Rh5AG278000

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000153
Physical Location & Seq
Forward (+)
37382179 .. 37400490
18312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG278000.1

Sequence Viewer

Length: 525 bp
ATGGAAATGATCCAGACACCACATCATGGCCATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATAAACATAGAATGCAGTTGCTCAGCAATGTGGCAATTCAAATGGACATAGTTATGAAAATGTTCATGATGAGATGGTTCAGAAGGAAGGCCAAGAATGGTGCATTTAGGCCTGTTGTTTTGGATGACATCGGGAAATTCAATTTCAGACCATATTTCGCTGCTCATGGCTTCCAGACATTTCCCTTCTTTTACCCAGAGGGTAACTCATCACCGTTCCTAGAACCGGTTGAGCTGCTTCTAACCACTAGTGCGCAGTCCTTAATAGCATGTGGTGATTTCTTTGACCCCGTGATGGAGAAGTACTCTCCTTATAGAGTTGAGAGGCAATTTGGCATCGACCAGGATTGTGCCATCGCATCTATCCTATGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACAGATGGTATTTCCTGCAGGGGTATGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

174

Amino Acids

20.29

Weight (kDa)

6.7

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 26
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 26, 307, 376
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 122, 223
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
AlwI GGATC 1 cut(s) 4
AoxI GGCC 3 cut(s) 28, 171, 191
ApeKI GCWGC 2 cut(s) 242, 316
ApoI RAATTY 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 285, 368
BalI TGGCCA 1 cut(s) 30
BbvI GCAGC 2 cut(s) 229, 303
BccI CCATC 5 cut(s) 62, 150, 370, 443, 489
BciT130I CCWGG 1 cut(s) 425
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 2 cut(s) 302, 330
BfmI CTRYAG 1 cut(s) 506
BisI GCNGC 2 cut(s) 243, 317
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 2 cut(s) 244, 318
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 426, 449, 481
BplI GAGNNNNNCTC 4 cut(s) 272, 304, 371, 403
Bpu1102I GCTNAGC 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 307, 376
Bse118I RCCGGY 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 79, 115
BseBI CCWGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 26, 307, 376
BseMI GCAATG 2 cut(s) 79, 115
BseMII CTCAG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 229, 303
BshFI GGCC 3 cut(s) 30, 173, 193
BshTI ACCGGT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 3 cut(s) 26, 307, 376
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 3 cut(s) 30, 173, 193
Bsp143I GATC 1 cut(s) 9
Bsp1720I GCTNAGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 30, 173, 193
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 79, 115
BsrFI RCCGGY 1 cut(s) 307
BssAI RCCGGY 1 cut(s) 307
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 506
BstV1I GCAGC 2 cut(s) 229, 303
BsuRI GGCC 3 cut(s) 30, 173, 193
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 1 cut(s) 211
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 307
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 307
CviAII CATG 6 cut(s) 26, 32, 148, 248, 351, 476
CviJI RGCY 5 cut(s) 30, 173, 193, 252, 316
CviKI_1 RGCY 5 cut(s) 30, 173, 193, 252, 316
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 423
FaeI CATG 6 cut(s) 29, 35, 151, 251, 354, 479
FatI CATG 6 cut(s) 25, 31, 147, 247, 350, 475
Fnu4HI GCNGC 2 cut(s) 243, 317
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 243, 317
FspBI CTAG 2 cut(s) 302, 330
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 243, 317
HaeIII GGCC 3 cut(s) 30, 173, 193
HapII CCGG 1 cut(s) 308
HhaI GCGC 1 cut(s) 337
Hin1II CATG 6 cut(s) 29, 35, 151, 251, 354, 479
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HpaII CCGG 1 cut(s) 308
HphI GGTGA 2 cut(s) 285, 368
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 4 cut(s) 164, 230, 490, 524
Hpy188III TCNNGA 4 cut(s) 13, 148, 214, 256
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 3 cut(s) 159, 163, 277
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 6 cut(s) 35, 77, 97, 185, 472, 508
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 6 cut(s) 29, 35, 151, 251, 354, 479
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 26, 207, 269, 291, 321, 410, 437, 494, 518
Lsp1109I GCAGC 2 cut(s) 229, 303
LweI GCATC 3 cut(s) 426, 449, 481
MaeI CTAG 2 cut(s) 302, 330
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 4 cut(s) 117, 218, 223, 410
MluNI TGGCCA 1 cut(s) 30
MnlI CCTC 2 cut(s) 274, 399
Mox20I TGGCCA 1 cut(s) 30
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 30
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 3 cut(s) 30, 36, 134
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 425
NdeII GATC 1 cut(s) 9
NlaIII CATG 6 cut(s) 29, 35, 151, 251, 354, 479
NsbI TGCGCA 1 cut(s) 336
NspI RCATGY 1 cut(s) 354
PagI TCATGA 1 cut(s) 147
PceI AGGCCT 1 cut(s) 193
PctI GAATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 2 cut(s) 244, 318
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PstI CTGCAG 1 cut(s) 510
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 3 cut(s) 30, 36, 134
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 243, 317
Sau3AI GATC 1 cut(s) 9
SbfI CCTGCAGG 1 cut(s) 510
ScaI AGTACT 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 425
SdaI CCTGCAGG 1 cut(s) 510
SetI ASST 2 cut(s) 49, 318
SfaNI GCATC 3 cut(s) 426, 449, 481
SfcI CTRYAG 1 cut(s) 506
SmiMI CAYNNNNRTG 3 cut(s) 30, 36, 134
SpeI ACTAGT 1 cut(s) 329
Sse8387I CCTGCAGG 1 cut(s) 510
Sse9I AATT 4 cut(s) 117, 218, 223, 410
SseBI AGGCCT 1 cut(s) 193
SspMI CTAG 2 cut(s) 302, 330
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 420
TasI AATT 4 cut(s) 117, 218, 223, 410
TatI WGTACW 1 cut(s) 384
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseI GCWGC 2 cut(s) 242, 316
TspDTI ATGAA 3 cut(s) 54, 136, 152
Van91I CCANNNNNTGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 2 cut(s) 302, 330
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.