Rroxscaffold_2G00127910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000153
Physical Location & Seq
Forward (+)
63469152 .. 63472140
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127910.1

Sequence Viewer

Length: 510 bp
ATGACATTTGCCTTCACCATGTGGTACGAAGATGGAGCCACGAGATTCACACGTTCATCTGTTCTGGGGGAATTTACTCATTCTCCGGAAGATGTCCGCAATATTATAAGAATCCCGATCATTGGAGATGAGGTTGAGTTGTTGCCTCGCGGGGAGCTCATGCGCCGCTATCTCAAGGAGAATCACGAGCATAATGTAGCGGTGCTCGTGCTCGATGAAGGAATCTGCGCAAATGTCGGTCCTTGTGCGGATAATCGTAACAAGCGGTGTGCAAAGTTGGACTTTGGTATCGGTGACTCGGTGAAAGAATCTGCTGCAGACGATAGTCTTTGCGAGGATGACCATAATGAGCGGGGGTTCCGCCGTGCGTTGCCTCCGCTTGTTCTCTTGCTCTTTGACACCGAGGATCGCTCGAGTATCACTATTGATGATATTGCGCTCCCATTGAGCGGTATACGATCTTCATCTAAGGGTGGGAAAGTTCCTTCGATTCGTGGTTCCACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

5.12

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc16I TGCGCA 1 cut(s) 229
AccBSI CCGCTC 2 cut(s) 352, 450
AccI GTMKAC 1 cut(s) 454
AccII CGCG 1 cut(s) 150
AccIII TCCGGA 1 cut(s) 85
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 122, 449
AflIII ACRYGT 1 cut(s) 50
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 3 cut(s) 159, 207, 213
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 412
Aor13HI TCCGGA 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 3 cut(s) 165, 230, 439
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 7, 305, 313
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BanII GRGCYC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BauI CACGAG 3 cut(s) 40, 185, 206
Bbv12I GWGCWC 3 cut(s) 159, 207, 213
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 166, 315
BlsI GCNGC 2 cut(s) 167, 316
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 37, 359, 499
BoxI GACNNNNGTC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpuEI CTTGAG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 449
Bse8I GATNNNNATC 1 cut(s) 463
BseAI TCCGGA 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 463
BseLI CCNNNNNNNGG 2 cut(s) 122, 449
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 150
BsiHKAI GWGCWC 3 cut(s) 159, 207, 213
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 122, 449
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 159, 207, 213
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 3 cut(s) 117, 406, 458
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 37, 359, 499
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 414
BsrBI CCGCTC 2 cut(s) 352, 450
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 3 cut(s) 117, 406, 458
BssNAI GTATAC 1 cut(s) 455
BssSI CACGAG 3 cut(s) 40, 185, 206
Bst1107I GTATAC 1 cut(s) 455
Bst2BI CACGAG 3 cut(s) 40, 185, 206
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 3 cut(s) 165, 230, 439
BstKTI GATC 3 cut(s) 120, 409, 461
BstMBI GATC 3 cut(s) 117, 406, 458
BstPAI GACNNNNGTC 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 301
BstZ17I GTATAC 1 cut(s) 455
BtsCI GGATG 1 cut(s) 343
CfoI GCGC 3 cut(s) 165, 230, 439
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 19, 160
CviJI RGCY 2 cut(s) 38, 157
CviKI_1 RGCY 2 cut(s) 38, 157
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 119, 408, 460
DpnII GATC 3 cut(s) 117, 406, 458
DraIII CACNNNGTG 1 cut(s) 21
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 2 cut(s) 22, 163
FaiI YATR 6 cut(s) 20, 107, 161, 192, 345, 455
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 18, 159
FauI CCCGC 2 cut(s) 143, 345
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 166, 315
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 166, 315
FspI TGCGCA 1 cut(s) 229
GlaI GCGC 3 cut(s) 164, 229, 438
GluI GCNGC 2 cut(s) 166, 315
HapII CCGG 1 cut(s) 86
HhaI GCGC 3 cut(s) 165, 230, 439
Hin1II CATG 2 cut(s) 22, 163
Hin6I GCGC 3 cut(s) 163, 228, 437
HinP1I GCGC 3 cut(s) 163, 228, 437
HinfI GANTC 7 cut(s) 45, 111, 181, 222, 296, 308, 490
HpaII CCGG 1 cut(s) 86
HphI GGTGA 3 cut(s) 7, 305, 313
Hpy166II GTNNAC 1 cut(s) 455
Hpy188III TCNNGA 3 cut(s) 86, 115, 185
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 22, 212, 495
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 272, 317
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 2 cut(s) 22, 163
HspAI GCGC 3 cut(s) 163, 228, 437
Kpn2I TCCGGA 1 cut(s) 85
Kzo9I GATC 3 cut(s) 117, 406, 458
LmnI GCTCC 3 cut(s) 35, 154, 444
LpnPI CCDG 2 cut(s) 50, 99
Lsp1109I GCAGC 1 cut(s) 301
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 257, 293
MalI GATC 3 cut(s) 119, 408, 460
MbiI CCGCTC 2 cut(s) 352, 450
MboI GATC 3 cut(s) 117, 406, 458
MboII GAAGA 3 cut(s) 41, 101, 453
MhlI GDGCHC 3 cut(s) 159, 207, 213
MluCI AATT 1 cut(s) 71
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 124, 156, 328, 384, 397
MroI TCCGGA 1 cut(s) 85
MspI CCGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 150
NdeII GATC 3 cut(s) 117, 406, 458
NlaIII CATG 2 cut(s) 22, 163
NlaIV GGNNCC 3 cut(s) 37, 359, 499
NmuCI GTSAC 1 cut(s) 293
NsbI TGCGCA 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 412
PfeI GAWTC 6 cut(s) 45, 111, 181, 222, 308, 490
PkrI GCNGC 2 cut(s) 167, 316
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PshAI GACNNNNGTC 1 cut(s) 324
PsiI TTATAA 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 37, 359, 499
PspPI GGNCC 1 cut(s) 239
PspXI VCTCGAGB 1 cut(s) 412
PstI CTGCAG 1 cut(s) 319
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 2 cut(s) 166, 315
Sau3AI GATC 3 cut(s) 117, 406, 458
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 3 cut(s) 159, 207, 213
SetI ASST 3 cut(s) 55, 135, 159
SfcI CTRYAG 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 173, 412
SmoI CTYRAG 2 cut(s) 173, 412
Sse9I AATT 1 cut(s) 71
SspI AATATT 1 cut(s) 103
SstI GAGCTC 1 cut(s) 159
TaiI ACGT 1 cut(s) 55
TaqI TCGA 3 cut(s) 213, 413, 488
TaqII GACCGA 1 cut(s) 227
TasI AATT 1 cut(s) 71
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 6 cut(s) 45, 111, 181, 222, 308, 490
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 45, 231, 453
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.