FvH4_4g02210

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000153
Physical Location & Seq
Forward (+)
2040123 .. 2043098
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02210.t1

Sequence Viewer

Length: 1896 bp
ATGGCCCCTGAAGTGTCGAGTCCGATAGATCACTATTTTGTGGTTACTAATGGTCTGAAGAGTCCCTTTACAGATGCTAATGAGGCTTCTGGAGACGTTAGCCTTGAGTGCATCTCCAGGTTGTTAATTGAGAGGGGTGACTTCCCAGCAGTCCCCACAGATTTTGATTATCCTTGCGGTGCTGTAACAGGGTGGTCACAGTGGGTTGACTATGAGTTAAGGGATGAAGCTGTAAAAGAAAGACTCTCACAAGCTGAGGTCTTGTATGCCGGAGAGTTCACTCCCACCTTGGAGGATGTCTTCAATATCACAAGGCTTCCAATTACTGGCACCATGGATCCTTTTAGATTTACCCTTGACAAACCATGTGATGAGGAGCTAAACATTCTTATAGCAGGGGCTTCTAGAGTTAAATGGAGCAGCCGCCGTTTTGCAAATTGGGTGAAACACTTTTGGGGAATCATAAAGGATGGTGTGCTAATACCAGGCAAAGGTTTCGACTCAGGTTGCCGTTTGGCAGCCATGCTTGCTCTTTGGTTAACCAAGTATGTTTCCATTGAATTCTCTTATGAGTTTGTCGAGCAGCGTGTGTATCCCATGGCGGTTGCCATAGCGACAGGTCATAGGTTTCCTTTAGCTCCGCTGTTCCTTGGTCATGCATTCATTTGGGACCGCTTCAAGTGTTTGGAAGTAAAACCACTAACCTCGAGCTCATCTTTGGAATTGTATAACAATGGCGTATTAAACAAGAGTGTTATATATCTGCCGCCGAAGCTTCCTTTGTTGTGCCGCTGGTTTAAAAGGAGGCAAGACAAAAAAGTGAAAGAGCAGTGTGCCACATCTTTGGGCCGTGTCGAGCTTTACTTGACTAATTACACAGGTTTTATTCATTCCTTTGGTGAGGACAAAGAAGCCTTGACTTTCAATCCGTTAGTTTATTCTCCTGATAGGGTTATGAGGCAACTCGGTTGTTCTCAAGAGATTCCCGTGCATCCCCTTTTATCCATTAGAGCTGTCGAGACGGCTAGGAAGCTTTCACCTAGAGAATTTGTGGAGGTTGGCAGCCCCCAGATGAAGTTTAAACCTCTTACCAGCAGCAGGCTAGCCAATTGTAATAATGTCTTGACGTATGCTAGGAAACATAACCTTCCTTACACTGAGGTATATGATGATGGAACCGAGAAGATTGTTGGTCACTTTAAAGACTTTGAAGCCGAGGGCACGGATAAAAAAAGAAAAGAGAGGGATAAGACTTCTAGTGATAAGAAAATTGTAAGGGAGCACCACCCCAAGATGTCATCATCCCACTTCAAACCTAAAGTGGCTTTTGAAGAGTTCATGTACAAAACTCCTAAAGGAGTTAAGAGGATAATTCCTCCAAAGTCACTATTTTGGAGGAGAAAGAAGGCGGGCATGGCGGCTGCTTTGACCCCTCGGGCAGGTAGTGCTTCTAATTATGTAGAGAAGAAAAATGCATCGAGCCCAAAAGCAAGAAAAGACATCAAAAGGAAATTTGAATTGGATCCAAATACTCCTTTTCGTCGAAGCAATCGCATAAAGTTCATCAGCTCTTCTTCTCCTCGTGGTCCTCTAGTTCACATCGAGTTGTCTGATATGGAACATGATCATGGGAAAGATTCCGAACAAGGCCGCATTGACTCCTCAAACGAGACCAGTGGAGTTGAAAGCACAAGTGATGGCGATGATAGCATGCATAGTGGCGATGAAGATAACGGCAGCAAAAGCTTGAGTAATGGTGATCAGGTCAACATGAGATCCGATGAGCTTGAGCATGAGAGTGATAAACAGGAGCAGGATCAATCTTTGGAGGTTACAAATACAAGTATTATGGAGACGACAGTGAACGCACTCAATGAAGAGGTCATTGATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

632

Amino Acids

71.43

Weight (kDa)

6.78

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 87 - 219 3.9e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1430
AccB1I GGYRCC 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 326
AclWI GGATC 6 cut(s) 332, 345, 1517, 1530, 1770, 1824
AcsI RAATTY 3 cut(s) 560, 1046, 1511
AcuI CTGAAG 2 cut(s) 30, 77
AfaI GTAC 1 cut(s) 1343
AfiI CCNNNNNNNGG 4 cut(s) 326, 491, 1098, 1439
AgsI TTSAA 9 cut(s) 304, 560, 679, 925, 1211, 1312, 1331, 1517, 1685
AjnI CCWGG 2 cut(s) 116, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 1502, 1534
Alw21I GWGCWC 2 cut(s) 713, 1284
Alw26I GTCTC 4 cut(s) 87, 1013, 1664, 1847
AlwI GGATC 6 cut(s) 332, 345, 1517, 1530, 1770, 1824
Ama87I CYCGRG 2 cut(s) 706, 1434
AoxI GGCC 3 cut(s) 3, 847, 1648
ApeKI GCWGC 7 cut(s) 420, 518, 583, 1062, 1095, 1421, 1737
ApoI RAATTY 3 cut(s) 560, 1046, 1511
AspS9I GGNCC 4 cut(s) 4, 670, 847, 1586
AsuHPI GGTGA 5 cut(s) 149, 454, 911, 1029, 1769
AsuNHI GCTAGC 1 cut(s) 1102
AvaI CYCGRG 2 cut(s) 706, 1434
AvaII GGWCC 2 cut(s) 670, 1586
BaeGI GKGCMC 1 cut(s) 1223
BamHI GGATCC 2 cut(s) 337, 1522
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 713, 1484
BauI CACGAG 1 cut(s) 1581
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 713, 1284
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 7 cut(s) 432, 530, 595, 1074, 1107, 1408, 1749
BccI CCATC 3 cut(s) 464, 1166, 1691
BceAI ACGGC 5 cut(s) 411, 495, 834, 1038, 1750
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 118, 486
BciVI GTATCC 1 cut(s) 603
BclI TGATCA 2 cut(s) 1624, 1759
BcoDI GTCTC 4 cut(s) 87, 1013, 1664, 1847
BfaI CTAG 7 cut(s) 405, 1026, 1041, 1103, 1134, 1257, 1592
BfuAI ACCTGC 1 cut(s) 1430
BfuI GTATCC 1 cut(s) 603
Bme1390I CCNGG 2 cut(s) 118, 486
Bme18I GGWCC 2 cut(s) 670, 1586
BmeT110I CYCGRG 2 cut(s) 706, 1434
BmgT120I GGNCC 4 cut(s) 4, 670, 847, 1586
BmiI GGNNCC 6 cut(s) 6, 331, 339, 671, 1177, 1524
BmrFI CCNGG 2 cut(s) 118, 486
BmsI GCATC 4 cut(s) 64, 120, 1000, 1484
BmtI GCTAGC 1 cut(s) 1106
BpiI GAAGAC 1 cut(s) 292
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 2 cut(s) 100, 111
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 4 cut(s) 125, 960, 1768, 1808
BsaI GGTCTC 1 cut(s) 1664
BsaJI CCNNGG 6 cut(s) 288, 333, 597, 649, 1215, 1433
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 491, 1098, 1439
Bse1I ACTGG 2 cut(s) 331, 1674
BseBI CCWGG 2 cut(s) 118, 486
BseDI CCNNGG 6 cut(s) 288, 333, 597, 649, 1215, 1433
BseGI GGATG 5 cut(s) 229, 301, 475, 991, 1301
BseLI CCNNNNNNNGG 4 cut(s) 326, 491, 1098, 1439
BseMII CTCAG 3 cut(s) 246, 516, 1149
BseNI ACTGG 2 cut(s) 331, 1674
BseRI GAGGAG 4 cut(s) 389, 1411, 1569, 1651
BseSI GKGCMC 1 cut(s) 1223
BseXI GCAGC 7 cut(s) 432, 530, 595, 1074, 1107, 1408, 1749
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 3 cut(s) 5, 849, 1650
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 713, 1284
BsiHKCI CYCGRG 2 cut(s) 706, 1434
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 3 cut(s) 48, 137, 683
BslI CCNNNNNNNGG 4 cut(s) 326, 491, 1098, 1439
BsmAI GTCTC 4 cut(s) 87, 1013, 1664, 1847
BsmBI CGTCTC 3 cut(s) 87, 1013, 1847
BsmFI GGGAC 3 cut(s) 48, 137, 683
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 3 cut(s) 5, 849, 1650
Bso31I GGTCTC 1 cut(s) 1664
BsoBI CYCGRG 2 cut(s) 706, 1434
Bsp1286I GDGCHC 4 cut(s) 713, 1223, 1284, 1484
Bsp1407I TGTACA 1 cut(s) 1341
Bsp143I GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
Bsp19I CCATGG 2 cut(s) 333, 597
BspANI GGCC 3 cut(s) 5, 849, 1650
BspCNI CTCAG 3 cut(s) 247, 515, 1150
BspLI GGNNCC 6 cut(s) 6, 331, 339, 671, 1177, 1524
BspMI ACCTGC 1 cut(s) 1430
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 6 cut(s) 332, 345, 1517, 1530, 1770, 1824
BspQI GCTCTTC 1 cut(s) 1576
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 1664
BsrGI TGTACA 1 cut(s) 1341
BsrI ACTGG 2 cut(s) 331, 1674
BssECI CCNNGG 6 cut(s) 288, 333, 597, 649, 1215, 1433
BssMI GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
BssSI CACGAG 1 cut(s) 1581
BssT1I CCWWGG 4 cut(s) 288, 333, 597, 649
Bst2BI CACGAG 1 cut(s) 1581
Bst2UI CCWGG 2 cut(s) 118, 486
Bst4CI ACNGT 2 cut(s) 201, 1861
Bst6I CTCTTC 4 cut(s) 53, 1326, 1576, 1872
BstAPI GCANNNNNTGC 1 cut(s) 1445
BstAUI TGTACA 1 cut(s) 1341
BstC8I GCNNGC 5 cut(s) 528, 1100, 1104, 1411, 1712
BstDEI CTNAG 3 cut(s) 255, 502, 1158
BstDSI CCRYGG 2 cut(s) 333, 597
BstENI CCTNNNNNAGG 1 cut(s) 1437
BstF5I GGATG 5 cut(s) 229, 301, 475, 991, 1301
BstKTI GATC 7 cut(s) 31, 340, 1525, 1627, 1762, 1778, 1819
BstMAI GTCTC 4 cut(s) 87, 1013, 1664, 1847
BstMBI GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
BstMWI GCNNNNNNNGC 8 cut(s) 83, 108, 527, 772, 1415, 1445, 1707, 1743
BstNI CCWGG 2 cut(s) 118, 486
BstNSI RCATGY 1 cut(s) 1714
BstSCI CCNGG 2 cut(s) 116, 484
BstSLI GKGCMC 1 cut(s) 1223
BstV1I GCAGC 7 cut(s) 432, 530, 595, 1074, 1107, 1408, 1749
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 3 cut(s) 337, 1522, 1775
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 3 cut(s) 337, 1522, 1775
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 3 cut(s) 5, 849, 1650
BtgI CCRYGG 2 cut(s) 333, 597
BtgZI GCGATG 2 cut(s) 1716, 1737
BtsCI GGATG 5 cut(s) 229, 301, 475, 991, 1301
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 5 cut(s) 206, 836, 1155, 1681, 1866
BveI ACCTGC 1 cut(s) 1430
Cac8I GCNNGC 5 cut(s) 528, 1100, 1104, 1411, 1712
Cfr13I GGNCC 4 cut(s) 4, 670, 847, 1586
Csp6I GTAC 1 cut(s) 1342
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviQI GTAC 1 cut(s) 1342
DdeI CTNAG 3 cut(s) 255, 502, 1158
DpnI GATC 7 cut(s) 30, 339, 1524, 1626, 1761, 1777, 1818
DpnII GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
DraI TTTAAA 3 cut(s) 799, 1081, 1201
Eam1104I CTCTTC 4 cut(s) 53, 1326, 1576, 1872
EarI CTCTTC 4 cut(s) 53, 1326, 1576, 1872
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 4 cut(s) 288, 333, 597, 649
Eco24I GRGCYC 2 cut(s) 713, 1484
Eco31I GGTCTC 1 cut(s) 1664
Eco47I GGWCC 2 cut(s) 670, 1586
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 2 cut(s) 30, 77
Eco88I CYCGRG 2 cut(s) 706, 1434
EcoICRI GAGCTC 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 1437
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 116, 484
EcoT14I CCWWGG 4 cut(s) 288, 333, 597, 649
EcoT22I ATGCAT 3 cut(s) 661, 1477, 1716
EcoT38I GRGCYC 2 cut(s) 713, 1484
ErhI CCWWGG 4 cut(s) 288, 333, 597, 649
Esp3I CGTCTC 3 cut(s) 87, 1013, 1847
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 3 cut(s) 48, 137, 683
FauI CCCGC 1 cut(s) 1402
FbaI TGATCA 2 cut(s) 1624, 1759
FokI GGATG 5 cut(s) 236, 308, 482, 978, 1288
FriOI GRGCYC 2 cut(s) 713, 1484
FspBI CTAG 7 cut(s) 405, 1026, 1041, 1103, 1134, 1257, 1592
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 2 cut(s) 100, 111
HaeIII GGCC 3 cut(s) 5, 849, 1650
HapII CCGG 1 cut(s) 270
HincII GTYRAC 3 cut(s) 208, 540, 1768
HindII GTYRAC 3 cut(s) 208, 540, 1768
HindIII AAGCTT 3 cut(s) 773, 1031, 1744
HinfI GANTC 8 cut(s) 19, 61, 243, 459, 500, 982, 1637, 1658
HpaI GTTAAC 1 cut(s) 540
HpaII CCGG 1 cut(s) 270
HphI GGTGA 5 cut(s) 149, 454, 911, 1029, 1769
Hpy166II GTNNAC 6 cut(s) 208, 279, 540, 1597, 1768, 1864
Hpy188I TCNGA 5 cut(s) 24, 57, 1612, 1642, 1780
Hpy188III TCNNGA 6 cut(s) 90, 405, 944, 977, 1018, 1123
Hpy8I GTNNAC 6 cut(s) 208, 279, 540, 1597, 1768, 1864
Hpy99I CGWCG 1 cut(s) 1545
HpyAV CCTTC 2 cut(s) 1157, 1399
HpyCH4III ACNGT 2 cut(s) 201, 1861
HpyCH4IV ACGT 2 cut(s) 96, 1127
HpyCH4V TGCA 6 cut(s) 111, 434, 659, 991, 1475, 1714
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 108, 527, 772, 1415, 1445, 1707, 1743
HpyF3I CTNAG 3 cut(s) 255, 502, 1158
HpySE526I ACGT 2 cut(s) 96, 1127
Ksp22I TGATCA 2 cut(s) 1624, 1759
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
LguI GCTCTTC 1 cut(s) 1576
LmnI GCTCC 5 cut(s) 376, 417, 643, 1279, 1810
Lsp1109I GCAGC 7 cut(s) 432, 530, 595, 1074, 1107, 1408, 1749
LweI GCATC 4 cut(s) 64, 120, 1000, 1484
MaeI CTAG 7 cut(s) 405, 1026, 1041, 1103, 1134, 1257, 1592
MaeII ACGT 2 cut(s) 96, 1127
MaeIII GTNAC 7 cut(s) 43, 137, 184, 195, 1193, 1383, 1831
MalI GATC 7 cut(s) 30, 339, 1524, 1626, 1761, 1777, 1818
MboI GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
MboII GAAGA 9 cut(s) 70, 292, 1195, 1343, 1477, 1563, 1566, 1739, 1889
MfeI CAATTG 1 cut(s) 1108
MflI RGATCY 3 cut(s) 337, 1522, 1775
MhlI GDGCHC 4 cut(s) 713, 1223, 1284, 1484
MlyI GAGTC 5 cut(s) 28, 70, 237, 494, 1652
Mph1103I ATGCAT 3 cut(s) 661, 1477, 1716
MseI TTAA 9 cut(s) 125, 218, 411, 539, 743, 798, 1080, 1200, 1362
MslI CAYNNNNRTG 2 cut(s) 1626, 1797
MspA1I CMGCKG 2 cut(s) 643, 792
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 118, 486
MssI GTTTAAAC 1 cut(s) 1081
MunI CAATTG 1 cut(s) 1108
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 2 cut(s) 118, 486
MwoI GCNNNNNNNGC 8 cut(s) 83, 108, 527, 772, 1415, 1445, 1707, 1743
NcoI CCATGG 2 cut(s) 333, 597
NdeII GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
NheI GCTAGC 1 cut(s) 1102
NlaIV GGNNCC 6 cut(s) 6, 331, 339, 671, 1177, 1524
NmeAIII GCCGAG 1 cut(s) 1240
NmuCI GTSAC 4 cut(s) 137, 195, 1193, 1383
NsiI ATGCAT 3 cut(s) 661, 1477, 1716
NspI RCATGY 1 cut(s) 1714
PaeI GCATGC 1 cut(s) 1714
PaeR7I CTCGAG 1 cut(s) 706
PciSI GCTCTTC 1 cut(s) 1576
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 3 cut(s) 459, 982, 1637
PflMI CCANNNNNTGG 1 cut(s) 326
PleI GAGTC 5 cut(s) 27, 69, 237, 494, 1652
PmeI GTTTAAAC 1 cut(s) 1081
PpsI GAGTC 5 cut(s) 27, 69, 237, 494, 1652
Psp124BI GAGCTC 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 116, 484
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 116, 484
PspN4I GGNNCC 6 cut(s) 6, 331, 339, 671, 1177, 1524
PspPI GGNCC 4 cut(s) 4, 670, 847, 1586
PspXI VCTCGAGB 1 cut(s) 706
PsuI RGATCY 3 cut(s) 337, 1522, 1775
RsaI GTAC 1 cut(s) 1343
RsaNI GTAC 1 cut(s) 1342
RseI CAYNNNNRTG 2 cut(s) 1626, 1797
SacI GAGCTC 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 1576
SaqAI TTAA 9 cut(s) 125, 218, 411, 539, 743, 798, 1080, 1200, 1362
Sau3AI GATC 7 cut(s) 28, 337, 1522, 1624, 1759, 1775, 1816
Sau96I GGNCC 4 cut(s) 4, 670, 847, 1586
SchI GAGTC 5 cut(s) 28, 70, 237, 494, 1652
ScrFI CCNGG 2 cut(s) 118, 486
SduI GDGCHC 4 cut(s) 713, 1223, 1284, 1484
SfaNI GCATC 4 cut(s) 64, 120, 1000, 1484
Sfr274I CTCGAG 1 cut(s) 706
SinI GGWCC 2 cut(s) 670, 1586
SlaI CTCGAG 1 cut(s) 706
SmiMI CAYNNNNRTG 2 cut(s) 1626, 1797
SmlI CTYRAG 5 cut(s) 104, 706, 975, 1747, 1787
SmoI CTYRAG 5 cut(s) 104, 706, 975, 1747, 1787
SphI GCATGC 1 cut(s) 1714
SspMI CTAG 7 cut(s) 405, 1026, 1041, 1103, 1134, 1257, 1592
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 116, 484
StyI CCWWGG 4 cut(s) 288, 333, 597, 649
TaaI ACNGT 2 cut(s) 201, 1861
TaiI ACGT 2 cut(s) 99, 1130
TaqI TCGA 9 cut(s) 17, 498, 579, 707, 855, 1017, 1478, 1543, 1602
TatI WGTACW 1 cut(s) 1341
TauI GCSGC 5 cut(s) 426, 769, 792, 1421, 1653
TfiI GAWTC 3 cut(s) 459, 982, 1637
Tru1I TTAA 9 cut(s) 125, 218, 411, 539, 743, 798, 1080, 1200, 1362
Tru9I TTAA 9 cut(s) 125, 218, 411, 539, 743, 798, 1080, 1200, 1362
TscAI CASTG 5 cut(s) 206, 836, 1162, 1681, 1866
TseFI GTSAC 4 cut(s) 137, 195, 1193, 1383
TseI GCWGC 7 cut(s) 420, 518, 583, 1062, 1095, 1421, 1737
Tsp45I GTSAC 4 cut(s) 137, 195, 1193, 1383
TspDTI ATGAA 8 cut(s) 240, 652, 878, 1088, 1327, 1552, 1740, 1890
TspGWI ACGGA 2 cut(s) 918, 1238
TspRI CASTG 5 cut(s) 206, 836, 1162, 1681, 1866
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 670, 1586
XagI CCTNNNNNAGG 1 cut(s) 1437
XapI RAATTY 3 cut(s) 560, 1046, 1511
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 1 cut(s) 1714
XhoI CTCGAG 1 cut(s) 706
XspI CTAG 7 cut(s) 405, 1026, 1041, 1103, 1134, 1257, 1592
Zsp2I ATGCAT 3 cut(s) 661, 1477, 1716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.