CHD3-type chromatin-remodeling factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1614 |
| AarI | CACCTGC | 1 cut(s) | 1576 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| AatII | GACGTC | 2 cut(s) | 2010, 2439 |
| Acc16I | TGCGCA | 1 cut(s) | 828 |
| Acc36I | ACCTGC | 4 cut(s) | 419, 471, 1576, 1745 |
| AccB1I | GGYRCC | 1 cut(s) | 103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2201 |
| AccBSI | CCGCTC | 2 cut(s) | 571, 1927 |
| AccI | GTMKAC | 2 cut(s) | 1221, 2460 |
| AccII | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| AclWI | GGATC | 6 cut(s) | 1038, 1051, 1274, 1942, 2166, 2536 |
| AcoI | YGGCCR | 1 cut(s) | 537 |
| AcsI | RAATTY | 4 cut(s) | 215, 710, 752, 2264 |
| AcuI | CTGAAG | 2 cut(s) | 1305, 2403 |
| AcyI | GRCGYC | 2 cut(s) | 2007, 2436 |
| AdeI | CACNNNGTG | 1 cut(s) | 2048 |
| AfaI | GTAC | 4 cut(s) | 559, 2279, 2323, 2369 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 90, 266, 799, 868, 1361, 2201, 2583 |
| AflII | CTTAAG | 2 cut(s) | 2164, 2453 |
| AgeI | ACCGGT | 1 cut(s) | 1112 |
| AhlI | ACTAGT | 2 cut(s) | 821, 1142 |
| AjnI | CCWGG | 2 cut(s) | 915, 1752 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2324, 2356 |
| Alw26I | GTCTC | 8 cut(s) | 74, 376, 402, 1025, 1150, 1516, 1979, 2372 |
| AlwI | GGATC | 6 cut(s) | 1038, 1051, 1274, 1942, 2166, 2536 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 328 |
| Ama87I | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| AoxI | GGCC | 7 cut(s) | 93, 146, 192, 537, 663, 683, 1664 |
| ApeKI | GCWGC | 9 cut(s) | 319, 444, 517, 551, 808, 1081, 1301, 1508, 2489 |
| ApoI | RAATTY | 4 cut(s) | 215, 710, 752, 2264 |
| AsiGI | ACCGGT | 1 cut(s) | 1112 |
| AspLEI | GCGC | 5 cut(s) | 307, 829, 1673, 2193, 2626 |
| AspS9I | GGNCC | 5 cut(s) | 93, 132, 193, 1664, 1826 |
| AsuC2I | CCSGG | 1 cut(s) | 449 |
| AsuHPI | GGTGA | 7 cut(s) | 391, 777, 860, 1244, 1557, 1649, 1983 |
| AsuII | TTCGAA | 1 cut(s) | 435 |
| AsuNHI | GCTAGC | 1 cut(s) | 547 |
| AvaI | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| AvaII | GGWCC | 2 cut(s) | 132, 1826 |
| AxyI | CCTNAGG | 2 cut(s) | 1401, 1577 |
| BalI | TGGCCA | 1 cut(s) | 539 |
| BamHI | GGATCC | 1 cut(s) | 1043 |
| BanI | GGYRCC | 1 cut(s) | 103 |
| BanII | GRGCYC | 3 cut(s) | 398, 1354, 1974 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2197, 2229 |
| BauI | CACGAG | 1 cut(s) | 863 |
| BbsI | GAAGAC | 3 cut(s) | 12, 520, 2637 |
| BbvI | GCAGC | 9 cut(s) | 306, 431, 529, 563, 795, 1093, 1288, 1495, 2476 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1994, 2028 |
| BciT130I | CCWGG | 2 cut(s) | 917, 1754 |
| BciVI | GTATCC | 3 cut(s) | 132, 1430, 2584 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcnI | CCSGG | 1 cut(s) | 449 |
| BcoDI | GTCTC | 8 cut(s) | 74, 376, 402, 1025, 1150, 1516, 1979, 2372 |
| BcuI | ACTAGT | 2 cut(s) | 821, 1142 |
| BfaI | CTAG | 7 cut(s) | 548, 794, 822, 1122, 1143, 1194, 2298 |
| BfmI | CTRYAG | 3 cut(s) | 320, 997, 1165 |
| BfoI | RGCGCY | 1 cut(s) | 1674 |
| BfrI | CTTAAG | 2 cut(s) | 2164, 2453 |
| BfuAI | ACCTGC | 4 cut(s) | 419, 471, 1576, 1745 |
| BfuI | GTATCC | 3 cut(s) | 132, 1430, 2584 |
| BglII | AGATCT | 1 cut(s) | 2210 |
| Bme1390I | CCNGG | 3 cut(s) | 449, 917, 1754 |
| Bme18I | GGWCC | 2 cut(s) | 132, 1826 |
| BmeT110I | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| BmgT120I | GGNCC | 5 cut(s) | 93, 132, 193, 1664, 1826 |
| BmiI | GGNNCC | 5 cut(s) | 105, 134, 1045, 1353, 2253 |
| BmrFI | CCNGG | 3 cut(s) | 449, 917, 1754 |
| BmrI | ACTGGG | 1 cut(s) | 385 |
| BmsI | GCATC | 4 cut(s) | 940, 1549, 2413, 2608 |
| BmtI | GCTAGC | 1 cut(s) | 551 |
| BmuI | ACTGGG | 1 cut(s) | 385 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1899 |
| BpiI | GAAGAC | 3 cut(s) | 12, 520, 2637 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1208, 1240 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2493 |
| Bpu14I | TTCGAA | 1 cut(s) | 435 |
| BpuEI | CTTGAG | 3 cut(s) | 1084, 1241, 1714 |
| BpuMI | CCSGG | 1 cut(s) | 449 |
| BsaBI | GATNNNNATC | 1 cut(s) | 276 |
| BsaHI | GRCGYC | 2 cut(s) | 2007, 2436 |
| BsaI | GGTCTC | 2 cut(s) | 74, 1516 |
| BsaJI | CCNNGG | 4 cut(s) | 1356, 1632, 1994, 2238 |
| BsaWI | WCCGGW | 2 cut(s) | 117, 1112 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2108, 2138 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 90, 266, 799, 868, 1361, 2201, 2583 |
| Bse118I | RCCGGY | 3 cut(s) | 554, 799, 1112 |
| Bse1I | ACTGG | 3 cut(s) | 63, 380, 476 |
| Bse21I | CCTNAGG | 2 cut(s) | 1401, 1577 |
| Bse3DI | GCAATG | 1 cut(s) | 653 |
| Bse8I | GATNNNNATC | 1 cut(s) | 276 |
| BseBI | CCWGG | 2 cut(s) | 917, 1754 |
| BseDI | CCNNGG | 4 cut(s) | 1356, 1632, 1994, 2238 |
| BseGI | GGATG | 8 cut(s) | 277, 631, 925, 1366, 1687, 1783, 1918, 2428 |
| BseJI | GATNNNNATC | 1 cut(s) | 276 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 90, 266, 799, 868, 1361, 2201, 2583 |
| BseMI | GCAATG | 1 cut(s) | 653 |
| BseMII | CTCAG | 8 cut(s) | 6, 38, 1206, 1511, 1974, 2094, 2145, 2530 |
| BseNI | ACTGG | 3 cut(s) | 63, 380, 476 |
| BseRI | GAGGAG | 5 cut(s) | 567, 873, 1416, 1718, 2363 |
| BseXI | GCAGC | 9 cut(s) | 306, 431, 529, 563, 795, 1093, 1288, 1495, 2476 |
| BseYI | CCCAGC | 1 cut(s) | 206 |
| BsgI | GTGCAG | 3 cut(s) | 447, 536, 1854 |
| Bsh1236I | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| BshFI | GGCC | 7 cut(s) | 95, 148, 194, 539, 665, 685, 1666 |
| BshNI | GGYRCC | 1 cut(s) | 103 |
| BshTI | ACCGGT | 1 cut(s) | 1112 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| BsiSI | CCGG | 5 cut(s) | 118, 448, 555, 800, 1113 |
| BslFI | GGGAC | 4 cut(s) | 1132, 1972, 2012, 2219 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 90, 266, 799, 868, 1361, 2201, 2583 |
| BsmAI | GTCTC | 8 cut(s) | 74, 376, 402, 1025, 1150, 1516, 1979, 2372 |
| BsmFI | GGGAC | 4 cut(s) | 1132, 1972, 2012, 2219 |
| BsnI | GGCC | 7 cut(s) | 95, 148, 194, 539, 665, 685, 1666 |
| Bso31I | GGTCTC | 2 cut(s) | 74, 1516 |
| BsoBI | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| Bsp119I | TTCGAA | 1 cut(s) | 435 |
| Bsp1286I | GDGCHC | 3 cut(s) | 398, 1354, 1974 |
| Bsp1407I | TGTACA | 1 cut(s) | 2367 |
| BspANI | GGCC | 7 cut(s) | 95, 148, 194, 539, 665, 685, 1666 |
| BspCNI | CTCAG | 8 cut(s) | 7, 37, 1207, 1512, 1975, 2093, 2146, 2529 |
| BspFNI | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| BspHI | TCATGA | 1 cut(s) | 40 |
| BspLI | GGNNCC | 5 cut(s) | 105, 134, 1045, 1353, 2253 |
| BspMAI | CTGCAG | 2 cut(s) | 324, 1001 |
| BspMI | ACCTGC | 4 cut(s) | 419, 471, 1576, 1745 |
| BspOI | GCTAGC | 1 cut(s) | 551 |
| BspPI | GGATC | 6 cut(s) | 1038, 1051, 1274, 1942, 2166, 2536 |
| BspQI | GCTCTTC | 1 cut(s) | 174 |
| BspT104I | TTCGAA | 1 cut(s) | 435 |
| BspT107I | GGYRCC | 1 cut(s) | 103 |
| BspTI | CTTAAG | 2 cut(s) | 2164, 2453 |
| BspTNI | GGTCTC | 2 cut(s) | 74, 1516 |
| BsrBI | CCGCTC | 2 cut(s) | 571, 1927 |
| BsrDI | GCAATG | 1 cut(s) | 653 |
| BsrFI | RCCGGY | 3 cut(s) | 554, 799, 1112 |
| BsrGI | TGTACA | 1 cut(s) | 2367 |
| BsrI | ACTGG | 3 cut(s) | 63, 380, 476 |
| BssAI | RCCGGY | 3 cut(s) | 554, 799, 1112 |
| BssECI | CCNNGG | 4 cut(s) | 1356, 1632, 1994, 2238 |
| BssNAI | GTATAC | 1 cut(s) | 1222 |
| BssNI | GRCGYC | 2 cut(s) | 2007, 2436 |
| BssSI | CACGAG | 1 cut(s) | 863 |
| BssT1I | CCWWGG | 1 cut(s) | 1632 |
| Bst1107I | GTATAC | 1 cut(s) | 1222 |
| Bst2BI | CACGAG | 1 cut(s) | 863 |
| Bst2UI | CCWGG | 2 cut(s) | 917, 1754 |
| Bst4CI | ACNGT | 5 cut(s) | 944, 1169, 1177, 1626, 2282 |
| Bst6I | CTCTTC | 5 cut(s) | 174, 183, 587, 1493, 2062 |
| BstACI | GRCGYC | 2 cut(s) | 2007, 2436 |
| BstAFI | CTTAAG | 2 cut(s) | 2164, 2453 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1559 |
| BstAUI | TGTACA | 1 cut(s) | 2367 |
| BstBI | TTCGAA | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 3 cut(s) | 549, 1299, 2487 |
| BstEII | GGTNACC | 1 cut(s) | 1250 |
| BstF5I | GGATG | 8 cut(s) | 277, 631, 925, 1366, 1687, 1783, 1918, 2428 |
| BstFNI | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| BstH2I | RGCGCY | 1 cut(s) | 1674 |
| BstHHI | GCGC | 5 cut(s) | 307, 829, 1673, 2193, 2626 |
| BstMAI | GTCTC | 8 cut(s) | 74, 376, 402, 1025, 1150, 1516, 1979, 2372 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 464, 805, 1559, 1568 |
| BstNI | CCWGG | 2 cut(s) | 917, 1754 |
| BstNSI | RCATGY | 2 cut(s) | 846, 2430 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1899 |
| BstPI | GGTNACC | 1 cut(s) | 1250 |
| BstSCI | CCNGG | 3 cut(s) | 447, 915, 1752 |
| BstSFI | CTRYAG | 3 cut(s) | 320, 997, 1165 |
| BstUI | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| BstV1I | GCAGC | 9 cut(s) | 306, 431, 529, 563, 795, 1093, 1288, 1495, 2476 |
| BstV2I | GAAGAC | 3 cut(s) | 12, 520, 2637 |
| BstX2I | RGATCY | 2 cut(s) | 1043, 2210 |
| BstYI | RGATCY | 2 cut(s) | 1043, 2210 |
| BstZ17I | GTATAC | 1 cut(s) | 1222 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1401, 1577 |
| BsuI | GTATCC | 3 cut(s) | 132, 1430, 2584 |
| BsuRI | GGCC | 7 cut(s) | 95, 148, 194, 539, 665, 685, 1666 |
| BtgZI | GCGATG | 2 cut(s) | 912, 1755 |
| BtsCI | GGATG | 8 cut(s) | 277, 631, 925, 1366, 1687, 1783, 1918, 2428 |
| BtsI | GCAGTG | 2 cut(s) | 732, 2010 |
| BtsIMutI | CAGTG | 5 cut(s) | 56, 732, 1173, 2010, 2151 |
| BveI | ACCTGC | 4 cut(s) | 419, 471, 1576, 1745 |
| Cac8I | GCNNGC | 3 cut(s) | 549, 1299, 2487 |
| CaiI | CAGNNNCTG | 1 cut(s) | 328 |
| CciI | TCATGA | 1 cut(s) | 40 |
| CfoI | GCGC | 5 cut(s) | 307, 829, 1673, 2193, 2626 |
| Cfr10I | RCCGGY | 3 cut(s) | 554, 799, 1112 |
| Cfr13I | GGNCC | 5 cut(s) | 93, 132, 193, 1664, 1826 |
| CseI | GACGC | 1 cut(s) | 1118 |
| Csp6I | GTAC | 4 cut(s) | 558, 2278, 2322, 2368 |
| CspAI | ACCGGT | 1 cut(s) | 1112 |
| CviQI | GTAC | 4 cut(s) | 558, 2278, 2322, 2368 |
| DraIII | CACNNNGTG | 1 cut(s) | 2048 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2006 |
| EaeI | YGGCCR | 1 cut(s) | 537 |
| Eam1104I | CTCTTC | 5 cut(s) | 174, 183, 587, 1493, 2062 |
| EarI | CTCTTC | 5 cut(s) | 174, 183, 587, 1493, 2062 |
| EciI | GGCGGA | 2 cut(s) | 1597, 1947 |
| Eco130I | CCWWGG | 1 cut(s) | 1632 |
| Eco147I | AGGCCT | 1 cut(s) | 685 |
| Eco24I | GRGCYC | 3 cut(s) | 398, 1354, 1974 |
| Eco31I | GGTCTC | 2 cut(s) | 74, 1516 |
| Eco47I | GGWCC | 2 cut(s) | 132, 1826 |
| Eco57I | CTGAAG | 2 cut(s) | 1305, 2403 |
| Eco81I | CCTNAGG | 2 cut(s) | 1401, 1577 |
| Eco88I | CYCGRG | 3 cut(s) | 1022, 1355, 1428 |
| Eco91I | GGTNACC | 1 cut(s) | 1250 |
| EcoO109I | RGGNCCY | 3 cut(s) | 93, 132, 193 |
| EcoO65I | GGTNACC | 1 cut(s) | 1250 |
| EcoRII | CCWGG | 2 cut(s) | 915, 1752 |
| EcoT14I | CCWWGG | 1 cut(s) | 1632 |
| EcoT22I | ATGCAT | 1 cut(s) | 2428 |
| EcoT38I | GRGCYC | 3 cut(s) | 398, 1354, 1974 |
| ErhI | CCWWGG | 1 cut(s) | 1632 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 180, 212, 325, 357, 2447, 2479, 2486, 2518 |
| FaqI | GGGAC | 4 cut(s) | 1132, 1972, 2012, 2219 |
| FauI | CCCGC | 3 cut(s) | 133, 634, 1920 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| FblI | GTMKAC | 2 cut(s) | 1221, 2460 |
| FokI | GGATG | 8 cut(s) | 284, 638, 932, 1373, 1694, 1790, 1925, 2435 |
| FriOI | GRGCYC | 3 cut(s) | 398, 1354, 1974 |
| FspBI | CTAG | 7 cut(s) | 548, 794, 822, 1122, 1143, 1194, 2298 |
| FspI | TGCGCA | 1 cut(s) | 828 |
| GlaI | GCGC | 5 cut(s) | 306, 828, 1672, 2192, 2625 |
| GsaI | CCCAGC | 1 cut(s) | 210 |
| HaeII | RGCGCY | 1 cut(s) | 1674 |
| HaeIII | GGCC | 7 cut(s) | 95, 148, 194, 539, 665, 685, 1666 |
| HapII | CCGG | 5 cut(s) | 118, 448, 555, 800, 1113 |
| HgaI | GACGC | 1 cut(s) | 1118 |
| HhaI | GCGC | 5 cut(s) | 307, 829, 1673, 2193, 2626 |
| Hin1I | GRCGYC | 2 cut(s) | 2007, 2436 |
| Hin6I | GCGC | 5 cut(s) | 305, 827, 1671, 2191, 2624 |
| HinP1I | GCGC | 5 cut(s) | 305, 827, 1671, 2191, 2624 |
| HincII | GTYRAC | 1 cut(s) | 2461 |
| HindII | GTYRAC | 1 cut(s) | 2461 |
| HindIII | AAGCTT | 2 cut(s) | 2591, 2645 |
| HpaII | CCGG | 5 cut(s) | 118, 448, 555, 800, 1113 |
| HphI | GGTGA | 7 cut(s) | 391, 777, 860, 1244, 1557, 1649, 1983 |
| Hpy166II | GTNNAC | 5 cut(s) | 241, 947, 1222, 1622, 2461 |
| Hpy8I | GTNNAC | 5 cut(s) | 241, 947, 1222, 1622, 2461 |
| Hpy99I | CGWCG | 3 cut(s) | 1630, 1679, 2009 |
| HpyCH4III | ACNGT | 5 cut(s) | 944, 1169, 1177, 1626, 2282 |
| HpyCH4IV | ACGT | 4 cut(s) | 513, 1618, 2007, 2436 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 464, 805, 1559, 1568 |
| HpySE526I | ACGT | 4 cut(s) | 513, 1618, 2007, 2436 |
| Hsp92I | GRCGYC | 2 cut(s) | 2007, 2436 |
| HspAI | GCGC | 5 cut(s) | 305, 827, 1671, 2191, 2624 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| LguI | GCTCTTC | 1 cut(s) | 174 |
| LmnI | GCTCC | 4 cut(s) | 203, 1357, 2077, 2257 |
| Lsp1109I | GCAGC | 9 cut(s) | 306, 431, 529, 563, 795, 1093, 1288, 1495, 2476 |
| LweI | GCATC | 4 cut(s) | 940, 1549, 2413, 2608 |
| MaeI | CTAG | 7 cut(s) | 548, 794, 822, 1122, 1143, 1194, 2298 |
| MaeII | ACGT | 4 cut(s) | 513, 1618, 2007, 2436 |
| MaeIII | GTNAC | 5 cut(s) | 371, 776, 1250, 2008, 2432 |
| MbiI | CCGCTC | 2 cut(s) | 571, 1927 |
| MflI | RGATCY | 2 cut(s) | 1043, 2210 |
| MhlI | GDGCHC | 3 cut(s) | 398, 1354, 1974 |
| MlsI | TGGCCA | 1 cut(s) | 539 |
| MluNI | TGGCCA | 1 cut(s) | 539 |
| MlyI | GAGTC | 3 cut(s) | 26, 534, 1769 |
| MmeI | TCCRAC | 2 cut(s) | 1021, 1933 |
| Mox20I | TGGCCA | 1 cut(s) | 539 |
| Mph1103I | ATGCAT | 1 cut(s) | 2428 |
| MscI | TGGCCA | 1 cut(s) | 539 |
| MseI | TTAA | 8 cut(s) | 714, 894, 1200, 1455, 1539, 2165, 2411, 2454 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1178, 2558 |
| Msp20I | TGGCCA | 1 cut(s) | 539 |
| MspA1I | CMGCKG | 2 cut(s) | 1084, 1301 |
| MspCI | CTTAAG | 2 cut(s) | 2164, 2453 |
| MspI | CCGG | 5 cut(s) | 118, 448, 555, 800, 1113 |
| MspR9I | CCNGG | 3 cut(s) | 449, 917, 1754 |
| MvaI | CCWGG | 2 cut(s) | 917, 1754 |
| MvnI | CGCG | 4 cut(s) | 523, 1593, 2191, 2626 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 464, 805, 1559, 1568 |
| NciI | CCSGG | 1 cut(s) | 449 |
| NheI | GCTAGC | 1 cut(s) | 547 |
| NlaIV | GGNNCC | 5 cut(s) | 105, 134, 1045, 1353, 2253 |
| NmuCI | GTSAC | 3 cut(s) | 1250, 2008, 2432 |
| NsbI | TGCGCA | 1 cut(s) | 828 |
| NsiI | ATGCAT | 1 cut(s) | 2428 |
| NspI | RCATGY | 2 cut(s) | 846, 2430 |
| NspV | TTCGAA | 1 cut(s) | 435 |
| PaeR7I | CTCGAG | 1 cut(s) | 1428 |
| PagI | TCATGA | 1 cut(s) | 40 |
| PaqCI | CACCTGC | 1 cut(s) | 1576 |
| PceI | AGGCCT | 1 cut(s) | 685 |
| PciSI | GCTCTTC | 1 cut(s) | 174 |
| PfeI | GAWTC | 7 cut(s) | 255, 325, 347, 437, 1712, 1808, 1883 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2201 |
| PinAI | ACCGGT | 1 cut(s) | 1112 |
| PleI | GAGTC | 3 cut(s) | 25, 533, 1768 |
| PpsI | GAGTC | 3 cut(s) | 25, 533, 1768 |
| PpuMI | RGGWCCY | 1 cut(s) | 132 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1899 |
| PsiI | TTATAA | 1 cut(s) | 1614 |
| Psp5II | RGGWCCY | 1 cut(s) | 132 |
| Psp6I | CCWGG | 2 cut(s) | 915, 1752 |
| PspEI | GGTNACC | 1 cut(s) | 1250 |
| PspFI | CCCAGC | 1 cut(s) | 206 |
| PspGI | CCWGG | 2 cut(s) | 915, 1752 |
| PspN4I | GGNNCC | 5 cut(s) | 105, 134, 1045, 1353, 2253 |
| PspPI | GGNCC | 5 cut(s) | 93, 132, 193, 1664, 1826 |
| PspPPI | RGGWCCY | 1 cut(s) | 132 |
| PspXI | VCTCGAGB | 1 cut(s) | 1428 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1779, 1811 |
| PstI | CTGCAG | 2 cut(s) | 324, 1001 |
| PstNI | CAGNNNCTG | 1 cut(s) | 328 |
| PsuI | RGATCY | 2 cut(s) | 1043, 2210 |
| PvuII | CAGCTG | 2 cut(s) | 1084, 1301 |
| RsaI | GTAC | 4 cut(s) | 559, 2279, 2323, 2369 |
| RsaNI | GTAC | 4 cut(s) | 558, 2278, 2322, 2368 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1178, 2558 |
| SalI | GTCGAC | 1 cut(s) | 2459 |
| SapI | GCTCTTC | 1 cut(s) | 174 |
| SaqAI | TTAA | 8 cut(s) | 714, 894, 1200, 1455, 1539, 2165, 2411, 2454 |
| Sau96I | GGNCC | 5 cut(s) | 93, 132, 193, 1664, 1826 |
| SbfI | CCTGCAGG | 1 cut(s) | 1001 |
| SchI | GAGTC | 3 cut(s) | 26, 534, 1769 |
| ScrFI | CCNGG | 3 cut(s) | 449, 917, 1754 |
| SdaI | CCTGCAGG | 1 cut(s) | 1001 |
| SduI | GDGCHC | 3 cut(s) | 398, 1354, 1974 |
| SfaNI | GCATC | 4 cut(s) | 940, 1549, 2413, 2608 |
| SfcI | CTRYAG | 3 cut(s) | 320, 997, 1165 |
| Sfr274I | CTCGAG | 1 cut(s) | 1428 |
| SfuI | TTCGAA | 1 cut(s) | 435 |
| SinI | GGWCC | 2 cut(s) | 132, 1826 |
| SlaI | CTCGAG | 1 cut(s) | 1428 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1178, 2558 |
| SmlI | CTYRAG | 6 cut(s) | 1063, 1256, 1428, 1693, 2164, 2453 |
| SmoI | CTYRAG | 6 cut(s) | 1063, 1256, 1428, 1693, 2164, 2453 |
| SpeI | ACTAGT | 2 cut(s) | 821, 1142 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1001 |
| SseBI | AGGCCT | 1 cut(s) | 685 |
| SspI | AATATT | 1 cut(s) | 247 |
| SspMI | CTAG | 7 cut(s) | 548, 794, 822, 1122, 1143, 1194, 2298 |
| StuI | AGGCCT | 1 cut(s) | 685 |
| StyD4I | CCNGG | 3 cut(s) | 447, 915, 1752 |
| StyI | CCWWGG | 1 cut(s) | 1632 |
| TaaI | ACNGT | 5 cut(s) | 944, 1169, 1177, 1626, 2282 |
| TaiI | ACGT | 4 cut(s) | 516, 1621, 2010, 2439 |
| TaqI | TCGA | 6 cut(s) | 398, 435, 1429, 1472, 2102, 2460 |
| TatI | WGTACW | 1 cut(s) | 2367 |
| TauI | GCSGC | 2 cut(s) | 523, 1392 |
| TfiI | GAWTC | 7 cut(s) | 255, 325, 347, 437, 1712, 1808, 1883 |
| Tru1I | TTAA | 8 cut(s) | 714, 894, 1200, 1455, 1539, 2165, 2411, 2454 |
| Tru9I | TTAA | 8 cut(s) | 714, 894, 1200, 1455, 1539, 2165, 2411, 2454 |
| TscAI | CASTG | 5 cut(s) | 63, 739, 1180, 2017, 2158 |
| TseFI | GTSAC | 3 cut(s) | 1250, 2008, 2432 |
| TseI | GCWGC | 9 cut(s) | 319, 444, 517, 551, 808, 1081, 1301, 1508, 2489 |
| Tsp45I | GTSAC | 3 cut(s) | 1250, 2008, 2432 |
| TspDTI | ATGAA | 8 cut(s) | 29, 65, 475, 955, 1619, 1725, 2205, 2455 |
| TspGWI | ACGGA | 2 cut(s) | 353, 420 |
| TspRI | CASTG | 5 cut(s) | 63, 739, 1180, 2017, 2158 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2201 |
| Vha464I | CTTAAG | 2 cut(s) | 2164, 2453 |
| VpaK11BI | GGWCC | 2 cut(s) | 132, 1826 |
| XapI | RAATTY | 4 cut(s) | 215, 710, 752, 2264 |
| XbaI | TCTAGA | 1 cut(s) | 1193 |
| XceI | RCATGY | 2 cut(s) | 846, 2430 |
| XhoI | CTCGAG | 1 cut(s) | 1428 |
| XmiI | GTMKAC | 2 cut(s) | 1221, 2460 |
| XspI | CTAG | 7 cut(s) | 548, 794, 822, 1122, 1143, 1194, 2298 |
| ZraI | GACGTC | 2 cut(s) | 2008, 2437 |
| Zsp2I | ATGCAT | 1 cut(s) | 2428 |