RchiOBHm_Chr5g0047301

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000153
Physical Location & Seq
Forward (+)
43626212 .. 43629819
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32523

Sequence Viewer

Length: 1848 bp
ATGTTGGATGATGTAAGTAATTTCATTTGGCAGCCCTATCTCCAGCCTTCTGAGTTCGAGACCTTTTCATTTTCTGGTAGAGAAGAGCAGTGTGCTACTGCTCTAGGTCGTGTTGAGCTCTACTTGACTATTTGCCCAAATTTTATCCCATCCATCAGTGAGGATAAGGAGGACCTGGATCTTTTCACTGATGTTTATTCTCCTGATAGAGTGATGCGGCAACTTGGTTACCTTCAAGATGTTCCCTCGCCTCATCCTCGCTCTCTCAACTCGAAGATTAGGCATTGCTCTCCTATGGAACTTAGATGTGTACTTGATTTCTCTGGCAGAATTGCGGACCTCCCATCTCAGTTGCCAGGGAATGCTGCAAATGCTAACGTTTCCCATGCTTATAGTTGCTATTGGAGGGGGGTGTTGTGCAGGTTCAAGCTCTTTGTGGAAGCCAGCAGCCCTCAGTTAGAATTGGGACCTATTACCAGCAGTAGGTTGGCTAGTCCCAAGACTGTACTGACTTATGCTGAAAAGCATAACCTCACCTATACTGAAGTATACAGCGATGGTACTAGAAAGATTGTCGATTATTTGAAAGGTTTTGAAGCTAAGGGTGAGAAGAACGAAGGAAGAAAGCATGACAAGAAGGCAAGTGACAAGGGTAATGTGAAGGAACAAAACACCCAAAATCCTATTCGGCGCTTCAAGCCCAAAGTGGATTTTGATAAATTCATGCATATGACCTGTCATGGAGTCAAGTTGATGATTCCTCCAAGCACGTTGCTTCAAAAGAACAAGGAGGTGAAGAAGAAAACATCTTCAACTTCCCGAGCAAGTGGTACTTCTCATGCAAAGCAAGTGAATGCTACCAGTTTTGAAGTGAAAAAAGGGGCGAAGAGGAAGGCTAATGTAGATTTTGATGTCCCTCTTCGTCGAAGCAATCGTGTAAAGTCTATGAGTTCTACTTCTCCTCGTGGTCCTCCAGTTTATCTTGAGTTGGCAGAGTCTGATCACGGAGAGGATTCTCAAAGGGGTCCAACTGATTCTTCTAAAGAGGACCATACTAATTTTTCAAAAGTGGCATCTGATCATGTGCTTGAAATGCCTCCAATGGATGCAATTAATCGAGATGGTGACCTCCAATGGATGCAATTAATCGAGATGGCAATAGGTGGTGTGAGTAATGACAATCAGGTTGACGCAGAGTTCGAGCCTTTGCAGCACAGTCCAAGTGAGAATGAAAATAATGATCAGGAGCAGAATCATCCTTCGGATGTCGGTGAGAGTAATGACGGGGTTGGTCATGACACAGCAGTACATTGTTTATTGGTTGAGTCTAATAAGCATGCTCTAGAGGTTGATAAGATGACTATCATTGAGACTCAAGGCCTTGACCCAAGCTTGCCTGCTAAAGGGTTGACTAGTGAGTGGGCGACTCATATGAACAACTTCATGATTCGATTTGCTTCTAAAGAGGAGTCCGCTCCAAGCATTGCTGACGTTGCGCCAACATTGAATGGAGACACTGCTGATTTTGTGGGCATGAAAATTCCTTCAGAGTTAGCGGGTCCTTTAGCTAGATTTGCTGAGAGATATAGTAGGGGAGATATCTTTAACTTAATTAATCGAGACTATACTTCAAGAAAGAAGTGCGAGTTGGTTAAGGAACTTGGCATGATGTTGTACAGCATGGAAGTTTGTCAGATAAAAGATGGAGAAGTGTTCCTTATTTGGAGAGATGCTTGCTGTGATTTCATGGGGGCGGGTCTTAATGTTGGCTTCCTATTGGATTCCTTAAAACAAGGTGCACAACACTTCTTTGTTTATATGATAAGGCCTGGAGGATCAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

615

Amino Acids

68.79

Weight (kDa)

5.76

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 1475
AccI GTMKAC 1 cut(s) 549
AciI CCGC 5 cut(s) 217, 335, 1473, 1556, 1754
AclI AACGTT 1 cut(s) 378
AclWI GGATC 2 cut(s) 186, 1843
AcsI RAATTY 3 cut(s) 139, 719, 1539
AcuI CTGAAG 2 cut(s) 564, 1530
AfaI GTAC 6 cut(s) 312, 507, 562, 832, 1308, 1676
AfiI CCNNNNNNNGG 2 cut(s) 483, 1403
AhlI ACTAGT 1 cut(s) 1412
AjnI CCWGG 3 cut(s) 174, 355, 1828
AjuI GAANNNNNNNTTGG 6 cut(s) 669, 701, 1021, 1053, 1631, 1663
AluBI AGCT 5 cut(s) 118, 430, 599, 1392, 1568
AluI AGCT 5 cut(s) 118, 430, 599, 1392, 1568
Alw21I GWGCWC 2 cut(s) 120, 1801
Alw26I GTCTC 4 cut(s) 53, 1364, 1506, 1614
Alw44I GTGCAC 1 cut(s) 1797
AlwI GGATC 2 cut(s) 186, 1843
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 1 cut(s) 819
AoxI GGCC 2 cut(s) 1378, 1826
ApaLI GTGCAC 1 cut(s) 1797
ApeKI GCWGC 4 cut(s) 31, 365, 447, 1210
ApoI RAATTY 3 cut(s) 139, 719, 1539
ArsI GACNNNNNNTTYG 2 cut(s) 1181, 1213
AseI ATTAAT 3 cut(s) 1113, 1145, 1614
Asp700I GAANNNNTTC 1 cut(s) 1439
AspLEI GCGC 2 cut(s) 693, 1498
AspS9I GGNCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
AsuHPI GGTGA 5 cut(s) 526, 617, 805, 1136, 1283
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
BaeGI GKGCMC 1 cut(s) 1801
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 963
Bbv12I GWGCWC 2 cut(s) 120, 1801
BbvI GCAGC 4 cut(s) 43, 352, 459, 1222
BccI CCATC 7 cut(s) 157, 161, 352, 551, 1115, 1147, 1697
BciT130I CCWGG 3 cut(s) 176, 357, 1830
BclI TGATCA 3 cut(s) 1000, 1078, 1240
BcoDI GTCTC 4 cut(s) 53, 1364, 1506, 1614
BcuI ACTAGT 1 cut(s) 1412
BfaI CTAG 7 cut(s) 104, 492, 564, 1343, 1413, 1569, 1846
BfoI RGCGCY 1 cut(s) 694
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 5 cut(s) 32, 218, 366, 448, 1211
BlsI GCNGC 5 cut(s) 33, 219, 367, 449, 1212
Bme1390I CCNGG 3 cut(s) 176, 357, 1830
Bme18I GGWCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
BmeT110I CYCGRG 1 cut(s) 819
BmgT120I GGNCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
BmiI GGNNCC 3 cut(s) 468, 1026, 1560
BmrFI CCNGG 3 cut(s) 176, 357, 1830
BmsI GCATC 5 cut(s) 204, 1082, 1096, 1128, 1720
BpmI CTGGAG 2 cut(s) 26, 957
Bpu10I CCTNAGC 1 cut(s) 600
BpuEI CTTGAG 2 cut(s) 1004, 1359
BsaBI GATNNNNATC 1 cut(s) 1361
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 1403
Bse1I ACTGG 2 cut(s) 861, 974
Bse3DI GCAATG 2 cut(s) 283, 1482
Bse8I GATNNNNATC 1 cut(s) 1361
BseBI CCWGG 3 cut(s) 176, 357, 1830
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 7 cut(s) 13, 149, 253, 1111, 1143, 1255, 1270
BseJI GATNNNNATC 1 cut(s) 1361
BseLI CCNNNNNNNGG 2 cut(s) 483, 1403
BseMI GCAATG 2 cut(s) 283, 1482
BseMII CTCAG 4 cut(s) 42, 362, 467, 1569
BseNI ACTGG 2 cut(s) 861, 974
BseRI GAGGAG 2 cut(s) 951, 1481
BseSI GKGCMC 1 cut(s) 1801
BseXI GCAGC 4 cut(s) 43, 352, 459, 1222
BsgI GTGCAG 1 cut(s) 439
BshFI GGCC 2 cut(s) 1380, 1828
BsiHKAI GWGCWC 2 cut(s) 120, 1801
BsiHKCI CYCGRG 1 cut(s) 819
BslFI GGGAC 3 cut(s) 480, 480, 899
BslI CCNNNNNNNGG 2 cut(s) 483, 1403
BsmAI GTCTC 4 cut(s) 53, 1364, 1506, 1614
BsmFI GGGAC 3 cut(s) 480, 480, 899
BsmI GAATGC 2 cut(s) 367, 859
BsnI GGCC 2 cut(s) 1380, 1828
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 120, 1801
Bsp1407I TGTACA 1 cut(s) 1674
Bsp143I GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
BspACI CCGC 5 cut(s) 217, 335, 1473, 1556, 1754
BspANI GGCC 2 cut(s) 1380, 1828
BspCNI CTCAG 4 cut(s) 43, 361, 466, 1570
BspHI TCATGA 2 cut(s) 1294, 1443
BspLI GGNNCC 3 cut(s) 468, 1026, 1560
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 2 cut(s) 186, 1843
BspQI GCTCTTC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 1475
BsrDI GCAATG 2 cut(s) 283, 1482
BsrGI TGTACA 1 cut(s) 1674
BsrI ACTGG 2 cut(s) 861, 974
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
BssNAI GTATAC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 963
Bst1107I GTATAC 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 963
Bst2UI CCWGG 3 cut(s) 176, 357, 1830
Bst4CI ACNGT 2 cut(s) 505, 1217
Bst6I CTCTTC 3 cut(s) 78, 881, 924
BstAUI TGTACA 1 cut(s) 1674
BstC8I GCNNGC 5 cut(s) 445, 1338, 1394, 1398, 1735
BstDEI CTNAG 6 cut(s) 51, 302, 348, 453, 600, 1578
BstEII GGTNACC 2 cut(s) 227, 1124
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 7 cut(s) 13, 149, 253, 1111, 1143, 1255, 1270
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 2 cut(s) 693, 1498
BstKTI GATC 5 cut(s) 181, 1003, 1081, 1243, 1838
BstMAI GTCTC 4 cut(s) 53, 1364, 1506, 1614
BstMBI GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
BstMWI GCNNNNNNNGC 6 cut(s) 371, 697, 1093, 1210, 1493, 1574
BstNI CCWGG 3 cut(s) 176, 357, 1830
BstNSI RCATGY 1 cut(s) 1340
BstPI GGTNACC 2 cut(s) 227, 1124
BstSCI CCNGG 3 cut(s) 174, 355, 1828
BstSLI GKGCMC 1 cut(s) 1801
BstV1I GCAGC 4 cut(s) 43, 352, 459, 1222
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 1380, 1828
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 7 cut(s) 13, 149, 253, 1111, 1143, 1255, 1270
BtsI GCAGTG 2 cut(s) 95, 1515
BtsIMutI CAGTG 4 cut(s) 95, 163, 186, 1515
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 5 cut(s) 445, 1338, 1394, 1398, 1735
CaiI CAGNNNCTG 1 cut(s) 998
CciI TCATGA 2 cut(s) 1294, 1443
CfoI GCGC 2 cut(s) 693, 1498
Cfr13I GGNCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
CseI GACGC 1 cut(s) 1199
Csp6I GTAC 6 cut(s) 311, 506, 561, 831, 1307, 1675
CviQI GTAC 6 cut(s) 311, 506, 561, 831, 1307, 1675
DdeI CTNAG 6 cut(s) 51, 302, 348, 453, 600, 1578
DpnI GATC 5 cut(s) 180, 1002, 1080, 1242, 1837
DpnII GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
Eam1104I CTCTTC 3 cut(s) 78, 881, 924
EarI CTCTTC 3 cut(s) 78, 881, 924
Ecl136II GAGCTC 1 cut(s) 118
Eco147I AGGCCT 2 cut(s) 1380, 1828
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 1600
Eco47I GGWCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 564, 1530
Eco88I CYCGRG 1 cut(s) 819
Eco91I GGTNACC 2 cut(s) 227, 1124
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 3 cut(s) 172, 467, 1559
EcoO65I GGTNACC 2 cut(s) 227, 1124
EcoRII CCWGG 3 cut(s) 174, 355, 1828
EcoRV GATATC 1 cut(s) 1600
EcoT22I ATGCAT 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 120
FalI AAGNNNNNCTT 4 cut(s) 817, 849, 1701, 1733
FaqI GGGAC 3 cut(s) 480, 480, 899
FauI CCCGC 2 cut(s) 1549, 1747
FauNDI CATATG 2 cut(s) 729, 1431
FbaI TGATCA 3 cut(s) 1000, 1078, 1240
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 5 cut(s) 32, 218, 366, 448, 1211
FokI GGATG 7 cut(s) 20, 136, 240, 1118, 1150, 1242, 1277
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 5 cut(s) 32, 218, 366, 448, 1211
FspBI CTAG 7 cut(s) 104, 492, 564, 1343, 1413, 1569, 1846
GlaI GCGC 2 cut(s) 692, 1497
GluI GCNGC 5 cut(s) 32, 218, 366, 448, 1211
GsuI CTGGAG 2 cut(s) 26, 957
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 2 cut(s) 1380, 1828
HgaI GACGC 1 cut(s) 1199
HhaI GCGC 2 cut(s) 693, 1498
Hin6I GCGC 2 cut(s) 691, 1496
HinP1I GCGC 2 cut(s) 691, 1496
HincII GTYRAC 2 cut(s) 1189, 1410
HindII GTYRAC 2 cut(s) 1189, 1410
HindIII AAGCTT 1 cut(s) 1390
HphI GGTGA 5 cut(s) 526, 617, 805, 1136, 1283
Hpy166II GTNNAC 5 cut(s) 311, 550, 1189, 1410, 1799
Hpy188I TCNGA 7 cut(s) 52, 1000, 1078, 1264, 1549, 1695, 1840
Hpy8I GTNNAC 5 cut(s) 311, 550, 1189, 1410, 1799
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 8 cut(s) 57, 242, 611, 631, 655, 886, 1269, 1554
HpyCH4III ACNGT 2 cut(s) 505, 1217
HpyCH4IV ACGT 3 cut(s) 378, 770, 1491
HpyCH4V TGCA 8 cut(s) 368, 420, 727, 842, 1109, 1141, 1210, 1799
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 697, 1093, 1210, 1493, 1574
HpyF3I CTNAG 6 cut(s) 51, 302, 348, 453, 600, 1578
HpySE526I ACGT 3 cut(s) 378, 770, 1491
HspAI GCGC 2 cut(s) 691, 1496
Ksp22I TGATCA 3 cut(s) 1000, 1078, 1240
Kzo9I GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 1246, 1480
Lsp1109I GCAGC 4 cut(s) 43, 352, 459, 1222
LweI GCATC 5 cut(s) 204, 1082, 1096, 1128, 1720
MaeI CTAG 7 cut(s) 104, 492, 564, 1343, 1413, 1569, 1846
MaeII ACGT 3 cut(s) 378, 770, 1491
MaeIII GTNAC 3 cut(s) 227, 644, 1124
MalI GATC 5 cut(s) 180, 1002, 1080, 1242, 1837
MbiI CCGCTC 1 cut(s) 1475
MboI GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 120, 1801
MlyI GAGTC 6 cut(s) 753, 1004, 1334, 1366, 1420, 1478
MmeI TCCRAC 1 cut(s) 1052
Mph1103I ATGCAT 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 1439
MseI TTAA 8 cut(s) 1113, 1145, 1605, 1610, 1614, 1653, 1761, 1787
MslI CAYNNNNRTG 1 cut(s) 728
MspR9I CCNGG 3 cut(s) 176, 357, 1830
Mva1269I GAATGC 2 cut(s) 367, 859
MvaI CCWGG 3 cut(s) 176, 357, 1830
MwoI GCNNNNNNNGC 6 cut(s) 371, 697, 1093, 1210, 1493, 1574
NdeI CATATG 2 cut(s) 729, 1431
NdeII GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
NlaIV GGNNCC 3 cut(s) 468, 1026, 1560
NmuCI GTSAC 2 cut(s) 644, 1124
NsiI ATGCAT 1 cut(s) 729
NspI RCATGY 1 cut(s) 1340
PacI TTAATTAA 1 cut(s) 1614
PaeI GCATGC 1 cut(s) 1340
PagI TCATGA 2 cut(s) 1294, 1443
PceI AGGCCT 2 cut(s) 1380, 1828
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 2 cut(s) 931, 1197
PctI GAATGC 2 cut(s) 367, 859
PdmI GAANNNNTTC 1 cut(s) 1439
PfeI GAWTC 6 cut(s) 757, 1013, 1034, 1252, 1447, 1781
PkrI GCNGC 5 cut(s) 33, 219, 367, 449, 1212
PleI GAGTC 6 cut(s) 752, 1003, 1333, 1366, 1420, 1477
PpsI GAGTC 6 cut(s) 752, 1003, 1333, 1366, 1420, 1477
PpuMI RGGWCCY 3 cut(s) 172, 467, 1559
PshBI ATTAAT 3 cut(s) 1113, 1145, 1614
Psp124BI GAGCTC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 378
Psp5II RGGWCCY 3 cut(s) 172, 467, 1559
Psp6I CCWGG 3 cut(s) 174, 355, 1828
PspEI GGTNACC 2 cut(s) 227, 1124
PspGI CCWGG 3 cut(s) 174, 355, 1828
PspN4I GGNNCC 3 cut(s) 468, 1026, 1560
PspPI GGNCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
PspPPI RGGWCCY 3 cut(s) 172, 467, 1559
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 6 cut(s) 312, 507, 562, 832, 1308, 1676
RsaNI GTAC 6 cut(s) 311, 506, 561, 831, 1307, 1675
RseI CAYNNNNRTG 1 cut(s) 728
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 8 cut(s) 1113, 1145, 1605, 1610, 1614, 1653, 1761, 1787
SatI GCNGC 5 cut(s) 32, 218, 366, 448, 1211
Sau3AI GATC 5 cut(s) 178, 1000, 1078, 1240, 1835
Sau96I GGNCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
SchI GAGTC 6 cut(s) 753, 1004, 1334, 1366, 1420, 1478
ScrFI CCNGG 3 cut(s) 176, 357, 1830
SduI GDGCHC 2 cut(s) 120, 1801
SfaNI GCATC 5 cut(s) 204, 1082, 1096, 1128, 1720
SinI GGWCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 983, 1374
SmoI CTYRAG 2 cut(s) 983, 1374
SpeI ACTAGT 1 cut(s) 1412
SphI GCATGC 1 cut(s) 1340
SseBI AGGCCT 2 cut(s) 1380, 1828
SsiI CCGC 5 cut(s) 217, 335, 1473, 1556, 1754
SspMI CTAG 7 cut(s) 104, 492, 564, 1343, 1413, 1569, 1846
SstI GAGCTC 1 cut(s) 120
StuI AGGCCT 2 cut(s) 1380, 1828
StyD4I CCNGG 3 cut(s) 174, 355, 1828
TaaI ACNGT 2 cut(s) 505, 1217
TaiI ACGT 3 cut(s) 381, 773, 1494
TaqI TCGA 9 cut(s) 57, 272, 576, 925, 1117, 1149, 1200, 1450, 1618
TatI WGTACW 4 cut(s) 310, 505, 1306, 1674
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 6 cut(s) 757, 1013, 1034, 1252, 1447, 1781
Tru1I TTAA 8 cut(s) 1113, 1145, 1605, 1610, 1614, 1653, 1761, 1787
Tru9I TTAA 8 cut(s) 1113, 1145, 1605, 1610, 1614, 1653, 1761, 1787
TscAI CASTG 4 cut(s) 95, 163, 193, 1522
TseFI GTSAC 2 cut(s) 644, 1124
TseI GCWGC 4 cut(s) 31, 365, 447, 1210
Tsp45I GTSAC 2 cut(s) 644, 1124
TspDTI ATGAA 8 cut(s) 13, 57, 712, 1245, 1432, 1448, 1550, 1735
TspGWI ACGGA 1 cut(s) 1020
TspRI CASTG 4 cut(s) 95, 163, 193, 1522
VneI GTGCAC 1 cut(s) 1797
VpaK11BI GGWCC 7 cut(s) 172, 337, 467, 968, 1025, 1048, 1559
VspI ATTAAT 3 cut(s) 1113, 1145, 1614
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 3 cut(s) 139, 719, 1539
XbaI TCTAGA 1 cut(s) 1342
XceI RCATGY 1 cut(s) 1340
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 1439
XspI CTAG 7 cut(s) 104, 492, 564, 1343, 1413, 1569, 1846
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.