Rmu_sc0007737.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007737.1
OG0000153
Physical Location & Seq
Reverse (-)
34536 .. 36900
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007737.1_g000007.1.cds

Sequence Viewer

Length: 1194 bp
atggctcaagcgtctgagtcttctcagcctattgaacttcgtgatcaccacttctctctggaggatggtctcattcctacttccaccgcggggggttatgaaagtagctcagaggaggcatctcatgaattttctgggcactgtgtttctcccaagttcatatccagcttcgaggaagagtttgaagaggcccttgttggagctggagtgaagatttcattgtttatttctggcttttgtgaggtttacaaacatgacatttgccttcgccatgtggtgcgaagatggaggtttattcagactggtgggactaagttgtgtctgaaagctaatagtgagaacaaaagactactccgcagtaacactgtcttgggtgtcatgtctagacttacccttccctatactgaggtatattcgaatggcatgaagtgtgtggttggtcatctcaagggtggcaaaggtggagtcagggcttccgagggtggaggagaaagtaaaaggaaagtttgccgcttcaaacctaaggtggcaaaggatcgcatccctcctccagtaatcaagagtgcctttggtgtcaaagtgatactgccatcgagtttggctggtgaaaaagggaagaagaggaaagctgcttctaccttgagaccgcgtggggttactaagagaaaggttacaaatgatgcctcacctgctgtcctcaggaggagctcttgcgttgctaacatgagtttttctaaacctaaaccgtcgtctaagggcgctgctcatgttgatcttagtgacgcgccaagtgacgacatcgaaggtagcccccttagtgataatgtcagtacacatgaggagaatgaatctgatacttatgagggagagacatgcgatgacattggagggacatcatttgagccccatctccctgagacagcattgggggacgaaggcgttactactgcaatcttggtcagtataggggttctgctgtgcgttgcctttgcttgttctcttgctcctagctcagataaatcagaaagggtgtcaaaagctgatttggagatgcggtttaggaagtttattgcttactttgacaatgaggatcgcttgagtattactattgatgatattgcccgctcattgagcggtatccgatcttcatttgagggtgggaaagttccttcaatttgtggttccactcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

42.79

Weight (kDa)

7.96

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 697
Acc36I ACCTGC 1 cut(s) 697
AccBSI CCGCTC 2 cut(s) 1125, 1134
AccII CGCG 3 cut(s) 89, 649, 785
AciI CCGC 8 cut(s) 87, 89, 355, 511, 647, 1054, 1123, 1134
AclWI GGATC 2 cut(s) 543, 1098
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 4 cut(s) 35, 185, 517, 1173
AluBI AGCT 8 cut(s) 108, 168, 203, 329, 629, 708, 1011, 1040
AluI AGCT 8 cut(s) 108, 168, 203, 329, 629, 708, 1011, 1040
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 4 cut(s) 74, 637, 863, 911
AlwI GGATC 2 cut(s) 543, 1098
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 629, 761
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
AspLEI GCGC 2 cut(s) 761, 787
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 3 cut(s) 38, 617, 678
AsuII TTCGAA 1 cut(s) 416
AxyI CCTNAGG 2 cut(s) 522, 698
BaeGI GKGCMC 1 cut(s) 141
BanII GRGCYC 2 cut(s) 710, 906
BarI GAAGNNNNNNTAC 2 cut(s) 1129, 1161
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 2 cut(s) 616, 748
BccI CCATC 4 cut(s) 59, 279, 598, 915
BciVI GTATCC 1 cut(s) 1148
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 4 cut(s) 74, 637, 863, 911
BfaI CTAG 2 cut(s) 384, 1008
BfoI RGCGCY 1 cut(s) 762
BfuAI ACCTGC 1 cut(s) 697
BfuI GTATCC 1 cut(s) 1148
BisI GCNGC 3 cut(s) 511, 630, 762
BlsI GCNGC 3 cut(s) 512, 631, 763
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 1183
BmsI GCATC 4 cut(s) 128, 549, 670, 1041
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 3 cut(s) 80, 225, 534
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 3 cut(s) 431, 661, 1117
BsaI GGTCTC 2 cut(s) 74, 637
BsaJI CCNNGG 2 cut(s) 87, 477
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 1040, 1070
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 307, 551
Bse21I CCTNAGG 2 cut(s) 522, 698
BseDI CCNNGG 2 cut(s) 87, 477
BseGI GGATG 2 cut(s) 70, 540
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 7 cut(s) 6, 38, 123, 396, 712, 906, 1026
BseNI ACTGG 2 cut(s) 307, 551
BseRI GAGGAG 5 cut(s) 128, 501, 537, 718, 854
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 616, 748
Bsh1236I CGCG 3 cut(s) 89, 649, 785
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 710
BslFI GGGAC 3 cut(s) 322, 904, 944
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 4 cut(s) 74, 637, 863, 911
BsmFI GGGAC 3 cut(s) 322, 904, 944
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 2 cut(s) 74, 637
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 141, 710, 906
Bsp143I GATC 5 cut(s) 43, 535, 772, 1090, 1142
BspACI CCGC 8 cut(s) 87, 89, 355, 511, 647, 1054, 1123, 1134
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 7 cut(s) 7, 37, 122, 397, 711, 907, 1025
BspFNI CGCG 3 cut(s) 89, 649, 785
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 1183
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 2 cut(s) 543, 1098
BspT104I TTCGAA 1 cut(s) 416
BspTNI GGTCTC 2 cut(s) 74, 637
BsrBI CCGCTC 2 cut(s) 1125, 1134
BsrI ACTGG 2 cut(s) 307, 551
BssECI CCNNGG 2 cut(s) 87, 477
BssMI GATC 5 cut(s) 43, 535, 772, 1090, 1142
Bst4CI ACNGT 3 cut(s) 143, 367, 747
Bst6I CTCTTC 3 cut(s) 171, 180, 614
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 1123
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 70, 540
BstFNI CGCG 3 cut(s) 89, 649, 785
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 2 cut(s) 761, 787
BstKTI GATC 5 cut(s) 46, 538, 775, 1093, 1145
BstMAI GTCTC 4 cut(s) 74, 637, 863, 911
BstMBI GATC 5 cut(s) 43, 535, 772, 1090, 1142
BstMWI GCNNNNNNNGC 2 cut(s) 689, 1131
BstNSI RCATGY 1 cut(s) 876
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 3 cut(s) 89, 649, 785
BstV1I GCAGC 2 cut(s) 616, 748
BstV2I GAAGAC 1 cut(s) 12
Bsu36I CCTNAGG 2 cut(s) 522, 698
BsuI GTATCC 1 cut(s) 1148
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 70, 540
BtsIMutI CAGTG 2 cut(s) 139, 363
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 1 cut(s) 1123
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 761, 787
Cfr13I GGNCC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 1 cut(s) 791
Csp6I GTAC 1 cut(s) 831
CviAII CATG 9 cut(s) 125, 254, 272, 379, 424, 724, 767, 836, 873
CviQI GTAC 1 cut(s) 831
DpnI GATC 5 cut(s) 45, 537, 774, 1092, 1144
DpnII GATC 5 cut(s) 43, 535, 772, 1090, 1142
Eam1104I CTCTTC 3 cut(s) 171, 180, 614
EarI CTCTTC 3 cut(s) 171, 180, 614
Ecl136II GAGCTC 1 cut(s) 708
Eco24I GRGCYC 2 cut(s) 710, 906
Eco31I GGTCTC 2 cut(s) 74, 637
Eco53kI GAGCTC 1 cut(s) 708
Eco81I CCTNAGG 2 cut(s) 522, 698
EcoICRI GAGCTC 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 190
EcoT38I GRGCYC 2 cut(s) 710, 906
FaeI CATG 9 cut(s) 128, 257, 275, 382, 427, 727, 770, 839, 876
FalI AAGNNNNNCTT 4 cut(s) 177, 209, 551, 583
FaqI GGGAC 3 cut(s) 322, 904, 944
FatI CATG 9 cut(s) 124, 253, 271, 378, 423, 723, 766, 835, 872
FauI CCCGC 2 cut(s) 82, 1130
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 511, 630, 762
FokI GGATG 2 cut(s) 77, 527
FriOI GRGCYC 2 cut(s) 710, 906
Fsp4HI GCNGC 3 cut(s) 511, 630, 762
FspBI CTAG 2 cut(s) 384, 1008
GlaI GCGC 2 cut(s) 760, 786
GluI GCNGC 3 cut(s) 511, 630, 762
GsuI CTGGAG 3 cut(s) 80, 225, 534
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 791
HhaI GCGC 2 cut(s) 761, 787
Hin1II CATG 9 cut(s) 128, 257, 275, 382, 427, 727, 770, 839, 876
Hin6I GCGC 2 cut(s) 759, 785
HinP1I GCGC 2 cut(s) 759, 785
HinfI GANTC 3 cut(s) 17, 465, 848
HphI GGTGA 3 cut(s) 38, 617, 678
Hpy166II GTNNAC 2 cut(s) 247, 833
Hpy188I TCNGA 9 cut(s) 16, 112, 300, 324, 478, 853, 1015, 1024, 1142
Hpy188III TCNNGA 6 cut(s) 41, 59, 125, 384, 559, 700
Hpy8I GTNNAC 2 cut(s) 247, 833
Hpy99I CGWCG 1 cut(s) 751
HpyAV CCTTC 5 cut(s) 275, 404, 797, 929, 1179
HpyCH4III ACNGT 3 cut(s) 143, 367, 747
HpyCH4V TGCA 1 cut(s) 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 1131
Hsp92II CATG 9 cut(s) 128, 257, 275, 382, 427, 727, 770, 839, 876
HspAI GCGC 2 cut(s) 759, 785
Ksp22I TGATCA 1 cut(s) 43
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 5 cut(s) 43, 535, 772, 1090, 1142
LmnI GCTCC 3 cut(s) 200, 705, 1009
Lsp1109I GCAGC 2 cut(s) 616, 748
LweI GCATC 4 cut(s) 128, 549, 670, 1041
MaeI CTAG 2 cut(s) 384, 1008
MaeIII GTNAC 6 cut(s) 359, 655, 670, 779, 791, 940
MalI GATC 5 cut(s) 45, 537, 774, 1092, 1144
MbiI CCGCTC 2 cut(s) 1125, 1134
MboI GATC 5 cut(s) 43, 535, 772, 1090, 1142
MboII GAAGA 8 cut(s) 12, 188, 197, 223, 294, 628, 631, 1137
MhlI GDGCHC 3 cut(s) 141, 710, 906
MluCI AATT 2 cut(s) 128, 1173
MlyI GAGTC 2 cut(s) 26, 474
MmeI TCCRAC 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 89
MvnI CGCG 3 cut(s) 89, 649, 785
MwoI GCNNNNNNNGC 2 cut(s) 689, 1131
NdeII GATC 5 cut(s) 43, 535, 772, 1090, 1142
NlaIII CATG 9 cut(s) 128, 257, 275, 382, 427, 727, 770, 839, 876
NlaIV GGNNCC 1 cut(s) 1183
NmuCI GTSAC 2 cut(s) 779, 791
NspI RCATGY 1 cut(s) 876
NspV TTCGAA 1 cut(s) 416
PagI TCATGA 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 848
PkrI GCNGC 3 cut(s) 512, 631, 763
PleI GAGTC 2 cut(s) 25, 473
PpsI GAGTC 2 cut(s) 25, 473
Psp124BI GAGCTC 1 cut(s) 710
PspN4I GGNNCC 1 cut(s) 1183
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
SacI GAGCTC 1 cut(s) 710
SacII CCGCGG 1 cut(s) 90
SatI GCNGC 3 cut(s) 511, 630, 762
Sau3AI GATC 5 cut(s) 43, 535, 772, 1090, 1142
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 26, 474
SduI GDGCHC 3 cut(s) 141, 710, 906
SfaNI GCATC 4 cut(s) 128, 549, 670, 1041
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 416
SgrBI CCGCGG 1 cut(s) 90
SmlI CTYRAG 4 cut(s) 6, 446, 640, 1096
SmoI CTYRAG 4 cut(s) 6, 446, 640, 1096
Sse9I AATT 2 cut(s) 128, 1173
SsiI CCGC 8 cut(s) 87, 89, 355, 511, 647, 1054, 1123, 1134
SspMI CTAG 2 cut(s) 384, 1008
SstI GAGCTC 1 cut(s) 710
TaaI ACNGT 3 cut(s) 143, 367, 747
TaqI TCGA 4 cut(s) 171, 416, 593, 801
TasI AATT 2 cut(s) 128, 1173
TatI WGTACW 1 cut(s) 830
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 1 cut(s) 848
TscAI CASTG 2 cut(s) 146, 370
TseFI GTSAC 2 cut(s) 779, 791
TseI GCWGC 2 cut(s) 629, 761
Tsp45I GTSAC 2 cut(s) 779, 791
TspDTI ATGAA 7 cut(s) 114, 141, 148, 207, 440, 861, 1137
TspRI CASTG 2 cut(s) 146, 370
XapI RAATTY 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 876
XspI CTAG 2 cut(s) 384, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.