RchiOBHm_Chr2g0174771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000153
Physical Location & Seq
Forward (+)
87254127 .. 87255775
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54191

Sequence Viewer

Length: 993 bp
ATGGGTGTCATGTATAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTATAAAGAGTGTGGTTGGCCACCTCAAGGGTGGTAAAAGTGGAGATGATCCTGAAGTAAAGTTGCCAGCTGCCGGAGTGGAGAAAGGTAGCAAGAGCACTACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGAGGGGAAGGCAGAAGGAAGGTTCGTCTCTTCAAACCTAAGGTAGCCAAAGATCGTATACCTCCTCCAGTAGTCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATCGAGTTTGGCTTGTGAAAAGGGGAAGAAGAGGGAAGCTGCCTCTACCCTGAGACCAAGTGGGGTTATTAAGAGGAAGGTTGCAGATGATGCCTCACCTGTCGTCCTTAGGCGGAGTTCTCGTGTGGCCAACATGAATTTTTGTAAACGTAAGCCGTCTTCCAAGGGTGATGTTTATGTTAATCTTAGTGATGGGCCAAGTGTCGACGGGGATAGTAGCCCCTTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGACCTGCGATGGTGGTAGCCAGGTGGAGTCTTTTGAAGATGAGGATGGTCAGGGTAATCCAACTGTAGCTTCGATAGGGGAGGATAGTTGCGGTGATAACCAAGGTGCTCATGTTGGTGTCTTGGTGGGGGATTACGAACATAATGTAGCTGGTGCTCTAATGCAGGAATCTGCTGTAAATGTTGGCCCTTGTGTAGATAATTGTAATATGCAGGACATTGCCATTAGTGACTTGGCGAAAGAATCTACTGCGGACGATAGTCTTTGTGAGGATGACCATAATGAGCGGGGTGGATTATTTTTATTGACAGTTGGAGGGACATCATTTGAGCCCCATCTCCCTGAGACAACATTGGGGGACGAAGGCGTTACTGTTGCAATCTTGGTCAGTATAGGGGTTCCGCTGTGCGTTGCCTCCGCTTGTTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

34.57

Weight (kDa)

5.08

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 566
AccBSI CCGCTC 1 cut(s) 841
AccI GTMKAC 3 cut(s) 42, 241, 495
AciI CCGC 6 cut(s) 403, 645, 806, 841, 956, 972
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 2 cut(s) 70, 417
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 79, 125
AgsI TTSAA 2 cut(s) 217, 590
AjnI CCWGG 1 cut(s) 573
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 4 cut(s) 122, 329, 623, 704
AluI AGCT 4 cut(s) 122, 329, 623, 704
Alw21I GWGCWC 3 cut(s) 152, 664, 712
Alw26I GTCTC 3 cut(s) 215, 337, 893
AlwI GGATC 1 cut(s) 95
AoxI GGCC 4 cut(s) 70, 417, 485, 739
ApeKI GCWGC 2 cut(s) 122, 329
ApoI RAATTY 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 485, 740
AsuHPI GGTGA 3 cut(s) 378, 470, 659
AxyI CCTNAGG 2 cut(s) 222, 398
BalI TGGCCA 2 cut(s) 72, 419
BanII GRGCYC 1 cut(s) 888
BarI GAAGNNNNNNTAC 2 cut(s) 433, 465
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 3 cut(s) 152, 664, 712
BbvI GCAGC 2 cut(s) 109, 316
BccI CCATC 6 cut(s) 176, 298, 476, 557, 593, 897
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 3 cut(s) 215, 337, 893
BfmI CTRYAG 1 cut(s) 618
BfuAI ACCTGC 1 cut(s) 566
BisI GCNGC 2 cut(s) 123, 330
BlsI GCNGC 2 cut(s) 124, 331
Bme1390I CCNGG 1 cut(s) 575
BmgT120I GGNCC 2 cut(s) 485, 740
BmiI GGNNCC 1 cut(s) 954
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 1 cut(s) 370
BoxI GACNNNNGTC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 62, 535
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 177, 453, 655
BsaXI ACNNNNNCTCC 4 cut(s) 397, 427, 518, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 125
Bse1I ACTGG 1 cut(s) 251
Bse21I CCTNAGG 2 cut(s) 222, 398
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 3 cut(s) 177, 453, 655
BseGI GGATG 3 cut(s) 187, 604, 832
BseLI CCNNNNNNNGG 2 cut(s) 79, 125
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 27, 332, 888
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 237, 539
BseXI GCAGC 2 cut(s) 109, 316
BshFI GGCC 4 cut(s) 72, 419, 487, 741
BsiHKAI GWGCWC 3 cut(s) 152, 664, 712
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 886, 926
BslI CCNNNNNNNGG 2 cut(s) 79, 125
BsmAI GTCTC 3 cut(s) 215, 337, 893
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 886, 926
BsnI GGCC 4 cut(s) 72, 419, 487, 741
Bso31I GGTCTC 1 cut(s) 337
Bsp1286I GDGCHC 4 cut(s) 152, 664, 712, 888
Bsp143I GATC 2 cut(s) 100, 235
BspACI CCGC 6 cut(s) 403, 645, 806, 841, 956, 972
BspANI GGCC 4 cut(s) 72, 419, 487, 741
BspCNI CTCAG 3 cut(s) 28, 333, 889
BspLI GGNNCC 1 cut(s) 954
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 841
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 177, 453, 655
BssMI GATC 2 cut(s) 100, 235
BssNAI GTATAC 2 cut(s) 43, 242
BssSI CACGAG 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 453, 655
Bst1107I GTATAC 2 cut(s) 43, 242
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 619, 865, 928
Bst6I CTCTTC 2 cut(s) 218, 314
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 6 cut(s) 36, 222, 341, 398, 476, 897
BstF5I GGATG 3 cut(s) 187, 604, 832
BstKTI GATC 2 cut(s) 103, 238
BstMAI GTCTC 3 cut(s) 215, 337, 893
BstMBI GATC 2 cut(s) 100, 235
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 575
BstPAI GACNNNNGTC 1 cut(s) 813
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 109, 316
BstV2I GAAGAC 1 cut(s) 441
BstZ17I GTATAC 2 cut(s) 43, 242
Bsu36I CCTNAGG 2 cut(s) 222, 398
BsuRI GGCC 4 cut(s) 72, 419, 487, 741
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 3 cut(s) 187, 604, 832
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 485, 740
CviAII CATG 3 cut(s) 10, 424, 665
DdeI CTNAG 6 cut(s) 36, 222, 341, 398, 476, 897
DpnI GATC 2 cut(s) 102, 237
DpnII GATC 2 cut(s) 100, 235
EaeI YGGCCR 2 cut(s) 70, 417
Eam1104I CTCTTC 2 cut(s) 218, 314
EarI CTCTTC 2 cut(s) 218, 314
EciI GGCGGA 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 453, 655
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 2 cut(s) 222, 398
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 453, 655
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 2 cut(s) 453, 655
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 3 cut(s) 13, 427, 668
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 886, 926
FatI CATG 3 cut(s) 9, 423, 664
FauI CCCGC 1 cut(s) 834
FblI GTMKAC 3 cut(s) 42, 241, 495
Fnu4HI GCNGC 2 cut(s) 123, 330
FokI GGATG 3 cut(s) 194, 611, 839
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 2 cut(s) 123, 330
GluI GCNGC 2 cut(s) 123, 330
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 4 cut(s) 72, 419, 487, 741
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 13, 427, 668
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 4 cut(s) 533, 581, 722, 797
HpaII CCGG 1 cut(s) 126
HphI GGTGA 3 cut(s) 378, 470, 659
Hpy166II GTNNAC 4 cut(s) 43, 242, 437, 496
Hpy188I TCNGA 2 cut(s) 178, 538
Hpy188III TCNNGA 2 cut(s) 104, 259
Hpy8I GTNNAC 4 cut(s) 43, 242, 437, 496
Hpy99I CGWCG 1 cut(s) 500
HpyAV CCTTC 6 cut(s) 35, 185, 192, 196, 361, 911
HpyCH4III ACNGT 3 cut(s) 619, 865, 928
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 374, 718, 766, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 6 cut(s) 36, 222, 341, 398, 476, 897
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 3 cut(s) 13, 427, 668
Kzo9I GATC 2 cut(s) 100, 235
Lsp1109I GCAGC 2 cut(s) 109, 316
LweI GCATC 1 cut(s) 370
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 782, 922
MalI GATC 2 cut(s) 102, 237
MbiI CCGCTC 1 cut(s) 841
MboI GATC 2 cut(s) 100, 235
MboII GAAGA 5 cut(s) 205, 328, 331, 441, 602
MhlI GDGCHC 4 cut(s) 152, 664, 712, 888
MlsI TGGCCA 2 cut(s) 72, 419
MluCI AATT 2 cut(s) 427, 754
MluNI TGGCCA 2 cut(s) 72, 419
MlyI GAGTC 2 cut(s) 542, 590
MmeI TCCRAC 2 cut(s) 638, 847
Mox20I TGGCCA 2 cut(s) 72, 419
MscI TGGCCA 2 cut(s) 72, 419
MseI TTAA 4 cut(s) 21, 276, 360, 471
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 2 cut(s) 72, 419
MspA1I CMGCKG 2 cut(s) 122, 958
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 2 cut(s) 100, 235
NlaIII CATG 3 cut(s) 13, 427, 668
NlaIV GGNNCC 1 cut(s) 954
NmuCI GTSAC 1 cut(s) 782
PfeI GAWTC 2 cut(s) 722, 797
PkrI GCNGC 2 cut(s) 124, 331
PleI GAGTC 2 cut(s) 541, 589
PpsI GAGTC 2 cut(s) 541, 589
PshAI GACNNNNGTC 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 954
PspPI GGNCC 2 cut(s) 485, 740
PvuII CAGCTG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 669
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 4 cut(s) 21, 276, 360, 471
SatI GCNGC 2 cut(s) 123, 330
Sau3AI GATC 2 cut(s) 100, 235
Sau96I GGNCC 2 cut(s) 485, 740
SchI GAGTC 2 cut(s) 542, 590
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 4 cut(s) 152, 664, 712, 888
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 77, 514
SmoI CTYRAG 2 cut(s) 77, 514
Sse9I AATT 2 cut(s) 427, 754
SsiI CCGC 6 cut(s) 403, 645, 806, 841, 956, 972
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 2 cut(s) 453, 655
TaaI ACNGT 3 cut(s) 619, 865, 928
TaiI ACGT 1 cut(s) 442
TaqI TCGA 4 cut(s) 47, 293, 495, 626
TasI AATT 2 cut(s) 427, 754
TfiI GAWTC 2 cut(s) 722, 797
Tru1I TTAA 4 cut(s) 21, 276, 360, 471
Tru9I TTAA 4 cut(s) 21, 276, 360, 471
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 2 cut(s) 122, 329
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 1 cut(s) 440
XapI RAATTY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 784
XmiI GTMKAC 3 cut(s) 42, 241, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.