Rmu_sc0007300.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007300.1
OG0000153
Physical Location & Seq
Forward (+)
17348 .. 20913
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007300.1_g000008.1.cds

Sequence Viewer

Length: 693 bp
atgagaattggtgggcttttgtatagagttggagttcttacccgaaaaggatggagtagccatcccagcagcaactcgacggaacgacattcctgttctggagaagacgactccaacgtgcttcttgggctacgggctatccaagacggtgatgtgagcaatgacaatcaggagcagaatcatccttcagatgttggtaagagtaatgacggggttggtcatgacacggcagtacatgcattagttgagtttgataagcacgctccagggattgataaggtgactgtcattcagactcaaagccttggcccaagcttgcctgctaaagggtcaaccagtgagtgggcgacccatatggacaactttatgattcgatttgcttctaaagaggagtctgctttaagcatggctgacgttgcaccagtattgagcggagacaccgctgtttttgcgggtatgaaaattccttcagagttagcgggtcccttggctagatttgctgagagatatggcggtggagatatctttaacttaattgatcgagactatacttcaaggaagaagtgtgagttgattaaggaacttggcatgatgttgtacagcatggaagtttgccagataaaagatggagaagtgttccttatttggagagatgcttggtgtgattccatgggggtgggtcttaatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.01

Weight (kDa)

5.11

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 432
AciI CCGC 5 cut(s) 432, 441, 452, 479, 513
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 171, 453
AfaI GTAC 2 cut(s) 234, 599
AfiI CCNNNNNNNGG 2 cut(s) 326, 342
AgsI TTSAA 1 cut(s) 555
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 429, 537
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 308, 482
AsuHPI GGTGA 2 cut(s) 161, 292
AvaII GGWCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 81
BccI CCATC 3 cut(s) 45, 69, 620
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 429, 537
BfaI CTAG 1 cut(s) 492
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 308, 482
BmiI GGNNCC 2 cut(s) 483, 484
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 2 cut(s) 120, 249
BsaJI CCNNGG 4 cut(s) 266, 304, 486, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 342
Bse1I ACTGG 2 cut(s) 336, 422
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 266, 304, 486, 669
BseGI GGATG 3 cut(s) 56, 61, 181
BseLI CCNNNNNNNGG 2 cut(s) 326, 342
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 336, 422
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 326, 342
BsmAI GTCTC 2 cut(s) 429, 537
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 5 cut(s) 432, 441, 452, 479, 513
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 493
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 483, 484
BsrBI CCGCTC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 2 cut(s) 336, 422
BssECI CCNNGG 4 cut(s) 266, 304, 486, 669
BssMI GATC 1 cut(s) 538
BssT1I CCWWGG 3 cut(s) 304, 486, 669
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 149, 286
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 261, 317, 321
BstDEI CTNAG 1 cut(s) 501
BstDSI CCRYGG 1 cut(s) 669
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 56, 61, 181
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 2 cut(s) 429, 537
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 6 cut(s) 66, 127, 236, 416, 449, 497
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 676
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 3 cut(s) 56, 61, 181
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 261, 317, 321
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 308, 482
Csp6I GTAC 2 cut(s) 233, 598
CviAII CATG 6 cut(s) 221, 236, 406, 589, 604, 670
CviJI RGCY 9 cut(s) 16, 60, 130, 137, 303, 309, 315, 410, 491
CviKI_1 RGCY 9 cut(s) 16, 60, 130, 137, 303, 309, 315, 410, 491
CviQI GTAC 2 cut(s) 233, 598
DdeI CTNAG 1 cut(s) 501
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eco130I CCWWGG 3 cut(s) 304, 486, 669
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 2 cut(s) 171, 453
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 304, 486, 669
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 3 cut(s) 304, 486, 669
FaeI CATG 6 cut(s) 224, 239, 409, 592, 607, 673
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 468
FatI CATG 6 cut(s) 220, 235, 405, 588, 603, 669
FauI CCCGC 2 cut(s) 445, 472
FauNDI CATATG 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 3 cut(s) 48, 63, 168
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 2 cut(s) 120, 249
HaeIII GGCC 1 cut(s) 309
Hin1II CATG 6 cut(s) 224, 239, 409, 592, 607, 673
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 6 cut(s) 110, 178, 295, 370, 392, 665
HphI GGTGA 2 cut(s) 161, 292
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 190, 294, 472
Hpy188III TCNNGA 4 cut(s) 99, 170, 221, 542
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 195, 477
HpyCH4III ACNGT 2 cut(s) 149, 286
HpyCH4IV ACGT 2 cut(s) 117, 414
HpyCH4V TGCA 2 cut(s) 239, 419
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 127, 236, 416, 449, 497
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 2 cut(s) 117, 414
Hsp92II CATG 6 cut(s) 224, 239, 409, 592, 607, 673
KflI GGGWCCC 1 cut(s) 482
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 172, 268
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 117, 414
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 540
MbiI CCGCTC 1 cut(s) 432
MboI GATC 1 cut(s) 538
MboII GAAGA 2 cut(s) 116, 571
MluCI AATT 3 cut(s) 6, 462, 534
MlyI GAGTC 3 cut(s) 104, 289, 401
MmeI TCCRAC 2 cut(s) 10, 138
MnlI CCTC 1 cut(s) 382
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 5 cut(s) 401, 528, 533, 576, 684
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 6 cut(s) 66, 127, 236, 416, 449, 497
NcoI CCATGG 1 cut(s) 669
NdeI CATATG 1 cut(s) 354
NdeII GATC 1 cut(s) 538
NlaIII CATG 6 cut(s) 224, 239, 409, 592, 607, 673
NlaIV GGNNCC 2 cut(s) 483, 484
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 3 cut(s) 178, 370, 665
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 3 cut(s) 104, 289, 400
PpsI GAGTC 3 cut(s) 104, 289, 400
PpuMI RGGWCCY 1 cut(s) 482
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 483, 484
PspPI GGNCC 2 cut(s) 308, 482
PspPPI RGGWCCY 1 cut(s) 482
RsaI GTAC 2 cut(s) 234, 599
RsaNI GTAC 2 cut(s) 233, 598
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 5 cut(s) 401, 528, 533, 576, 684
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 2 cut(s) 308, 482
SchI GAGTC 3 cut(s) 104, 289, 401
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 120, 282, 317, 417
SfaNI GCATC 1 cut(s) 643
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 674
Sse9I AATT 3 cut(s) 6, 462, 534
SsiI CCGC 5 cut(s) 432, 441, 452, 479, 513
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 3 cut(s) 304, 486, 669
TaaI ACNGT 2 cut(s) 149, 286
TaiI ACGT 2 cut(s) 120, 417
TaqI TCGA 3 cut(s) 77, 373, 541
TasI AATT 3 cut(s) 6, 462, 534
TatI WGTACW 2 cut(s) 232, 597
TfiI GAWTC 3 cut(s) 178, 370, 665
Tru1I TTAA 5 cut(s) 401, 528, 533, 576, 684
Tru9I TTAA 5 cut(s) 401, 528, 533, 576, 684
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.