Rmu_sc0000800.1_g000021

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000800.1
OG0000153
Physical Location & Seq
Reverse (-)
70047 .. 70553
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000800.1_g000021.1.cds

Sequence Viewer

Length: 507 bp
atggcacaagcatctgcgtctcctcagcctactgaacttcatgaccaccacttctcactggaagatggtctcattcccgcttccaccgcgggggactgtgaaggtagctcagaggaggcatctcatgagttttctaggtgctttgtttctcccaagttcatatccaggtttcttattgagcggggagagtatcctgcagtacctatatgtttccagtatcctgcgaggaccactgagggttggccaaactgggccagcttcgaggtacaacaggaagagtttaaagaggcccttgttggagctagagtgaagatttcactgtttatttatggcttttgtgaggtttacaaagatgacatttgccttcgccatgtggtgcaaagatggaggtttattcagactggtgggactaggttgtgttcgaaagccaatagtgagaacaagagactactccgcagtaacactatcttgggtgtcatgtctagatttaaaccttccctatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

168

Amino Acids

19.12

Weight (kDa)

6.52

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 1 cut(s) 89
AciI CCGC 5 cut(s) 78, 87, 89, 181, 454
AcoI YGGCCR 1 cut(s) 242
AfaI GTAC 2 cut(s) 201, 267
AfiI CCNNNNNNNGG 1 cut(s) 90
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 108, 258, 302
AluI AGCT 3 cut(s) 108, 258, 302
Alw26I GTCTC 3 cut(s) 24, 74, 439
AoxI GGCC 3 cut(s) 242, 252, 288
AspS9I GGNCC 3 cut(s) 228, 252, 289
AsuII TTCGAA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 59, 378
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 2 cut(s) 201, 228
BcoDI GTCTC 3 cut(s) 24, 74, 439
BfaI CTAG 4 cut(s) 135, 303, 411, 483
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 2 cut(s) 201, 228
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 3 cut(s) 228, 252, 289
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 20, 128
BmuI ACTGGG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 4 cut(s) 63, 214, 254, 406
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 38, 123, 225
BseNI ACTGG 4 cut(s) 63, 214, 254, 406
BseRI GAGGAG 2 cut(s) 12, 128
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 3 cut(s) 244, 254, 290
BslFI GGGAC 2 cut(s) 107, 421
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 3 cut(s) 24, 74, 439
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 107, 421
BsnI GGCC 3 cut(s) 244, 254, 290
Bso31I GGTCTC 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 422
BspACI CCGC 5 cut(s) 78, 87, 89, 181, 454
BspANI GGCC 3 cut(s) 244, 254, 290
BspCNI CTCAG 3 cut(s) 37, 122, 226
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 2 cut(s) 40, 124
BspMAI CTGCAG 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 181
BsrI ACTGG 4 cut(s) 63, 214, 254, 406
BssECI CCNNGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 98, 321
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 24, 109, 234
BstDSI CCRYGG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 89
BstMAI GTCTC 3 cut(s) 24, 74, 439
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 89
BsuI GTATCC 2 cut(s) 201, 228
BsuRI GGCC 3 cut(s) 244, 254, 290
BtgI CCRYGG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 56, 231, 317
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 2 cut(s) 40, 124
Cfr13I GGNCC 3 cut(s) 228, 252, 289
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 200, 266
CviAII CATG 4 cut(s) 41, 125, 371, 478
CviJI RGCY 9 cut(s) 28, 108, 244, 254, 258, 290, 302, 333, 428
CviKI_1 RGCY 9 cut(s) 28, 108, 244, 254, 258, 290, 302, 333, 428
CviQI GTAC 2 cut(s) 200, 266
DdeI CTNAG 3 cut(s) 24, 109, 234
DraI TTTAAA 2 cut(s) 283, 490
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 4 cut(s) 44, 128, 374, 481
FaiI YATR 9 cut(s) 42, 126, 161, 206, 208, 330, 372, 479, 502
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 2 cut(s) 107, 421
FatI CATG 4 cut(s) 40, 124, 370, 477
FauI CCCGC 3 cut(s) 82, 85, 174
FspBI CTAG 4 cut(s) 135, 303, 411, 483
HaeIII GGCC 3 cut(s) 244, 254, 290
HgaI GACGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 44, 128, 374, 481
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 112, 399
Hpy188III TCNNGA 3 cut(s) 41, 125, 483
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 3 cut(s) 95, 374, 504
HpyCH4III ACNGT 2 cut(s) 98, 321
HpyCH4V TGCA 2 cut(s) 197, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 24, 109, 234
Hsp92II CATG 4 cut(s) 44, 128, 374, 481
KspI CCGCGG 1 cut(s) 90
LmnI GCTCC 1 cut(s) 299
LweI GCATC 2 cut(s) 20, 128
MaeI CTAG 4 cut(s) 135, 303, 411, 483
MaeIII GTNAC 1 cut(s) 458
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 3 cut(s) 74, 287, 322
MlsI TGGCCA 1 cut(s) 244
MluNI TGGCCA 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 9 cut(s) 33, 106, 109, 219, 229, 256, 280, 334, 381
Mox20I TGGCCA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 244
MseI TTAA 2 cut(s) 282, 489
Msp20I TGGCCA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 4 cut(s) 44, 128, 374, 481
NspV TTCGAA 1 cut(s) 422
PagI TCATGA 2 cut(s) 40, 124
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 3 cut(s) 228, 252, 289
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 2 cut(s) 201, 267
RsaNI GTAC 2 cut(s) 200, 266
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 2 cut(s) 282, 489
Sau96I GGNCC 3 cut(s) 228, 252, 289
ScrFI CCNGG 1 cut(s) 166
SfaNI GCATC 2 cut(s) 20, 128
SfcI CTRYAG 1 cut(s) 195
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 422
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 228
SsiI CCGC 5 cut(s) 78, 87, 89, 181, 454
SspMI CTAG 4 cut(s) 135, 303, 411, 483
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 98, 321
TaqI TCGA 2 cut(s) 261, 422
Tru1I TTAA 2 cut(s) 282, 489
Tru9I TTAA 2 cut(s) 282, 489
TscAI CASTG 3 cut(s) 63, 238, 324
TspDTI ATGAA 2 cut(s) 29, 148
TspRI CASTG 3 cut(s) 63, 238, 324
VpaK11BI GGWCC 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 482
XspI CTAG 4 cut(s) 135, 303, 411, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.