Rw7G028090

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000153
Physical Location & Seq
Reverse (-)
37497910 .. 37504845
6936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028090.1

Sequence Viewer

Length: 1743 bp
ATGGCACAAACATCTGAGTCTTCTCAGCCTACAGAACTTCATGACCACCATTTCTCACTGGAAGATGGTCTCATTCCTGCTTCCACCTCAGGGGCCTGTGAGGGTAGCCCAGAGGAGGCATCTCATGAGTTTTCTGGGTGCTTTGTCTCTCCCAAGTTCATATCCAGGTTGCTTATTGAGCGGGGAGAGTACCCTGCAGTGCCTATATGTTTCCGGTATCCTACAAGGACCCCTGCGGGTTGGCCTGAATGGGTCAGCTTTGAGGTACAGCAGGAAGAGCTTGAAGAGGCCCTTATTGGAGCTGGAGTGAAGATTTCACTGTTTATTTCCGGCTTTTGTGAGGTTTACAAAGATGACATTTGCCTTCGCCATGTGGTGCGAAGATGGAGGGAATTTACTCCTTCTTTGGAAGATGTTTGCAATATTATGCGAATCCCTATTGTTGGGGATGGTAATCCTTTCAAGATAGAGCTAAATAAGGCGCAGAAGAAGAAGCTGCAGATTCTGAAAAGGGGTGCTTATGATTCTAAAGAAGTGTTCCGTTTTTGTTACTGGGTAAGACACTTTTGGGGCTCGATGGACGGGGGCAAGTTTAAGCATGGTGCAGATTTTCCCTATGAGAATGTGCAGCCGCGAGTCTTCCCGTTGGCCATTATGCTAGCAGCCGGTACTTGTTTTCCGCTCGCTCCTCTCTTCCTTAGTCATCTATATAGGAAACTTGATCAGATTTCAAAGGATGATAAAGAAAGTGCGGGGCAATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGTTGTTTTGGACGACATTGGGAAATTCAATTTCAGACCATATTTCGCTGCTCATGGCTTCCAGACATTTCCTTTCTTTTACCCAGAGGGTAACTCATCACCGTTCCTAGAGCCGGTTGAGCTGCTTCTAACCACTAGTGCGCAGTCCATAATAGCATGTGGTGATTTCTTTGACCCCGTGATGGAGAAGTACTCTCCTCATAGAGTTAAGAGGCAATTTGGCATCGACCAGGATGTGCCATCGCATCTATCCTATGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACAGATGGTATTTCCTGCAGGGGTATGCTCTCTGATAGTCTCGGGAAGAAAGGCTGTGTTGGATCCCCTACATCAACATTCTTGAGGTTTTGGGAGTTGCAACGGTGCGAGTTTAGGAGCAAGAGCGCTACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGAGGGGAAGGCAGAAAGAAGGTTTGCCGCTTCAAACCTAAGGTAGCCAGAGATCGTATCCCCCCTCCAGTAGCCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATTGAGTTCGGCTTGTGAAAAAGGGAAGAAGAGGAAAGCTGCTTCTACCCTGAGACCAAGTGGGGTTATTAAGAGGAAGGTTGCAGATGATGCCTCACCTGCCGTCCTTAGGCGGAGTTCTCGTGTGGCCAACATGAACTTTTGTAAACGTAAACCGTCGTCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGTGTCGACGGGGATGGTAGCCCCCTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGGCCTGCGATGGTGGTAGCCAGGTATCCTTTTCTGGCCCGACATCCTTTCCTCTTTTTTTTTTGGTTGCATGGCCTGCGATTTACTTGTTATTTTCTTTCCTCATAGGTGGAGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

580

Amino Acids

64.63

Weight (kDa)

8.81

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 273 - 349 3.9e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1465
Acc16I TGCGCA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 1465
AccBSI CCGCTC 2 cut(s) 181, 682
AccI GTMKAC 1 cut(s) 1563
AccII CGCG 1 cut(s) 634
AciI CCGC 7 cut(s) 181, 236, 632, 680, 752, 1279, 1471
AclWI GGATC 2 cut(s) 1149, 1162
AcoI YGGCCR 2 cut(s) 648, 1485
AcsI RAATTY 2 cut(s) 392, 821
AfaI GTAC 4 cut(s) 191, 267, 670, 989
AfeI AGCGCT 1 cut(s) 1219
AfiI CCNNNNNNNGG 6 cut(s) 90, 115, 443, 910, 979, 1467
AgsI TTSAA 5 cut(s) 284, 463, 732, 826, 1285
AhlI ACTAGT 1 cut(s) 932
AjnI CCWGG 3 cut(s) 164, 1026, 1641
AluBI AGCT 7 cut(s) 258, 280, 302, 472, 496, 919, 1397
AluI AGCT 7 cut(s) 258, 280, 302, 472, 496, 919, 1397
Alw26I GTCTC 4 cut(s) 74, 151, 1136, 1405
AlwI GGATC 2 cut(s) 1149, 1162
AlwNI CAGNNNCTG 1 cut(s) 505
Ama87I CYCGRG 1 cut(s) 1133
Aor51HI AGCGCT 1 cut(s) 1219
ApeKI GCWGC 6 cut(s) 496, 628, 662, 845, 919, 1397
ApoI RAATTY 2 cut(s) 392, 821
AspLEI GCGC 3 cut(s) 484, 940, 1220
AspS9I GGNCC 5 cut(s) 93, 228, 289, 1553, 1658
AsuHPI GGTGA 4 cut(s) 888, 971, 1446, 1538
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 1 cut(s) 1133
AvaII GGWCC 1 cut(s) 228
AxyI CCTNAGG 3 cut(s) 88, 1290, 1466
BalI TGGCCA 2 cut(s) 650, 1487
BamHI GGATCC 1 cut(s) 1154
BanII GRGCYC 1 cut(s) 575
BauI CACGAG 1 cut(s) 1479
BbsI GAAGAC 2 cut(s) 12, 631
BbvI GCAGC 6 cut(s) 483, 640, 674, 832, 906, 1384
BceAI ACGGC 1 cut(s) 1445
BciT130I CCWGG 3 cut(s) 166, 1028, 1643
BciVI GTATCC 3 cut(s) 228, 1319, 1657
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 4 cut(s) 74, 151, 1136, 1405
BcuI ACTAGT 1 cut(s) 932
BfaI CTAG 3 cut(s) 659, 905, 933
BfmI CTRYAG 4 cut(s) 30, 195, 497, 1108
BfoI RGCGCY 1 cut(s) 1221
BfuAI ACCTGC 1 cut(s) 1465
BfuI GTATCC 3 cut(s) 228, 1319, 1657
BisI GCNGC 8 cut(s) 497, 629, 632, 663, 846, 920, 1279, 1398
BlsI GCNGC 8 cut(s) 498, 630, 633, 664, 847, 921, 1280, 1399
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 3 cut(s) 166, 1028, 1643
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 1133
BmgT120I GGNCC 5 cut(s) 93, 228, 289, 1553, 1658
BmiI GGNNCC 3 cut(s) 94, 230, 1156
BmrFI CCNGG 3 cut(s) 166, 1028, 1643
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 5 cut(s) 128, 1029, 1051, 1083, 1438
BmtI GCTAGC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 2 cut(s) 12, 631
BplI GAGNNNNNCTC 4 cut(s) 875, 907, 974, 1006
BpmI CTGGAG 2 cut(s) 324, 1302
BpuEI CTTGAG 1 cut(s) 1195
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 2 cut(s) 74, 1405
BsaJI CCNNGG 2 cut(s) 1245, 1521
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 6 cut(s) 291, 321, 1465, 1495, 1586, 1616
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 115, 443, 910, 979, 1467
Bse118I RCCGGY 2 cut(s) 665, 910
Bse1I ACTGG 3 cut(s) 63, 557, 1319
Bse21I CCTNAGG 3 cut(s) 88, 1290, 1466
Bse3DI GCAATG 1 cut(s) 764
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 3 cut(s) 166, 1028, 1643
BseDI CCNNGG 2 cut(s) 1245, 1521
BseGI GGATG 6 cut(s) 454, 742, 1036, 1255, 1576, 1664
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 6 cut(s) 90, 115, 443, 910, 979, 1467
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 5 cut(s) 6, 38, 102, 1400, 1574
BseNI ACTGG 3 cut(s) 63, 557, 1319
BseRI GAGGAG 4 cut(s) 128, 678, 984, 1607
BseXI GCAGC 6 cut(s) 483, 640, 674, 832, 906, 1384
BsgI GTGCAG 2 cut(s) 624, 647
Bsh1236I CGCG 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 1133
BsiSI CCGG 4 cut(s) 214, 330, 666, 911
BslI CCNNNNNNNGG 6 cut(s) 90, 115, 443, 910, 979, 1467
BsmAI GTCTC 4 cut(s) 74, 151, 1136, 1405
Bso31I GGTCTC 2 cut(s) 74, 1405
BsoBI CYCGRG 1 cut(s) 1133
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 4 cut(s) 721, 1154, 1303, 1540
BspACI CCGC 7 cut(s) 181, 236, 632, 680, 752, 1279, 1471
BspCNI CTCAG 5 cut(s) 7, 37, 101, 1401, 1575
BspFNI CGCG 1 cut(s) 634
BspHI TCATGA 2 cut(s) 40, 124
BspLI GGNNCC 3 cut(s) 94, 230, 1156
BspMAI CTGCAG 3 cut(s) 199, 501, 1112
BspMI ACCTGC 1 cut(s) 1465
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 2 cut(s) 1149, 1162
BspQI GCTCTTC 1 cut(s) 270
BspTNI GGTCTC 2 cut(s) 74, 1405
BsrBI CCGCTC 2 cut(s) 181, 682
BsrDI GCAATG 1 cut(s) 764
BsrFI RCCGGY 2 cut(s) 665, 910
BsrI ACTGG 3 cut(s) 63, 557, 1319
BssAI RCCGGY 2 cut(s) 665, 910
BssECI CCNNGG 2 cut(s) 1245, 1521
BssMI GATC 4 cut(s) 721, 1154, 1303, 1540
BssSI CACGAG 1 cut(s) 1479
BssT1I CCWWGG 1 cut(s) 1521
Bst2BI CACGAG 1 cut(s) 1479
Bst2UI CCWGG 3 cut(s) 166, 1028, 1643
Bst4CI ACNGT 4 cut(s) 321, 900, 1197, 1515
Bst6I CTCTTC 4 cut(s) 270, 279, 698, 1382
BstAPI GCANNNNNTGC 2 cut(s) 1448, 1697
BstC8I GCNNGC 4 cut(s) 660, 684, 1627, 1698
BstDEI CTNAG 9 cut(s) 15, 24, 88, 698, 1290, 1409, 1466, 1544, 1583
BstF5I GGATG 6 cut(s) 454, 742, 1036, 1255, 1576, 1664
BstFNI CGCG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 1221
BstHHI GCGC 3 cut(s) 484, 940, 1220
BstKTI GATC 4 cut(s) 724, 1157, 1306, 1543
BstMAI GTCTC 4 cut(s) 74, 151, 1136, 1405
BstMBI GATC 4 cut(s) 721, 1154, 1303, 1540
BstMWI GCNNNNNNNGC 7 cut(s) 178, 277, 916, 1331, 1448, 1457, 1697
BstNI CCWGG 3 cut(s) 166, 1028, 1643
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 3 cut(s) 164, 1026, 1641
BstSFI CTRYAG 4 cut(s) 30, 195, 497, 1108
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 6 cut(s) 483, 640, 674, 832, 906, 1384
BstV2I GAAGAC 2 cut(s) 12, 631
BstX2I RGATCY 1 cut(s) 1154
BstYI RGATCY 1 cut(s) 1154
Bsu36I CCTNAGG 3 cut(s) 88, 1290, 1466
BsuI GTATCC 3 cut(s) 228, 1319, 1657
BtgZI GCGATG 2 cut(s) 1023, 1644
BtsCI GGATG 6 cut(s) 454, 742, 1036, 1255, 1576, 1664
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 56, 204, 317
BveI ACCTGC 1 cut(s) 1465
Cac8I GCNNGC 4 cut(s) 660, 684, 1627, 1698
CaiI CAGNNNCTG 1 cut(s) 505
CciI TCATGA 2 cut(s) 40, 124
CfoI GCGC 3 cut(s) 484, 940, 1220
Cfr10I RCCGGY 2 cut(s) 665, 910
Cfr13I GGNCC 5 cut(s) 93, 228, 289, 1553, 1658
Csp6I GTAC 4 cut(s) 190, 266, 669, 988
CviAII CATG 9 cut(s) 41, 125, 371, 599, 851, 954, 1078, 1492, 1692
CviQI GTAC 4 cut(s) 190, 266, 669, 988
DdeI CTNAG 9 cut(s) 15, 24, 88, 698, 1290, 1409, 1466, 1544, 1583
DpnI GATC 4 cut(s) 723, 1156, 1305, 1542
DpnII GATC 4 cut(s) 721, 1154, 1303, 1540
EaeI YGGCCR 2 cut(s) 648, 1485
Eam1104I CTCTTC 4 cut(s) 270, 279, 698, 1382
EarI CTCTTC 4 cut(s) 270, 279, 698, 1382
EciI GGCGGA 1 cut(s) 1486
Eco130I CCWWGG 1 cut(s) 1521
Eco147I AGGCCT 2 cut(s) 796, 1625
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 2 cut(s) 74, 1405
Eco47I GGWCC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 1219
Eco81I CCTNAGG 3 cut(s) 88, 1290, 1466
Eco88I CYCGRG 1 cut(s) 1133
EcoO109I RGGNCCY 3 cut(s) 93, 228, 289
EcoRII CCWGG 3 cut(s) 164, 1026, 1641
EcoT14I CCWWGG 1 cut(s) 1521
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 1521
FaeI CATG 9 cut(s) 44, 128, 374, 602, 854, 957, 1081, 1495, 1695
FalI AAGNNNNNCTT 6 cut(s) 276, 308, 502, 534, 1319, 1351
FatI CATG 9 cut(s) 40, 124, 370, 598, 850, 953, 1077, 1491, 1691
FauI CCCGC 3 cut(s) 174, 229, 745
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 1563
Fnu4HI GCNGC 8 cut(s) 497, 629, 632, 663, 846, 920, 1279, 1398
FokI GGATG 6 cut(s) 461, 749, 1043, 1262, 1583, 1651
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 8 cut(s) 497, 629, 632, 663, 846, 920, 1279, 1398
FspBI CTAG 3 cut(s) 659, 905, 933
FspI TGCGCA 1 cut(s) 939
GlaI GCGC 3 cut(s) 483, 939, 1219
GluI GCNGC 8 cut(s) 497, 629, 632, 663, 846, 920, 1279, 1398
GsuI CTGGAG 2 cut(s) 324, 1302
HaeII RGCGCY 1 cut(s) 1221
HapII CCGG 4 cut(s) 214, 330, 666, 911
HhaI GCGC 3 cut(s) 484, 940, 1220
Hin1II CATG 9 cut(s) 44, 128, 374, 602, 854, 957, 1081, 1495, 1695
Hin6I GCGC 3 cut(s) 482, 938, 1218
HinP1I GCGC 3 cut(s) 482, 938, 1218
HincII GTYRAC 1 cut(s) 1564
HindII GTYRAC 1 cut(s) 1564
HinfI GANTC 7 cut(s) 17, 432, 502, 524, 636, 1601, 1734
HpaII CCGG 4 cut(s) 214, 330, 666, 911
HphI GGTGA 4 cut(s) 888, 971, 1446, 1538
Hpy166II GTNNAC 5 cut(s) 346, 1058, 1505, 1511, 1564
Hpy188I TCNGA 9 cut(s) 16, 507, 726, 767, 833, 1092, 1126, 1246, 1606
Hpy188III TCNNGA 6 cut(s) 41, 125, 463, 859, 1135, 1174
Hpy8I GTNNAC 5 cut(s) 346, 1058, 1505, 1511, 1564
Hpy99I CGWCG 2 cut(s) 1519, 1568
HpyAV CCTTC 8 cut(s) 374, 411, 762, 766, 775, 1253, 1264, 1429
HpyCH4III ACNGT 4 cut(s) 321, 900, 1197, 1515
HpyCH4IV ACGT 1 cut(s) 1507
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 277, 916, 1331, 1448, 1457, 1697
HpyF3I CTNAG 9 cut(s) 15, 24, 88, 698, 1290, 1409, 1466, 1544, 1583
HpySE526I ACGT 1 cut(s) 1507
Hsp92II CATG 9 cut(s) 44, 128, 374, 602, 854, 957, 1081, 1495, 1695
HspAI GCGC 3 cut(s) 482, 938, 1218
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 4 cut(s) 721, 1154, 1303, 1540
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 299, 691, 1209
Lsp1109I GCAGC 6 cut(s) 483, 640, 674, 832, 906, 1384
LweI GCATC 5 cut(s) 128, 1029, 1051, 1083, 1438
MaeI CTAG 3 cut(s) 659, 905, 933
MaeII ACGT 1 cut(s) 1507
MaeIII GTNAC 2 cut(s) 548, 887
MalI GATC 4 cut(s) 723, 1156, 1305, 1542
MbiI CCGCTC 2 cut(s) 181, 682
MboI GATC 4 cut(s) 721, 1154, 1303, 1540
MflI RGATCY 1 cut(s) 1154
MhlI GDGCHC 1 cut(s) 575
MlsI TGGCCA 2 cut(s) 650, 1487
MluCI AATT 4 cut(s) 392, 821, 826, 1013
MluNI TGGCCA 2 cut(s) 650, 1487
MlyI GAGTC 4 cut(s) 26, 645, 1610, 1743
MmeI TCCRAC 1 cut(s) 1132
Mox20I TGGCCA 2 cut(s) 650, 1487
MscI TGGCCA 2 cut(s) 650, 1487
MseI TTAA 4 cut(s) 594, 1005, 1344, 1428
Msp20I TGGCCA 2 cut(s) 650, 1487
MspI CCGG 4 cut(s) 214, 330, 666, 911
MspR9I CCNGG 3 cut(s) 166, 1028, 1643
MvaI CCWGG 3 cut(s) 166, 1028, 1643
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 7 cut(s) 178, 277, 916, 1331, 1448, 1457, 1697
NdeII GATC 4 cut(s) 721, 1154, 1303, 1540
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 9 cut(s) 44, 128, 374, 602, 854, 957, 1081, 1495, 1695
NlaIV GGNNCC 3 cut(s) 94, 230, 1156
NsbI TGCGCA 1 cut(s) 939
NspI RCATGY 1 cut(s) 957
PagI TCATGA 2 cut(s) 40, 124
PaqCI CACCTGC 1 cut(s) 1465
PceI AGGCCT 2 cut(s) 796, 1625
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 432, 502, 524
PkrI GCNGC 8 cut(s) 498, 630, 633, 664, 847, 921, 1280, 1399
PleI GAGTC 4 cut(s) 25, 644, 1609, 1742
PpsI GAGTC 4 cut(s) 25, 644, 1609, 1742
PpuMI RGGWCCY 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 164, 1026, 1641
PspGI CCWGG 3 cut(s) 164, 1026, 1641
PspN4I GGNNCC 3 cut(s) 94, 230, 1156
PspPI GGNCC 5 cut(s) 93, 228, 289, 1553, 1658
PspPPI RGGWCCY 1 cut(s) 228
PstI CTGCAG 3 cut(s) 199, 501, 1112
PstNI CAGNNNCTG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 1154
RsaI GTAC 4 cut(s) 191, 267, 670, 989
RsaNI GTAC 4 cut(s) 190, 266, 669, 988
SalI GTCGAC 1 cut(s) 1562
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 594, 1005, 1344, 1428
SatI GCNGC 8 cut(s) 497, 629, 632, 663, 846, 920, 1279, 1398
Sau3AI GATC 4 cut(s) 721, 1154, 1303, 1540
Sau96I GGNCC 5 cut(s) 93, 228, 289, 1553, 1658
SbfI CCTGCAGG 1 cut(s) 1112
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 4 cut(s) 26, 645, 1610, 1743
ScrFI CCNGG 3 cut(s) 166, 1028, 1643
SdaI CCTGCAGG 1 cut(s) 1112
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 5 cut(s) 128, 1029, 1051, 1083, 1438
SfcI CTRYAG 4 cut(s) 30, 195, 497, 1108
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 1174
SmoI CTYRAG 1 cut(s) 1174
SpeI ACTAGT 1 cut(s) 932
Sse8387I CCTGCAGG 1 cut(s) 1112
Sse9I AATT 4 cut(s) 392, 821, 826, 1013
SseBI AGGCCT 2 cut(s) 796, 1625
SsiI CCGC 7 cut(s) 181, 236, 632, 680, 752, 1279, 1471
SspI AATATT 1 cut(s) 424
SspMI CTAG 3 cut(s) 659, 905, 933
StuI AGGCCT 2 cut(s) 796, 1625
StyD4I CCNGG 3 cut(s) 164, 1026, 1641
StyI CCWWGG 1 cut(s) 1521
TaaI ACNGT 4 cut(s) 321, 900, 1197, 1515
TaiI ACGT 1 cut(s) 1510
TaqI TCGA 3 cut(s) 575, 1023, 1563
TasI AATT 4 cut(s) 392, 821, 826, 1013
TatI WGTACW 1 cut(s) 987
TauI GCSGC 2 cut(s) 634, 1281
TfiI GAWTC 3 cut(s) 432, 502, 524
Tru1I TTAA 4 cut(s) 594, 1005, 1344, 1428
Tru9I TTAA 4 cut(s) 594, 1005, 1344, 1428
TscAI CASTG 3 cut(s) 63, 204, 324
TseI GCWGC 6 cut(s) 496, 628, 662, 845, 919, 1397
TspDTI ATGAA 3 cut(s) 29, 148, 1508
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 63, 204, 324
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 2 cut(s) 392, 821
XceI RCATGY 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 1563
XspI CTAG 3 cut(s) 659, 905, 933
ZrmI AGTACT 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.