Rmu_sc0004841.1_g000031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004841.1
OG0000153
Physical Location & Seq
Forward (+)
137870 .. 142454
4585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004841.1_g000031.1.cds

Sequence Viewer

Length: 423 bp
atgcttaggcttagtggatcaaagagtagttgcagggagatttttcaaatggaggaagctgtatccaagttgaggaaagagctttcgcatcttgaacaacaactaggaaagccgcaagaagacttacgcactagacttggtgatgacattagctcagatagcatgccacttggggacgaacgattagcaccaatcgactcctctactcctaaccaacctccccacggtggtggatcacgacatcgaggccggaaaacgaaggaacgaggcgaggaacctcacggggctaatttcagtctacgcctcattctccggatttcagccaccaaaatcttccaaacttggccgatcagaagcggcttgagacgtagatcatcctccccaaagcttttgccgagaatcgaaacgtggaggaggaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.96

Weight (kDa)

10.8

Isoelectric Point (pI)

73.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 312
AciI CCGC 2 cut(s) 113, 357
AclWI GGATC 2 cut(s) 25, 241
AcoI YGGCCR 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 72, 224, 227
AgsI TTSAA 2 cut(s) 47, 95
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 4 cut(s) 59, 82, 153, 388
AluI AGCT 4 cut(s) 59, 82, 153, 388
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 2 cut(s) 25, 241
Aor13HI TCCGGA 1 cut(s) 312
AoxI GGCC 2 cut(s) 247, 344
AsuHPI GGTGA 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 104, 132
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 2 cut(s) 113, 358
BlsI GCNGC 2 cut(s) 114, 359
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 224, 227
BseAI TCCGGA 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 3 cut(s) 72, 224, 227
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 249, 346
BsiSI CCGG 2 cut(s) 250, 313
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 72, 224, 227
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 249, 346
Bsp13I TCCGGA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 17, 233, 348, 371
BspACI CCGC 2 cut(s) 113, 357
BspANI GGCC 2 cut(s) 249, 346
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 2 cut(s) 25, 241
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 17, 233, 348, 371
Bst4CI ACNGT 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 5, 11, 154
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 4 cut(s) 20, 236, 351, 374
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 4 cut(s) 17, 233, 348, 371
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 249, 346
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 164
CviAII CATG 1 cut(s) 163
DdeI CTNAG 3 cut(s) 5, 11, 154
DpnI GATC 4 cut(s) 19, 235, 350, 373
DpnII GATC 4 cut(s) 17, 233, 348, 371
EaeI YGGCCR 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 113, 358
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 2 cut(s) 113, 358
FspBI CTAG 2 cut(s) 104, 132
GluI GCNGC 2 cut(s) 113, 358
HaeIII GGCC 2 cut(s) 249, 346
HapII CCGG 2 cut(s) 250, 313
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 2 cut(s) 197, 399
HpaII CCGG 2 cut(s) 250, 313
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 157, 353
Hpy188III TCNNGA 3 cut(s) 92, 237, 313
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 2 cut(s) 367, 407
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 3 cut(s) 5, 11, 154
HpySE526I ACGT 2 cut(s) 367, 407
Hsp92II CATG 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 312
Kzo9I GATC 4 cut(s) 17, 233, 348, 371
LpnPI CCDG 3 cut(s) 19, 263, 326
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 104, 132
MaeII ACGT 2 cut(s) 367, 407
MalI GATC 4 cut(s) 19, 235, 350, 373
MboI GATC 4 cut(s) 17, 233, 348, 371
MboII GAAGA 2 cut(s) 131, 325
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 191
MroI TCCGGA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 2 cut(s) 250, 313
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 4 cut(s) 17, 233, 348, 371
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 420
NspI RCATGY 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 228
PaeI GCATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 2 cut(s) 114, 359
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 228
SatI GCNGC 2 cut(s) 113, 358
Sau3AI GATC 4 cut(s) 17, 233, 348, 371
SchI GAGTC 1 cut(s) 191
SetI ASST 8 cut(s) 61, 84, 155, 220, 280, 370, 390, 410
SfaNI GCATC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
SphI GCATGC 1 cut(s) 166
Sse9I AATT 1 cut(s) 289
SsiI CCGC 2 cut(s) 113, 357
SspMI CTAG 2 cut(s) 104, 132
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 2 cut(s) 370, 410
TaqI TCGA 3 cut(s) 195, 244, 402
TasI AATT 1 cut(s) 289
TauI GCSGC 2 cut(s) 115, 360
TfiI GAWTC 1 cut(s) 399
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 2 cut(s) 104, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.