Rh3CG364300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000153
Physical Location & Seq
Forward (+)
45672111 .. 45681527
9417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG364300.1

Sequence Viewer

Length: 540 bp
ATGCTGCCATCGAATTTGGCTGGTGAGAAAAGGAAGAAGAGGAAAGCTGCTTCCACCTTGAGACCGAGTGGGGTTACTAAGAGAAAGGCTATAGATGATGCCTCACCCGCTATCCTAAGGAGGAGTTCTCGGGTTGCCAACATGAGCTTTTCTAAGCGTAAATCGTCGTCCAAGGGTGTTGTTTATGTTGATCTTAGTGACGCACCTAGCGATGATGGGAAGGGTAGCCCCCTTAGTGATAACGCGGAATCCCTTGGAGATGAGGATGATCAGGGTGGATCATTTTTGTTGACAATTGGAAGGACATCATTTGAGCCGCATCTCCCTGAGACAGCACTGGGGGACGAAAGCGTTACTGCTGCAATCTTGGTCAGTATAGGGGTTCCGTTTGAACCCAAATCGCCACCCACCGTTGGACTGCTCAACCCGCGCAAAGCTCATGACCAAGGCCCTAGAGCTTGGCTACTCGGGCATCGTCTACAACCATACGATCAGCGGCGTCATTACGGTGCCGGTGAGCATCGAGATGCACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.29

Weight (kDa)

9.55

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 478
AccII CGCG 2 cut(s) 245, 430
AciI CCGC 5 cut(s) 108, 245, 317, 428, 496
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 1 cut(s) 392
AluBI AGCT 4 cut(s) 47, 147, 437, 458
AluI AGCT 4 cut(s) 47, 147, 437, 458
Alw26I GTCTC 2 cut(s) 55, 323
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 2 cut(s) 129, 467
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 3 cut(s) 4, 47, 359
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 35, 96, 527
AvaI CYCGRG 2 cut(s) 129, 467
AxyI CCTNAGG 1 cut(s) 116
BanI GGYRCC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 34, 346
BccI CCATC 2 cut(s) 16, 209
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 55, 323
BfaI CTAG 2 cut(s) 207, 453
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 5 cut(s) 5, 48, 317, 360, 497
BlsI GCNGC 5 cut(s) 6, 49, 318, 361, 498
BmeT110I CYCGRG 2 cut(s) 129, 467
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 384, 511
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 5 cut(s) 88, 328, 481, 517, 529
BmuI ACTGGG 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpuEI CTTGAG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 171, 253, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 171, 253, 445
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 34, 346
Bsh1236I CGCG 2 cut(s) 245, 430
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 509
BsiHKCI CYCGRG 2 cut(s) 129, 467
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 55, 323
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 2 cut(s) 129, 467
Bsp143I GATC 4 cut(s) 190, 268, 278, 490
BspACI CCGC 5 cut(s) 108, 245, 317, 428, 496
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 2 cut(s) 245, 430
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 384, 511
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 1 cut(s) 342
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 3 cut(s) 171, 253, 445
BssMI GATC 4 cut(s) 190, 268, 278, 490
BssNI GRCGYC 1 cut(s) 499
BssT1I CCWWGG 3 cut(s) 171, 253, 445
Bst4CI ACNGT 2 cut(s) 412, 509
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 499
BstDEI CTNAG 6 cut(s) 78, 116, 153, 194, 233, 327
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 245, 430
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 4 cut(s) 193, 271, 281, 493
BstMAI GTCTC 2 cut(s) 55, 323
BstMBI GATC 4 cut(s) 190, 268, 278, 490
BstMWI GCNNNNNNNGC 3 cut(s) 107, 427, 469
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 2 cut(s) 245, 430
BstV1I GCAGC 2 cut(s) 34, 346
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 335
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 2 cut(s) 209, 488
CviAII CATG 2 cut(s) 142, 440
DdeI CTNAG 6 cut(s) 78, 116, 153, 194, 233, 327
DpnI GATC 4 cut(s) 192, 270, 280, 492
DpnII GATC 4 cut(s) 190, 268, 278, 490
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 171, 253, 445
Eco31I GGTCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 129, 467
EcoO109I RGGNCCY 1 cut(s) 449
EcoT14I CCWWGG 3 cut(s) 171, 253, 445
ErhI CCWWGG 3 cut(s) 171, 253, 445
FaeI CATG 2 cut(s) 145, 443
FaiI YATR 6 cut(s) 92, 143, 186, 377, 441, 487
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 141, 439
FauI CCCGC 2 cut(s) 115, 435
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 5, 48, 317, 360, 497
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 5 cut(s) 5, 48, 317, 360, 497
FspBI CTAG 2 cut(s) 207, 453
GlaI GCGC 1 cut(s) 431
GluI GCNGC 5 cut(s) 5, 48, 317, 360, 497
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 513
HgaI GACGC 2 cut(s) 209, 488
HhaI GCGC 1 cut(s) 432
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 2 cut(s) 145, 443
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 513
HphI GGTGA 3 cut(s) 35, 96, 527
Hpy166II GTNNAC 2 cut(s) 291, 479
Hpy188III TCNNGA 2 cut(s) 440, 524
Hpy8I GTNNAC 2 cut(s) 291, 479
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 214, 294
HpyCH4III ACNGT 2 cut(s) 412, 509
HpyCH4V TGCA 2 cut(s) 362, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 427, 469
HpyF3I CTNAG 6 cut(s) 78, 116, 153, 194, 233, 327
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 2 cut(s) 145, 443
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 190, 268, 278, 490
LpnPI CCDG 5 cut(s) 6, 257, 323, 339, 526
Lsp1109I GCAGC 2 cut(s) 34, 346
LweI GCATC 5 cut(s) 88, 328, 481, 517, 529
MaeI CTAG 2 cut(s) 207, 453
MaeIII GTNAC 3 cut(s) 73, 197, 352
MalI GATC 4 cut(s) 192, 270, 280, 492
MboI GATC 4 cut(s) 190, 268, 278, 490
MboII GAAGA 2 cut(s) 46, 49
MfeI CAATTG 1 cut(s) 294
MluCI AATT 2 cut(s) 13, 294
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 4 cut(s) 33, 112, 114, 256
MslI CAYNNNNRTG 2 cut(s) 507, 525
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 1 cut(s) 513
MunI CAATTG 1 cut(s) 294
MvnI CGCG 2 cut(s) 245, 430
MwoI GCNNNNNNNGC 3 cut(s) 107, 427, 469
NdeII GATC 4 cut(s) 190, 268, 278, 490
NlaIII CATG 2 cut(s) 145, 443
NlaIV GGNNCC 2 cut(s) 384, 511
NmuCI GTSAC 1 cut(s) 197
PagI TCATGA 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 5 cut(s) 6, 49, 318, 361, 498
PspN4I GGNNCC 2 cut(s) 384, 511
PspPI GGNCC 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 507, 525
SatI GCNGC 5 cut(s) 5, 48, 317, 360, 497
Sau3AI GATC 4 cut(s) 190, 268, 278, 490
Sau96I GGNCC 1 cut(s) 449
SetI ASST 6 cut(s) 49, 59, 149, 208, 439, 460
SfaNI GCATC 5 cut(s) 88, 328, 481, 517, 529
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 507, 525
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 13, 294
SsiI CCGC 5 cut(s) 108, 245, 317, 428, 496
SspMI CTAG 2 cut(s) 207, 453
StyI CCWWGG 3 cut(s) 171, 253, 445
TaaI ACNGT 2 cut(s) 412, 509
TaqI TCGA 2 cut(s) 11, 523
TaqII GACCGA 1 cut(s) 79
TasI AATT 2 cut(s) 13, 294
TauI GCSGC 2 cut(s) 319, 499
TfiI GAWTC 1 cut(s) 248
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 3 cut(s) 4, 47, 359
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 342
XapI RAATTY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 2 cut(s) 207, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.