Rmu_sc0002268.1_g000026

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002268.1
OG0000153
Physical Location & Seq
Reverse (-)
128642 .. 132258
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002268.1_g000026.1.cds

Sequence Viewer

Length: 3012 bp
atggctcgagcatatgagtcttctcagcccattgagcttcgtgaccaccacttctcactggaggatggtctcattcctacttctaccgcgggggattgtgaaggtagctcagatgagccatttcgtgaattttctgagcgttttgtttcttccaagtccatatccaggttgcttattgagagaggagagtaccccgcagcgcctatatgtttccggtatcctgcgaggatcactgcgggttggccagaatgggttagttttgaggttcagcaggaagagcttgaggaggcccttataggggctggagtgaagatttcactgttcatttctggcttttgtgaggtttacaaagacgacatttgcctccgccatgtgatacggagatggagtcatgaaactcacacattcatctgttcttggggggaatttactcattctctggaagatgtttgcaatattatgagaatcccaatcattggggatagtaatccttttaatatagagttggacagggcccagaagaagaagctacaggttttagagaagggtgcttataattccagagaagtgttccgtttttgcaactgggtgagacatttttggggttcaacggatggaggcaagtttaagcatggtgcgggttttggctctggttgtcgagttgaagctatgtttgcttattggttgagcaggtttatttttgcggattttccctatgagaatgtgcagcaacgagtctttccattggccattatgctagcagctggtacttgttttccgcttgctcctctctttcttggtcatctatacaggaagcttgatctgatttcaaaggatgataaagaaggtgcggggcagtatggtattgattctttagtatccagcttctttcttcaagtgttcgtatgggagagattcaaaggtttggccgtggaacctgtaaccccggagtcccttcaccaacttgagggaggcaaaagagatttcaatctagtaggattcccgttgtgctgtagatggttaagaaggaaagccaagaagggtgcatttaagcctgatgtcctagatgacattggacaattcaatttcaggccgtattttactgttcacggcttccagacatttcctttcttttatccagaggctaactcatcaccattcttggaatccgttgagttgcttctagccactagtgcgcagtccataatagcatatggtgatttttttgaccctgcgatggagatgtattccccccatagagttaagaggcaatttggcatcgatcaggatgtgccatcgcatctatcctacggtggacatcttgggaattgcattatggctttcactcggacagatggtatctcttgcagcggtatactttctgatagtcttgggaagaaggatagtgtcggttctcctacattagcattcttggaattttgggagctgcagctgtgcgagttcaagaggtttattaagactggtagtactaggttgtgtccgaaagttagtagtgagaacaagaggctgctccgcagtagcactgtcatgggtgtgatgtctagactgaaccttccctataccgaggtatactcgaatggtatagagcgagtggttggtcatcttaaaggtgggaatgattctgtggcggacttgattaccacaagaatagagaagggtgacaagtctgtggtaaaaggcaaagtcagaactactaagaatggagaagagagtaaaaggaaggttcaccgcttcaaacctaaggtggcaaaggaccgcattcctcccctggttgtcaaaagcgcctttggtgttagagtgatactaccgtcggatttggttgatggaaaagggaagaagaggaaaactgcttctagctcaaaacagagtagagctactaagctaaaggttacacgtgatgcctcacccactgtcctcaggcgaagttcccgcgttgccaacatgagtttttcaaaacgtaaaccttcgtctaagggcgctgtttatgttgatcttagtgatgcgccaagtgacgacagcgagggtagcccccttagtgataatgttgacacatatgaggagaatgattctgacacttatgaggaaagggtctgtgatgatggtaaccaggacattggcactgatgatttggggaaagaatctgttgcagatggtagcctttgcgcgggtgaccataatgagccgggtggatcagttttgttgacagttggaaggacatcgtttgagccccacgtccctaagacagtaccaagggataatggtgttgctgctgtaatcttgaccaatagagggattccactttgtgctacctccgattgctctcttgctcctaactcagataaatcagaaaaggtgtcaaaagctaatttggagatgcgttttaggaaatttacttcttcttttgacactgaggatcgcttgagtattactattgatgatattgcacgcccattgagtagtatccaatcttcatttgagggtggaaaagtgccttcagagtttgtggctccactcactaaattcgcggaaaggtatggtggaggtagcttctctagcttgtttgcagaaggaaaaagtgcccgccagaagcaaaaattggttgaggagttcggttctgtgttgtatagcatggagactgaggaagtaaaaaatgaggagactttcttgatttggagggatgcatgtcgtgacatcatagattgggggcttaaagtcgactttatgcttgatcatttgaagcaagctgctagagatttttttggttatatgctcaggcccagtggatcagagagtagttgcagggagatcatccaaatggaggaagctatatcccagttgaggaaaaagcttttgcatcttgaacaaaaattaggagaggcgcgggaagacttacaccttaggcttggtgatgacattagctcagacagcatgtcctgcatattaggatcctcttgggttcctcaaagtcgtgcaagtcgtggcctgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1003

Amino Acids

112.28

Weight (kDa)

6.64

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
Acc16I TGCGCA 1 cut(s) 1197
Acc36I ACCTGC 1 cut(s) 681
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 3 cut(s) 1375, 1590, 2736
AccII CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
AclWI GGATC 6 cut(s) 236, 2218, 2442, 2812, 2961, 2974
AcoI YGGCCR 3 cut(s) 242, 747, 927
AcsI RAATTY 5 cut(s) 128, 425, 1436, 2408, 2540
AcuI CTGAAG 1 cut(s) 2499
AcvI CACGTG 1 cut(s) 1916
AdeI CACNNNGTG 1 cut(s) 2324
AfaI GTAC 4 cut(s) 191, 769, 1489, 2268
AflIII ACRYGT 1 cut(s) 1913
AhdI GACNNNNNGTC 1 cut(s) 2950
AhlI ACTAGT 1 cut(s) 1190
AjiI CACGTC 1 cut(s) 2254
AjnI CCWGG 3 cut(s) 164, 1788, 2127
AjuI GAANNNNNNNTTGG 2 cut(s) 2600, 2632
Alw26I GTCTC 4 cut(s) 74, 586, 2648, 2672
AlwI GGATC 6 cut(s) 236, 2218, 2442, 2812, 2961, 2974
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 8 cut(s) 242, 288, 513, 747, 927, 1091, 2795, 3001
ApaI GGGCCC 1 cut(s) 517
ApeKI GCWGC 9 cut(s) 197, 727, 761, 1368, 1447, 1450, 1528, 2288, 2765
ApoI RAATTY 5 cut(s) 128, 425, 1436, 2408, 2540
AspLEI GCGC 7 cut(s) 202, 1198, 1805, 2000, 2026, 2186, 2902
AspS9I GGNCC 5 cut(s) 289, 513, 514, 1774, 2796
AsuC2I CCSGG 2 cut(s) 947, 2205
AsuHPI GGTGA 9 cut(s) 601, 950, 1146, 1229, 1691, 1739, 1917, 2201, 2939
AsuNHI GCTAGC 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 1774
AxyI CCTNAGG 3 cut(s) 1761, 1937, 2918
BaeGI GKGCMC 2 cut(s) 517, 2602
BaeI ACNNNNGTAYC 2 cut(s) 1814, 1847
BalI TGGCCA 2 cut(s) 244, 749
BamHI GGATCC 1 cut(s) 2966
BanII GRGCYC 2 cut(s) 517, 2250
BarI GAAGNNNNNNTAC 2 cut(s) 2473, 2505
BbrPI CACGTG 1 cut(s) 1916
BbsI GAAGAC 2 cut(s) 12, 2913
BbvI GCAGC 9 cut(s) 209, 739, 773, 1380, 1434, 1462, 1515, 2275, 2752
BceAI ACGGC 3 cut(s) 914, 1078, 1126
BciT130I CCWGG 3 cut(s) 166, 1790, 2129
BciVI GTATCC 3 cut(s) 228, 889, 2492
BclI TGATCA 1 cut(s) 2749
BcnI CCSGG 2 cut(s) 947, 2205
BcoDI GTCTC 4 cut(s) 74, 586, 2648, 2672
BcuI ACTAGT 1 cut(s) 1190
BfmI CTRYAG 3 cut(s) 530, 1012, 1448
BfoI RGCGCY 3 cut(s) 203, 1806, 2001
BfuAI ACCTGC 1 cut(s) 681
BfuI GTATCC 3 cut(s) 228, 889, 2492
BisI GCNGC 9 cut(s) 198, 728, 762, 1369, 1448, 1451, 1529, 2289, 2766
BlsI GCNGC 9 cut(s) 199, 729, 763, 1370, 1449, 1452, 1530, 2290, 2767
BmcAI AGTACT 1 cut(s) 1489
Bme1390I CCNGG 5 cut(s) 166, 947, 1790, 2129, 2205
Bme18I GGWCC 1 cut(s) 1774
BmeRI GACNNNNNGTC 1 cut(s) 2950
BmeT110I CYCGRG 1 cut(s) 6
BmgBI CACGTC 1 cut(s) 2254
BmgT120I GGNCC 5 cut(s) 289, 513, 514, 1774, 2796
BmiI GGNNCC 5 cut(s) 515, 936, 2529, 2968, 2979
BmrFI CCNGG 5 cut(s) 166, 947, 1790, 2129, 2205
BmrI ACTGGG 3 cut(s) 595, 2793, 2848
BmsI GCATC 7 cut(s) 1287, 1309, 1909, 2011, 2385, 2689, 2884
BmtI GCTAGC 1 cut(s) 761
BmuI ACTGGG 3 cut(s) 595, 2793, 2848
BpiI GAAGAC 2 cut(s) 12, 2913
BplI GAGNNNNNCTC 4 cut(s) 1133, 1165, 1577, 1609
BpmI CTGGAG 2 cut(s) 80, 324
Bpu10I CCTNAGC 1 cut(s) 2792
BpuEI CTTGAG 3 cut(s) 302, 986, 2461
BpuMI CCSGG 2 cut(s) 947, 2205
Bsa29I ATCGAT 1 cut(s) 1281
BsaAI YACGTR 1 cut(s) 1916
BsaBI GATNNNNATC 2 cut(s) 486, 987
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 6 cut(s) 87, 930, 945, 1584, 1788, 2270
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse1I ACTGG 5 cut(s) 63, 590, 1486, 2799, 2854
Bse21I CCTNAGG 3 cut(s) 1761, 1937, 2918
Bse8I GATNNNNATC 2 cut(s) 486, 987
BseBI CCWGG 3 cut(s) 166, 1790, 2129
BseCI ATCGAT 1 cut(s) 1281
BseDI CCNNGG 6 cut(s) 87, 930, 945, 1584, 1788, 2270
BseGI GGATG 6 cut(s) 70, 619, 841, 1294, 2704, 2829
BseJI GATNNNNATC 2 cut(s) 486, 987
BseMII CTCAG 9 cut(s) 38, 123, 126, 1951, 2370, 2421, 2649, 2806, 2955
BseNI ACTGG 5 cut(s) 63, 590, 1486, 2799, 2854
BseRI GAGGAG 6 cut(s) 198, 299, 777, 2093, 2639, 2690
BseSI GKGCMC 2 cut(s) 517, 2602
BseXI GCAGC 9 cut(s) 209, 739, 773, 1380, 1434, 1462, 1515, 2275, 2752
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
BshFI GGCC 8 cut(s) 244, 290, 515, 749, 929, 1093, 2797, 3003
BshVI ATCGAT 1 cut(s) 1281
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 3 cut(s) 214, 947, 2204
BslFI GGGAC 2 cut(s) 937, 2240
BsmAI GTCTC 4 cut(s) 74, 586, 2648, 2672
BsmFI GGGAC 2 cut(s) 937, 2240
BsmI GAATGC 2 cut(s) 1427, 1779
BsnI GGCC 8 cut(s) 244, 290, 515, 749, 929, 1093, 2797, 3003
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 517, 2250, 2602
BspANI GGCC 8 cut(s) 244, 290, 515, 749, 929, 1093, 2797, 3003
BspCNI CTCAG 9 cut(s) 37, 122, 127, 1950, 2369, 2422, 2650, 2805, 2954
BspDI ATCGAT 1 cut(s) 1281
BspFNI CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 515, 936, 2529, 2968, 2979
BspMAI CTGCAG 1 cut(s) 1452
BspMI ACCTGC 1 cut(s) 681
BspOI GCTAGC 1 cut(s) 761
BspPI GGATC 6 cut(s) 236, 2218, 2442, 2812, 2961, 2974
BspQI GCTCTTC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 5 cut(s) 63, 590, 1486, 2799, 2854
BssECI CCNNGG 6 cut(s) 87, 930, 945, 1584, 1788, 2270
BssNAI GTATAC 2 cut(s) 1376, 1591
BssT1I CCWWGG 1 cut(s) 2270
Bst1107I GTATAC 2 cut(s) 1376, 1591
Bst2UI CCWGG 3 cut(s) 166, 1790, 2129
Bst4CI ACNGT 8 cut(s) 321, 1105, 1313, 1546, 1830, 1933, 2227, 2266
Bst6I CTCTTC 3 cut(s) 270, 1722, 1853
BstAPI GCANNNNNTGC 1 cut(s) 2955
BstBAI YACGTR 1 cut(s) 1916
BstC8I GCNNGC 5 cut(s) 759, 783, 2467, 2602, 2763
BstDSI CCRYGG 2 cut(s) 87, 930
BstEII GGTNACC 2 cut(s) 2123, 2189
BstF5I GGATG 6 cut(s) 70, 619, 841, 1294, 2704, 2829
BstFNI CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
BstH2I RGCGCY 3 cut(s) 203, 1806, 2001
BstHHI GCGC 7 cut(s) 202, 1198, 1805, 2000, 2026, 2186, 2902
BstMAI GTCTC 4 cut(s) 74, 586, 2648, 2672
BstMWI GCNNNNNNNGC 8 cut(s) 34, 277, 674, 1193, 2046, 2574, 2946, 2955
BstNI CCWGG 3 cut(s) 166, 1790, 2129
BstNSI RCATGY 2 cut(s) 2706, 2953
BstPI GGTNACC 2 cut(s) 2123, 2189
BstSCI CCNGG 5 cut(s) 164, 945, 1788, 2127, 2203
BstSFI CTRYAG 3 cut(s) 530, 1012, 1448
BstSLI GKGCMC 2 cut(s) 517, 2602
BstUI CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
BstV1I GCAGC 9 cut(s) 209, 739, 773, 1380, 1434, 1462, 1515, 2275, 2752
BstV2I GAAGAC 2 cut(s) 12, 2913
BstX2I RGATCY 1 cut(s) 2966
BstXI CCANNNNNNTGG 1 cut(s) 2135
BstYI RGATCY 1 cut(s) 2966
BstZ17I GTATAC 2 cut(s) 1376, 1591
Bsu15I ATCGAT 1 cut(s) 1281
Bsu36I CCTNAGG 3 cut(s) 1761, 1937, 2918
BsuI GTATCC 3 cut(s) 228, 889, 2492
BsuRI GGCC 8 cut(s) 244, 290, 515, 749, 929, 1093, 2797, 3003
BsuTUI ATCGAT 1 cut(s) 1281
BtgI CCRYGG 2 cut(s) 87, 930
BtgZI GCGATG 2 cut(s) 1250, 1281
BtrI CACGTC 1 cut(s) 2254
BtsCI GGATG 6 cut(s) 70, 619, 841, 1294, 2704, 2829
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 8 cut(s) 56, 231, 317, 1542, 1929, 2139, 2427, 2806
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 5 cut(s) 759, 783, 2467, 2602, 2763
CciI TCATGA 1 cut(s) 391
CfoI GCGC 7 cut(s) 202, 1198, 1805, 2000, 2026, 2186, 2902
Cfr13I GGNCC 5 cut(s) 289, 513, 514, 1774, 2796
Cfr42I CCGCGG 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 1281
Csp6I GTAC 4 cut(s) 190, 768, 1488, 2267
CviAII CATG 8 cut(s) 371, 392, 632, 1549, 1963, 2650, 2703, 2950
CviQI GTAC 4 cut(s) 190, 768, 1488, 2267
DraIII CACNNNGTG 1 cut(s) 2324
DriI GACNNNNNGTC 1 cut(s) 2950
EaeI YGGCCR 3 cut(s) 242, 747, 927
Eam1104I CTCTTC 3 cut(s) 270, 1722, 1853
Eam1105I GACNNNNNGTC 1 cut(s) 2950
EarI CTCTTC 3 cut(s) 270, 1722, 1853
EciI GGCGGA 2 cut(s) 356, 1664
Eco130I CCWWGG 1 cut(s) 2270
Eco24I GRGCYC 2 cut(s) 517, 2250
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 1774
Eco57I CTGAAG 1 cut(s) 2499
Eco72I CACGTG 1 cut(s) 1916
Eco81I CCTNAGG 3 cut(s) 1761, 1937, 2918
Eco88I CYCGRG 1 cut(s) 6
Eco91I GGTNACC 2 cut(s) 2123, 2189
EcoO109I RGGNCCY 2 cut(s) 289, 513
EcoO65I GGTNACC 2 cut(s) 2123, 2189
EcoRII CCWGG 3 cut(s) 164, 1788, 2127
EcoT14I CCWWGG 1 cut(s) 2270
EcoT22I ATGCAT 1 cut(s) 2704
EcoT38I GRGCYC 2 cut(s) 517, 2250
ErhI CCWWGG 1 cut(s) 2270
FaeI CATG 8 cut(s) 374, 395, 635, 1552, 1966, 2653, 2706, 2953
FaqI GGGAC 2 cut(s) 937, 2240
FatI CATG 8 cut(s) 370, 391, 631, 1548, 1962, 2649, 2702, 2949
FauI CCCGC 9 cut(s) 82, 202, 229, 631, 844, 1958, 2179, 2609, 2895
FauNDI CATATG 3 cut(s) 13, 1213, 2074
FbaI TGATCA 1 cut(s) 2749
FblI GTMKAC 3 cut(s) 1375, 1590, 2736
Fnu4HI GCNGC 9 cut(s) 198, 728, 762, 1369, 1448, 1451, 1529, 2289, 2766
FokI GGATG 6 cut(s) 77, 626, 848, 1301, 2711, 2816
FriOI GRGCYC 2 cut(s) 517, 2250
Fsp4HI GCNGC 9 cut(s) 198, 728, 762, 1369, 1448, 1451, 1529, 2289, 2766
FspI TGCGCA 1 cut(s) 1197
GlaI GCGC 7 cut(s) 201, 1197, 1804, 1999, 2025, 2185, 2901
GluI GCNGC 9 cut(s) 198, 728, 762, 1369, 1448, 1451, 1529, 2289, 2766
GsuI CTGGAG 2 cut(s) 80, 324
HaeII RGCGCY 3 cut(s) 203, 1806, 2001
HaeIII GGCC 8 cut(s) 244, 290, 515, 749, 929, 1093, 2797, 3003
HapII CCGG 3 cut(s) 214, 947, 2204
HhaI GCGC 7 cut(s) 202, 1198, 1805, 2000, 2026, 2186, 2902
Hin1II CATG 8 cut(s) 374, 395, 635, 1552, 1966, 2653, 2706, 2953
Hin6I GCGC 7 cut(s) 200, 1196, 1803, 1998, 2024, 2184, 2900
HinP1I GCGC 7 cut(s) 200, 1196, 1803, 1998, 2024, 2184, 2900
HincII GTYRAC 3 cut(s) 2068, 2223, 2737
HindII GTYRAC 3 cut(s) 2068, 2223, 2737
HindIII AAGCTT 2 cut(s) 815, 2867
HpaII CCGG 3 cut(s) 214, 947, 2204
HphI GGTGA 9 cut(s) 601, 950, 1146, 1229, 1691, 1739, 1917, 2201, 2939
Hpy99I CGWCG 1 cut(s) 1834
HpyCH4III ACNGT 8 cut(s) 321, 1105, 1313, 1546, 1830, 1933, 2227, 2266
HpyCH4IV ACGT 3 cut(s) 1915, 1978, 2253
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 277, 674, 1193, 2046, 2574, 2946, 2955
HpySE526I ACGT 3 cut(s) 1915, 1978, 2253
Hsp92II CATG 8 cut(s) 374, 395, 635, 1552, 1966, 2653, 2706, 2953
HspAI GCGC 7 cut(s) 200, 1196, 1803, 1998, 2024, 2184, 2900
Ksp22I TGATCA 1 cut(s) 2749
KspI CCGCGG 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 5 cut(s) 790, 1444, 1536, 2353, 2533
Lsp1109I GCAGC 9 cut(s) 209, 739, 773, 1380, 1434, 1462, 1515, 2275, 2752
LweI GCATC 7 cut(s) 1287, 1309, 1909, 2011, 2385, 2689, 2884
MaeII ACGT 3 cut(s) 1915, 1978, 2253
MaeIII GTNAC 8 cut(s) 41, 940, 1679, 1909, 2030, 2123, 2189, 2708
MflI RGATCY 1 cut(s) 2966
MhlI GDGCHC 3 cut(s) 517, 2250, 2602
MlsI TGGCCA 2 cut(s) 244, 749
MluNI TGGCCA 2 cut(s) 244, 749
MlyI GAGTC 4 cut(s) 26, 397, 744, 959
MmeI TCCRAC 3 cut(s) 486, 1812, 2209
Mox20I TGGCCA 2 cut(s) 244, 749
Mph1103I ATGCAT 1 cut(s) 2704
MscI TGGCCA 2 cut(s) 244, 749
MseI TTAA 8 cut(s) 495, 627, 1022, 1050, 1263, 1476, 1626, 2730
MslI CAYNNNNRTG 3 cut(s) 1547, 1553, 2834
Msp20I TGGCCA 2 cut(s) 244, 749
MspA1I CMGCKG 4 cut(s) 89, 764, 1371, 1453
MspI CCGG 3 cut(s) 214, 947, 2204
MspR9I CCNGG 5 cut(s) 166, 947, 1790, 2129, 2205
Mva1269I GAATGC 2 cut(s) 1427, 1779
MvaI CCWGG 3 cut(s) 166, 1790, 2129
MvnI CGCG 5 cut(s) 89, 1953, 2186, 2546, 2902
MwoI GCNNNNNNNGC 8 cut(s) 34, 277, 674, 1193, 2046, 2574, 2946, 2955
NciI CCSGG 2 cut(s) 947, 2205
NdeI CATATG 3 cut(s) 13, 1213, 2074
NheI GCTAGC 1 cut(s) 757
NlaIII CATG 8 cut(s) 374, 395, 635, 1552, 1966, 2653, 2706, 2953
NlaIV GGNNCC 5 cut(s) 515, 936, 2529, 2968, 2979
NmuCI GTSAC 5 cut(s) 41, 1679, 2030, 2189, 2708
NsbI TGCGCA 1 cut(s) 1197
NsiI ATGCAT 1 cut(s) 2704
NspI RCATGY 2 cut(s) 2706, 2953
PaeR7I CTCGAG 1 cut(s) 6
PagI TCATGA 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 2995
PctI GAATGC 2 cut(s) 1427, 1779
PfeI GAWTC 9 cut(s) 465, 869, 915, 999, 1166, 1640, 2087, 2159, 2314
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 9 cut(s) 199, 729, 763, 1370, 1449, 1452, 1530, 2290, 2767
PleI GAGTC 4 cut(s) 25, 396, 743, 958
PmaCI CACGTG 1 cut(s) 1916
PmlI CACGTG 1 cut(s) 1916
PpsI GAGTC 4 cut(s) 25, 396, 743, 958
Ppu21I YACGTR 1 cut(s) 1916
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 3 cut(s) 164, 1788, 2127
PspCI CACGTG 1 cut(s) 1916
PspEI GGTNACC 2 cut(s) 2123, 2189
PspGI CCWGG 3 cut(s) 164, 1788, 2127
PspN4I GGNNCC 5 cut(s) 515, 936, 2529, 2968, 2979
PspOMI GGGCCC 1 cut(s) 513
PspPI GGNCC 5 cut(s) 289, 513, 514, 1774, 2796
PspXI VCTCGAGB 1 cut(s) 6
PstI CTGCAG 1 cut(s) 1452
PsuI RGATCY 1 cut(s) 2966
PvuII CAGCTG 2 cut(s) 764, 1453
RsaI GTAC 4 cut(s) 191, 769, 1489, 2268
RsaNI GTAC 4 cut(s) 190, 768, 1488, 2267
RseI CAYNNNNRTG 3 cut(s) 1547, 1553, 2834
SacII CCGCGG 1 cut(s) 90
SalI GTCGAC 1 cut(s) 2735
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 8 cut(s) 495, 627, 1022, 1050, 1263, 1476, 1626, 2730
SatI GCNGC 9 cut(s) 198, 728, 762, 1369, 1448, 1451, 1529, 2289, 2766
Sau96I GGNCC 5 cut(s) 289, 513, 514, 1774, 2796
ScaI AGTACT 1 cut(s) 1489
SchI GAGTC 4 cut(s) 26, 397, 744, 959
ScrFI CCNGG 5 cut(s) 166, 947, 1790, 2129, 2205
SduI GDGCHC 3 cut(s) 517, 2250, 2602
SfaNI GCATC 7 cut(s) 1287, 1309, 1909, 2011, 2385, 2689, 2884
SfcI CTRYAG 3 cut(s) 530, 1012, 1448
Sfr274I CTCGAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 1774
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 3 cut(s) 1547, 1553, 2834
SmlI CTYRAG 4 cut(s) 6, 281, 965, 2440
SmoI CTYRAG 4 cut(s) 6, 281, 965, 2440
SpeI ACTAGT 1 cut(s) 1190
SspI AATATT 1 cut(s) 457
StyD4I CCNGG 5 cut(s) 164, 945, 1788, 2127, 2203
StyI CCWWGG 1 cut(s) 2270
TaaI ACNGT 8 cut(s) 321, 1105, 1313, 1546, 1830, 1933, 2227, 2266
TaiI ACGT 3 cut(s) 1918, 1981, 2256
TaqI TCGA 5 cut(s) 7, 658, 1281, 1595, 2736
TatI WGTACW 1 cut(s) 1487
TfiI GAWTC 9 cut(s) 465, 869, 915, 999, 1166, 1640, 2087, 2159, 2314
Tru1I TTAA 8 cut(s) 495, 627, 1022, 1050, 1263, 1476, 1626, 2730
Tru9I TTAA 8 cut(s) 495, 627, 1022, 1050, 1263, 1476, 1626, 2730
TscAI CASTG 8 cut(s) 63, 238, 324, 1549, 1936, 2146, 2434, 2806
TseFI GTSAC 5 cut(s) 41, 1679, 2030, 2189, 2708
TseI GCWGC 9 cut(s) 197, 727, 761, 1368, 1447, 1450, 1528, 2288, 2765
Tsp45I GTSAC 5 cut(s) 41, 1679, 2030, 2189, 2708
TspDTI ATGAA 4 cut(s) 313, 397, 408, 2481
TspGWI ACGGA 4 cut(s) 394, 563, 626, 1159
TspRI CASTG 8 cut(s) 63, 238, 324, 1549, 1936, 2146, 2434, 2806
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 1774
XapI RAATTY 5 cut(s) 128, 425, 1436, 2408, 2540
XbaI TCTAGA 1 cut(s) 1562
XceI RCATGY 2 cut(s) 2706, 2953
XhoI CTCGAG 1 cut(s) 6
XmiI GTMKAC 3 cut(s) 1375, 1590, 2736
ZrmI AGTACT 1 cut(s) 1489
Zsp2I ATGCAT 1 cut(s) 2704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.