Rroxscaffold_5G00378350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000153
Physical Location & Seq
Reverse (-)
58808950 .. 58822906
13957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378350.1

Sequence Viewer

Length: 489 bp
ATGGATGTAGAGTCTTTTCGTCATGTGGTGCGGAGGTGGAATCCTCATACGCATGATGTAATTAATCAAGATGGTGACGATCAGGTTGTTTCTTCTTCTTTCCTCCTTTGTATGTGTCACATGCGGGGAGATTCTTTGGCTCACAAAGTATTTTCTTCTCGTGTTGAGGTGGAGTTCGAGCGTTTGCAGCAGAGTCCAATGATTAGAAATGATTCAAGCAGCGGTGTGCTTGGAAGCCTTAAGTTACAATTCGTATCTTCCAATGAATCCATAGACTATGAGCTCGTGTTTCGGGGTTGTTTTGTCATGGGCCGTGCCGGCCTTGCCCAGGGCCCGGGTGGCCGGGGTGACATCCCATACGAGTCTGCCATGGTGGGTCGTGAACCCAGCCCATGGTATAATACCGGGGAGTACCGAAGGATCTTAATTGATAGTGCTAAACCTAGTGGAGACTTCCCTAATATGTACAATCCCCATCGCTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.27

Weight (kDa)

6.05

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 393, 481
AciI CCGC 3 cut(s) 31, 124, 222
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 340
AfaI GTAC 2 cut(s) 413, 467
AfiI CCNNNNNNNGG 4 cut(s) 328, 334, 393, 481
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 216
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 4 cut(s) 310, 319, 331, 340
ApaI GGGCCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 187, 219
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 310, 331, 332
AsuC2I CCSGG 4 cut(s) 335, 336, 344, 406
AsuHPI GGTGA 2 cut(s) 86, 359
AvaI CYCGRG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 285, 335
BauI CACGAG 2 cut(s) 159, 284
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 199, 231
BccI CCATC 2 cut(s) 65, 483
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 4 cut(s) 335, 336, 344, 406
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 444
BfrI CTTAAG 1 cut(s) 239
BglI GCCNNNNNGGC 2 cut(s) 318, 339
BisI GCNGC 2 cut(s) 188, 220
BlsI GCNGC 2 cut(s) 189, 221
Bme1390I CCNGG 5 cut(s) 329, 335, 336, 344, 406
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 3 cut(s) 310, 331, 332
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 5 cut(s) 329, 335, 336, 344, 406
BpuMI CCSGG 4 cut(s) 335, 336, 344, 406
BsaJI CCNNGG 7 cut(s) 327, 328, 334, 343, 369, 392, 405
Bsc4I CCNNNNNNNGG 4 cut(s) 328, 334, 393, 481
Bse118I RCCGGY 1 cut(s) 317
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 7 cut(s) 327, 328, 334, 343, 369, 392, 405
BseGI GGATG 2 cut(s) 10, 351
BseLI CCNNNNNNNGG 4 cut(s) 328, 334, 393, 481
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 2 cut(s) 199, 231
BseYI CCCAGC 1 cut(s) 386
BshFI GGCC 4 cut(s) 312, 321, 333, 342
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 318, 335, 343, 405
BslI CCNNNNNNNGG 4 cut(s) 328, 334, 393, 481
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 4 cut(s) 312, 321, 333, 342
BsoBI CYCGRG 1 cut(s) 334
Bsp120I GGGCCC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 285, 335
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 2 cut(s) 79, 420
Bsp19I CCATGG 2 cut(s) 369, 392
BspACI CCGC 3 cut(s) 31, 124, 222
BspANI GGCC 4 cut(s) 312, 321, 333, 342
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 7 cut(s) 327, 328, 334, 343, 369, 392, 405
BssMI GATC 2 cut(s) 79, 420
BssSI CACGAG 2 cut(s) 159, 284
BssT1I CCWWGG 2 cut(s) 369, 392
Bst2BI CACGAG 2 cut(s) 159, 284
Bst2UI CCWGG 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 2 cut(s) 369, 392
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 10, 351
BstKTI GATC 2 cut(s) 82, 423
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 2 cut(s) 79, 420
BstMWI GCNNNNNNNGC 4 cut(s) 187, 318, 323, 339
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 5 cut(s) 327, 333, 334, 342, 404
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 199, 231
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 4 cut(s) 312, 321, 333, 342
BtgI CCRYGG 2 cut(s) 369, 392
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 10, 351
Cac8I GCNNGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 310, 331, 332
Cfr9I CCCGGG 1 cut(s) 334
Csp6I GTAC 2 cut(s) 412, 466
CviAII CATG 6 cut(s) 23, 53, 121, 307, 370, 393
CviJI RGCY 9 cut(s) 140, 237, 283, 312, 321, 333, 342, 390, 485
CviKI_1 RGCY 9 cut(s) 140, 237, 283, 312, 321, 333, 342, 390, 485
CviQI GTAC 2 cut(s) 412, 466
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 81, 422
DpnII GATC 2 cut(s) 79, 420
EaeI YGGCCR 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 369, 392
Eco24I GRGCYC 2 cut(s) 285, 335
Eco53kI GAGCTC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 369, 392
EcoT38I GRGCYC 2 cut(s) 285, 335
ErhI CCWWGG 2 cut(s) 369, 392
FaeI CATG 6 cut(s) 26, 56, 124, 310, 373, 396
FatI CATG 6 cut(s) 22, 52, 120, 306, 369, 392
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 188, 220
FokI GGATG 2 cut(s) 17, 338
FriOI GRGCYC 2 cut(s) 285, 335
Fsp4HI GCNGC 2 cut(s) 188, 220
FspBI CTAG 1 cut(s) 444
GluI GCNGC 2 cut(s) 188, 220
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 4 cut(s) 312, 321, 333, 342
HapII CCGG 4 cut(s) 318, 335, 343, 405
Hin1II CATG 6 cut(s) 26, 56, 124, 310, 373, 396
HinfI GANTC 7 cut(s) 11, 40, 131, 193, 212, 266, 362
HpaII CCGG 4 cut(s) 318, 335, 343, 405
HphI GGTGA 2 cut(s) 86, 359
Hpy166II GTNNAC 1 cut(s) 383
Hpy188III TCNNGA 2 cut(s) 68, 380
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 411
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 318, 323, 339
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 6 cut(s) 26, 56, 124, 310, 373, 396
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 79, 420
LpnPI CCDG 8 cut(s) 68, 314, 331, 341, 348, 356, 400, 418
Lsp1109I GCAGC 2 cut(s) 199, 231
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 4 cut(s) 74, 116, 243, 347
MalI GATC 2 cut(s) 81, 422
MboI GATC 2 cut(s) 79, 420
MboII GAAGA 4 cut(s) 84, 87, 147, 249
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 285, 335
MluCI AATT 3 cut(s) 60, 248, 426
MlyI GAGTC 3 cut(s) 20, 202, 371
MnlI CCTC 4 cut(s) 27, 54, 113, 160
MroNI GCCGGC 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 3 cut(s) 63, 240, 425
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 222
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 4 cut(s) 318, 335, 343, 405
MspR9I CCNGG 5 cut(s) 329, 335, 336, 344, 406
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 4 cut(s) 187, 318, 323, 339
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 4 cut(s) 335, 336, 344, 406
NcoI CCATGG 2 cut(s) 369, 392
NdeII GATC 2 cut(s) 79, 420
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 6 cut(s) 26, 56, 124, 310, 373, 396
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 3 cut(s) 74, 116, 347
NspI RCATGY 1 cut(s) 124
PasI CCCWGGG 1 cut(s) 328
PdiI GCCGGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 4 cut(s) 40, 131, 212, 266
PflMI CCANNNNNTGG 2 cut(s) 393, 481
PkrI GCNGC 2 cut(s) 189, 221
PleI GAGTC 3 cut(s) 19, 201, 370
PpsI GAGTC 3 cut(s) 19, 201, 370
PshBI ATTAAT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 333
PspOMI GGGCCC 1 cut(s) 331
PspPI GGNCC 3 cut(s) 310, 331, 332
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 2 cut(s) 413, 467
RsaNI GTAC 2 cut(s) 412, 466
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 63, 240, 425
SatI GCNGC 2 cut(s) 188, 220
Sau3AI GATC 2 cut(s) 79, 420
Sau96I GGNCC 3 cut(s) 310, 331, 332
SchI GAGTC 3 cut(s) 20, 202, 371
ScrFI CCNGG 5 cut(s) 329, 335, 336, 344, 406
SduI GDGCHC 2 cut(s) 285, 335
SetI ASST 5 cut(s) 38, 87, 171, 285, 445
SfiI GGCCNNNNNGGCC 2 cut(s) 318, 339
SmaI CCCGGG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 60, 248, 426
SsiI CCGC 3 cut(s) 31, 124, 222
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 5 cut(s) 327, 333, 334, 342, 404
StyI CCWWGG 2 cut(s) 369, 392
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 60, 248, 426
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 4 cut(s) 40, 131, 212, 266
Tru1I TTAA 3 cut(s) 63, 240, 425
Tru9I TTAA 3 cut(s) 63, 240, 425
TseFI GTSAC 3 cut(s) 74, 116, 347
TseI GCWGC 2 cut(s) 187, 219
Tsp45I GTSAC 3 cut(s) 74, 116, 347
TspDTI ATGAA 1 cut(s) 279
TspMI CCCGGG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 393, 481
Vha464I CTTAAG 1 cut(s) 239
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 326
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.