Rroxscaffold_6G00398570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000153
Physical Location & Seq
Reverse (-)
20442149 .. 20446842
4694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398570.1

Sequence Viewer

Length: 345 bp
ATGATAAGACTTTATTTCCTATCTAAGAAATTGACTGACATACCAGCTAGAATATCCAGCGTATTTACAATATTGCAGAGATTTAGTAATGCATACCAGCTTGACCAGCTATTTTCTAGGCCTCTGTATCTTCCTAATGCATCATGGCTCCCAAAGTATAGTCTAGTCTATCATCATTTTGTGCTTGAGGATGGTCTTAAAAGGGGTCGGTTTAGAGGCAATTTTGAAACCTCCGAGATGTCGATTTTGAGAAGATTTCCAGGTTGCTTGATTGAGATGGGGGACTATCCGGTAGCCCCCATAAACTTTGAGTATCCTTATGGTTTGGTTATAGGGTGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.4

Weight (kDa)

9.37

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 338
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 47, 100, 109
AluI AGCT 3 cut(s) 47, 100, 109
AoxI GGCC 2 cut(s) 119, 338
BalI TGGCCA 1 cut(s) 340
BccI CCATC 2 cut(s) 185, 271
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 324
BfaI CTAG 3 cut(s) 48, 117, 164
BfuI GTATCC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 289
BseBI CCWGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 196
BshFI GGCC 2 cut(s) 121, 340
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 121, 340
BspANI GGCC 2 cut(s) 121, 340
BspLI GGNNCC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 2 cut(s) 121, 340
BtsCI GGATG 1 cut(s) 196
CviAII CATG 1 cut(s) 144
CviJI RGCY 7 cut(s) 47, 100, 109, 121, 148, 296, 340
CviKI_1 RGCY 7 cut(s) 47, 100, 109, 121, 148, 296, 340
DdeI CTNAG 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 259
EcoT22I ATGCAT 2 cut(s) 94, 142
FaeI CATG 1 cut(s) 147
FaiI YATR 8 cut(s) 41, 94, 145, 159, 302, 321, 332, 343
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 143
FokI GGATG 1 cut(s) 203
FspBI CTAG 3 cut(s) 48, 117, 164
HaeIII GGCC 2 cut(s) 121, 340
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 147
HpaII CCGG 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 76, 92, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 1 cut(s) 147
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 7 cut(s) 57, 70, 110, 119, 246, 273, 303
LweI GCATC 1 cut(s) 149
MaeI CTAG 3 cut(s) 48, 117, 164
MboII GAAGA 2 cut(s) 122, 264
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 2 cut(s) 29, 220
MluNI TGGCCA 1 cut(s) 340
MnlI CCTC 4 cut(s) 132, 181, 209, 241
Mox20I TGGCCA 1 cut(s) 340
Mph1103I ATGCAT 2 cut(s) 94, 142
MscI TGGCCA 1 cut(s) 340
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 149
NsiI ATGCAT 2 cut(s) 94, 142
PceI AGGCCT 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 261
SetI ASST 5 cut(s) 49, 102, 111, 233, 265
SfaNI GCATC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 29, 220
SseBI AGGCCT 1 cut(s) 121
SspI AATATT 1 cut(s) 72
SspMI CTAG 3 cut(s) 48, 117, 164
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 29, 220
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
XspI CTAG 3 cut(s) 48, 117, 164
Zsp2I ATGCAT 2 cut(s) 94, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.