Rroxscaffold_4G00319260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000153
Physical Location & Seq
Forward (+)
46878287 .. 46903643
25357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319260.1

Sequence Viewer

Length: 219 bp
ATGGGTGAATGCACAAACAGGCCGAGAGAAGGACTACGAGTGCACGGTCAAGCTCAAAGCAATAATTTCGGTGAGAGGTCATTCAAGAATGGAATCCCCACAAGGAATGACCACACCAATATATTTATACTCACCACGGGGAGCACGGTGGAAGCTGCCGCAAGTCCGGAAGTGGCGCCACCGAGCCGAAACGATCTCCGGTCGCCGTATTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.91

Weight (kDa)

6.72

Isoelectric Point (pI)

65.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 2 cut(s) 53, 155
AluI AGCT 2 cut(s) 53, 155
Alw21I GWGCWC 2 cut(s) 45, 146
Alw44I GTGCAC 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 1 cut(s) 20
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 3 cut(s) 17, 83, 124
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 45, 146
BbvI GCAGC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 2 cut(s) 156, 159
BlsI GCNGC 2 cut(s) 157, 160
BmiI GGNNCC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 166, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 45, 146
BsiSI CCGG 2 cut(s) 167, 199
BslI CCNNNNNNNGG 1 cut(s) 29
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 45, 146
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 47, 148
BstACI GRCGYC 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 135
CfoI GCGC 1 cut(s) 178
CviJI RGCY 4 cut(s) 22, 53, 155, 186
CviKI_1 RGCY 4 cut(s) 22, 53, 155, 186
DinI GGCGCC 1 cut(s) 177
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
FaiI YATR 2 cut(s) 122, 128
Fnu4HI GCNGC 2 cut(s) 156, 159
Fsp4HI GCNGC 2 cut(s) 156, 159
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 156, 159
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 167, 199
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 93
HpaII CCGG 2 cut(s) 167, 199
HphI GGTGA 3 cut(s) 17, 83, 124
Hpy166II GTNNAC 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 85, 167
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 47, 148
HpyCH4V TGCA 2 cut(s) 12, 43
Hsp92I GRCGYC 1 cut(s) 176
HspAI GCGC 1 cut(s) 176
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 3 cut(s) 4, 180, 212
Lsp1109I GCAGC 1 cut(s) 142
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 45, 146
MluCI AATT 1 cut(s) 64
Mly113I GGCGCC 1 cut(s) 176
MnlI CCTC 1 cut(s) 69
MroI TCCGGA 1 cut(s) 166
MspI CCGG 2 cut(s) 167, 199
Mva1269I GAATGC 1 cut(s) 14
NarI GGCGCC 1 cut(s) 176
NdeII GATC 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 48
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 157, 160
PluTI GGCGCC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 177
SatI GCNGC 2 cut(s) 156, 159
Sau3AI GATC 1 cut(s) 193
SduI GDGCHC 2 cut(s) 45, 146
SetI ASST 3 cut(s) 55, 80, 157
SfoI GGCGCC 1 cut(s) 177
Sse9I AATT 1 cut(s) 64
SsiI CCGC 1 cut(s) 159
SspDI GGCGCC 1 cut(s) 175
TaaI ACNGT 2 cut(s) 47, 148
TasI AATT 1 cut(s) 64
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 93
TseI GCWGC 1 cut(s) 155
VneI GTGCAC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.