RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 400 |
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 527 |
| AciI | CCGC | 5 cut(s) | 122, 333, 400, 839, 855 |
| AclWI | GGATC | 4 cut(s) | 246, 608, 621, 739 |
| AfaI | GTAC | 1 cut(s) | 268 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 527 |
| AgsI | TTSAA | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| AluBI | AGCT | 5 cut(s) | 305, 359, 411, 635, 644 |
| AluI | AGCT | 5 cut(s) | 305, 359, 411, 635, 644 |
| Alw21I | GWGCWC | 1 cut(s) | 413 |
| Alw26I | GTCTC | 1 cut(s) | 776 |
| AlwI | GGATC | 4 cut(s) | 246, 608, 621, 739 |
| AoxI | GGCC | 2 cut(s) | 173, 384 |
| ApeKI | GCWGC | 3 cut(s) | 464, 686, 812 |
| AspLEI | GCGC | 1 cut(s) | 464 |
| AsuHPI | GGTGA | 3 cut(s) | 155, 381, 685 |
| AxyI | CCTNAGG | 1 cut(s) | 225 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 278, 311, 643, 676 |
| BamHI | GGATCC | 1 cut(s) | 613 |
| BanII | GRGCYC | 2 cut(s) | 413, 771 |
| Bbv12I | GWGCWC | 1 cut(s) | 413 |
| BbvI | GCAGC | 3 cut(s) | 451, 673, 799 |
| BccI | CCATC | 4 cut(s) | 67, 71, 302, 780 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BcoDI | GTCTC | 1 cut(s) | 776 |
| BfaI | CTAG | 2 cut(s) | 254, 564 |
| BfmI | CTRYAG | 1 cut(s) | 687 |
| BfoI | RGCGCY | 1 cut(s) | 465 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BglII | AGATCT | 1 cut(s) | 508 |
| BisI | GCNGC | 4 cut(s) | 333, 465, 687, 813 |
| BlsI | GCNGC | 4 cut(s) | 334, 466, 688, 814 |
| Bme1390I | CCNGG | 1 cut(s) | 50 |
| BmiI | GGNNCC | 3 cut(s) | 561, 615, 837 |
| BmrFI | CCNGG | 1 cut(s) | 50 |
| BmsI | GCATC | 5 cut(s) | 51, 73, 105, 109, 252 |
| BoxI | GACNNNNGTC | 1 cut(s) | 696 |
| BpuEI | CTTGAG | 1 cut(s) | 328 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 527 |
| Bse21I | CCTNAGG | 1 cut(s) | 225 |
| Bse3DI | GCAATG | 2 cut(s) | 417, 591 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseGI | GGATG | 4 cut(s) | 58, 243, 715, 802 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 527 |
| BseMI | GCAATG | 2 cut(s) | 417, 591 |
| BseMII | CTCAG | 2 cut(s) | 771, 782 |
| BseRI | GAGGAG | 3 cut(s) | 20, 152, 240 |
| BseXI | GCAGC | 3 cut(s) | 451, 673, 799 |
| BshFI | GGCC | 2 cut(s) | 175, 386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 413 |
| BslFI | GGGAC | 2 cut(s) | 104, 769 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 527 |
| BsmAI | GTCTC | 1 cut(s) | 776 |
| BsmFI | GGGAC | 2 cut(s) | 104, 769 |
| BsnI | GGCC | 2 cut(s) | 175, 386 |
| Bsp1286I | GDGCHC | 2 cut(s) | 413, 771 |
| Bsp143I | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| BspACI | CCGC | 5 cut(s) | 122, 333, 400, 839, 855 |
| BspANI | GGCC | 2 cut(s) | 175, 386 |
| BspCNI | CTCAG | 2 cut(s) | 772, 783 |
| BspLI | GGNNCC | 3 cut(s) | 561, 615, 837 |
| BspMAI | CTGCAG | 1 cut(s) | 691 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspPI | GGATC | 4 cut(s) | 246, 608, 621, 739 |
| BsrDI | GCAATG | 2 cut(s) | 417, 591 |
| BssMI | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| Bst4CI | ACNGT | 5 cut(s) | 294, 379, 450, 572, 748 |
| BstDEI | CTNAG | 7 cut(s) | 225, 350, 363, 456, 479, 780, 791 |
| BstF5I | GGATG | 4 cut(s) | 58, 243, 715, 802 |
| BstH2I | RGCGCY | 1 cut(s) | 465 |
| BstHHI | GCGC | 1 cut(s) | 464 |
| BstKTI | GATC | 5 cut(s) | 241, 478, 511, 616, 734 |
| BstMAI | GTCTC | 1 cut(s) | 776 |
| BstMBI | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 392, 408, 632, 641 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 696 |
| BstSCI | CCNGG | 1 cut(s) | 48 |
| BstSFI | CTRYAG | 1 cut(s) | 687 |
| BstV1I | GCAGC | 3 cut(s) | 451, 673, 799 |
| BstX2I | RGATCY | 2 cut(s) | 508, 613 |
| BstYI | RGATCY | 2 cut(s) | 508, 613 |
| Bsu36I | CCTNAGG | 1 cut(s) | 225 |
| BsuRI | GGCC | 2 cut(s) | 175, 386 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtsCI | GGATG | 4 cut(s) | 58, 243, 715, 802 |
| BtsIMutI | CAGTG | 3 cut(s) | 577, 670, 788 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| CfoI | GCGC | 1 cut(s) | 464 |
| Csp6I | GTAC | 1 cut(s) | 267 |
| CviAII | CATG | 3 cut(s) | 100, 427, 470 |
| CviQI | GTAC | 1 cut(s) | 267 |
| DdeI | CTNAG | 7 cut(s) | 225, 350, 363, 456, 479, 780, 791 |
| DpnI | GATC | 5 cut(s) | 240, 477, 510, 615, 733 |
| DpnII | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| DraI | TTTAAA | 1 cut(s) | 535 |
| Ecl136II | GAGCTC | 1 cut(s) | 411 |
| Eco147I | AGGCCT | 2 cut(s) | 175, 386 |
| Eco24I | GRGCYC | 2 cut(s) | 413, 771 |
| Eco53kI | GAGCTC | 1 cut(s) | 411 |
| Eco81I | CCTNAGG | 1 cut(s) | 225 |
| EcoICRI | GAGCTC | 1 cut(s) | 411 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoT38I | GRGCYC | 2 cut(s) | 413, 771 |
| FaeI | CATG | 3 cut(s) | 103, 430, 473 |
| FaiI | YATR | 8 cut(s) | 21, 101, 428, 471, 595, 638, 717, 830 |
| FaqI | GGGAC | 2 cut(s) | 104, 769 |
| FatI | CATG | 3 cut(s) | 99, 426, 469 |
| Fnu4HI | GCNGC | 4 cut(s) | 333, 465, 687, 813 |
| FokI | GGATG | 4 cut(s) | 65, 230, 722, 809 |
| FriOI | GRGCYC | 2 cut(s) | 413, 771 |
| Fsp4HI | GCNGC | 4 cut(s) | 333, 465, 687, 813 |
| FspBI | CTAG | 2 cut(s) | 254, 564 |
| GlaI | GCGC | 1 cut(s) | 463 |
| GluI | GCNGC | 4 cut(s) | 333, 465, 687, 813 |
| HaeII | RGCGCY | 1 cut(s) | 465 |
| HaeIII | GGCC | 2 cut(s) | 175, 386 |
| HhaI | GCGC | 1 cut(s) | 464 |
| Hin1II | CATG | 3 cut(s) | 103, 430, 473 |
| Hin6I | GCGC | 1 cut(s) | 462 |
| HinP1I | GCGC | 1 cut(s) | 462 |
| HincII | GTYRAC | 1 cut(s) | 744 |
| HindII | GTYRAC | 1 cut(s) | 744 |
| HinfI | GANTC | 2 cut(s) | 668, 680 |
| HphI | GGTGA | 3 cut(s) | 155, 381, 685 |
| Hpy166II | GTNNAC | 2 cut(s) | 553, 744 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 181 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 345 |
| Hpy8I | GTNNAC | 2 cut(s) | 553, 744 |
| Hpy99I | CGWCG | 2 cut(s) | 298, 454 |
| HpyAV | CCTTC | 3 cut(s) | 186, 199, 794 |
| HpyCH4III | ACNGT | 5 cut(s) | 294, 379, 450, 572, 748 |
| HpyCH4IV | ACGT | 1 cut(s) | 654 |
| HpyCH4V | TGCA | 4 cut(s) | 96, 155, 689, 815 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 392, 408, 632, 641 |
| HpyF3I | CTNAG | 7 cut(s) | 225, 350, 363, 456, 479, 780, 791 |
| HpySE526I | ACGT | 1 cut(s) | 654 |
| Hsp92II | CATG | 3 cut(s) | 103, 430, 473 |
| HspAI | GCGC | 1 cut(s) | 462 |
| Kzo9I | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| LmnI | GCTCC | 3 cut(s) | 356, 408, 559 |
| LpnPI | CCDG | 7 cut(s) | 35, 62, 119, 157, 405, 710, 792 |
| Lsp1109I | GCAGC | 3 cut(s) | 451, 673, 799 |
| LweI | GCATC | 5 cut(s) | 51, 73, 105, 109, 252 |
| MaeI | CTAG | 2 cut(s) | 254, 564 |
| MaeII | ACGT | 1 cut(s) | 654 |
| MaeIII | GTNAC | 6 cut(s) | 143, 373, 482, 494, 665, 805 |
| MalI | GATC | 5 cut(s) | 240, 477, 510, 615, 733 |
| MboI | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| MboII | GAAGA | 3 cut(s) | 203, 331, 518 |
| MflI | RGATCY | 2 cut(s) | 508, 613 |
| MhlI | GDGCHC | 2 cut(s) | 413, 771 |
| MlyI | GAGTC | 1 cut(s) | 662 |
| MmeI | TCCRAC | 1 cut(s) | 730 |
| MseI | TTAA | 2 cut(s) | 27, 534 |
| MspA1I | CMGCKG | 1 cut(s) | 841 |
| MspR9I | CCNGG | 1 cut(s) | 50 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 392, 408, 632, 641 |
| NdeII | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| NlaIII | CATG | 3 cut(s) | 103, 430, 473 |
| NlaIV | GGNNCC | 3 cut(s) | 561, 615, 837 |
| NmuCI | GTSAC | 4 cut(s) | 143, 482, 494, 665 |
| PaqCI | CACCTGC | 1 cut(s) | 400 |
| PceI | AGGCCT | 2 cut(s) | 175, 386 |
| PfeI | GAWTC | 1 cut(s) | 680 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 527 |
| PkrI | GCNGC | 4 cut(s) | 334, 466, 688, 814 |
| PleI | GAGTC | 1 cut(s) | 662 |
| PpsI | GAGTC | 1 cut(s) | 662 |
| PshAI | GACNNNNGTC | 1 cut(s) | 696 |
| Psp124BI | GAGCTC | 1 cut(s) | 413 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 3 cut(s) | 561, 615, 837 |
| PstI | CTGCAG | 1 cut(s) | 691 |
| PsuI | RGATCY | 2 cut(s) | 508, 613 |
| RsaI | GTAC | 1 cut(s) | 268 |
| RsaNI | GTAC | 1 cut(s) | 267 |
| SacI | GAGCTC | 1 cut(s) | 413 |
| SaqAI | TTAA | 2 cut(s) | 27, 534 |
| SatI | GCNGC | 4 cut(s) | 333, 465, 687, 813 |
| Sau3AI | GATC | 5 cut(s) | 238, 475, 508, 613, 731 |
| SchI | GAGTC | 1 cut(s) | 662 |
| ScrFI | CCNGG | 1 cut(s) | 50 |
| SduI | GDGCHC | 2 cut(s) | 413, 771 |
| SfaNI | GCATC | 5 cut(s) | 51, 73, 105, 109, 252 |
| SfcI | CTRYAG | 1 cut(s) | 687 |
| SmlI | CTYRAG | 1 cut(s) | 343 |
| SmoI | CTYRAG | 1 cut(s) | 343 |
| SseBI | AGGCCT | 2 cut(s) | 175, 386 |
| SsiI | CCGC | 5 cut(s) | 122, 333, 400, 839, 855 |
| SspMI | CTAG | 2 cut(s) | 254, 564 |
| SstI | GAGCTC | 1 cut(s) | 413 |
| StuI | AGGCCT | 2 cut(s) | 175, 386 |
| StyD4I | CCNGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 5 cut(s) | 294, 379, 450, 572, 748 |
| TaiI | ACGT | 1 cut(s) | 657 |
| TaqI | TCGA | 3 cut(s) | 45, 296, 504 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 680 |
| Tru1I | TTAA | 2 cut(s) | 27, 534 |
| Tru9I | TTAA | 2 cut(s) | 27, 534 |
| TscAI | CASTG | 3 cut(s) | 577, 670, 795 |
| TseFI | GTSAC | 4 cut(s) | 143, 482, 494, 665 |
| TseI | GCWGC | 3 cut(s) | 464, 686, 812 |
| Tsp45I | GTSAC | 4 cut(s) | 143, 482, 494, 665 |
| TspDTI | ATGAA | 2 cut(s) | 514, 813 |
| TspGWI | ACGGA | 1 cut(s) | 421 |
| TspRI | CASTG | 3 cut(s) | 577, 670, 795 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 527 |
| XspI | CTAG | 2 cut(s) | 254, 564 |