519, 681
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 3 cut(s) 326, 752, 895
Hin6I GCGC 2 cut(s) 517, 679
HinP1I GCGC 2 cut(s) 517, 679
HincII GTYRAC 3 cut(s) 208, 439, 781
HindII GTYRAC 3 cut(s) 208, 439, 781
HinfI GANTC 5 cut(s) 311, 340, 461, 810, 895
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 4 cut(s) 208, 381, 439, 781
Hpy188I TCNGA 3 cut(s) 250, 332, 466
Hpy188III TCNNGA 4 cut(s) 8, 90, 403, 608
Hpy8I GTNNAC 4 cut(s) 208, 381, 439, 781
HpyAV CCTTC 3 cut(s) 55, 482, 923
HpyCH4III ACNGT 1 cut(s) 861
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 475, 701, 841
HpyF10VI GCNNNNNNNGC 1 cut(s) 707
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 3 cut(s) 326, 752, 895
HspAI GCGC 2 cut(s) 517, 679
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 2 cut(s) 10, 880
Lsp1109I GCAGC 2 cut(s) 241, 719
MaeI CTAG 2 cut(s) 23, 597
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 4 cut(s) 184, 290, 553, 811
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 308, 345, 637, 686
MfeI CAATTG 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 885
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 6 cut(s) 76, 529, 592, 638, 696, 908
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 4 cut(s) 320, 455, 819, 904
MmeI TCCRAC 1 cut(s) 768
Mox20I TGGCCA 1 cut(s) 196
MscI TGGCCA 1 cut(s) 196
MseI TTAA 4 cut(s) 57, 297, 591, 872
Msp20I TGGCCA 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 118, 579
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 2 cut(s) 118, 579
MwoI GCNNNNNNNGC 1 cut(s) 707
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 326, 752, 895
NlaIV GGNNCC 4 cut(s) 6, 493, 732, 882
NmuCI GTSAC 2 cut(s) 290, 811
PciSI GCTCTTC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 3 cut(s) 256, 709, 935
PleI GAGTC 4 cut(s) 319, 455, 818, 903
PpsI GAGTC 4 cut(s) 319, 455, 818, 903
Psp6I CCWGG 2 cut(s) 116, 577
PspGI CCWGG 2 cut(s) 116, 577
PspN4I GGNNCC 4 cut(s) 6, 493, 732, 882
PspPI GGNCC 2 cut(s) 492, 731
PstNI CAGNNNCTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 4 cut(s) 57, 297, 591, 872
SatI GCNGC 3 cut(s) 255, 708, 934
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 492, 731
SchI GAGTC 4 cut(s) 320, 455, 819, 904
ScrFI CCNGG 2 cut(s) 118, 579
SduI GDGCHC 1 cut(s) 885
SetI ASST 9 cut(s) 15, 57, 219, 359, 402, 480, 583, 722, 836
SinI GGWCC 1 cut(s) 731
SmlI CTYRAG 2 cut(s) 44, 56
SmoI CTYRAG 2 cut(s) 44, 56
Sse9I AATT 6 cut(s) 76, 529, 592, 638, 696, 908
SspMI CTAG 2 cut(s) 23, 597
StyD4I CCNGG 2 cut(s) 116, 577
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 861
TaiI ACGT 1 cut(s) 402
TasI AATT 6 cut(s) 76, 529, 592, 638, 696, 908
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 4 cut(s) 57, 297, 591, 872
Tru9I TTAA 4 cut(s) 57, 297, 591, 872
TscAI CASTG 2 cut(s) 106, 505
TseFI GTSAC 2 cut(s) 290, 811
TseI GCWGC 3 cut(s) 254, 707, 933
Tsp45I GTSAC 2 cut(s) 290, 811
TspDTI ATGAA 3 cut(s) 96, 265, 637
TspRI CASTG 2 cut(s) 106, 505
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 731
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 638
XspI CTAG 2 cut(s) 23, 597
ZraI GACGTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.