Rh1DG275700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000153
Physical Location & Seq
Reverse (-)
49620305 .. 49621879
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG275700.1

Sequence Viewer

Length: 726 bp
ATGGCACAAGCATCTGAGTCTTCTCAGCCTACTGAACTTCATGACCACCACTTCTCACTGGAAGATGGTCTCATTCCTGCTTCCACCGCGGGGGACTGTGAAGGTAGCTCAGAGGAGGCATCTCATGAGTTTTCTGGGTGTTTTGTTTCTCCCAAGTTCATATCCAGATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGTTGTTTTGGATGACATTGGGAAATTCAATTTCAGACCATACTTCGCCGCTCATGGCTTTCAGACATTTCCCTTCTTTTATCCAGAGGGTAACTCATCACCGTTCCTAGAGCCGGTTGAGTTGCTTCTAACCACCAGTGCGCAGTCCATAATAGCATGTGGCGATTTCTTTGACCCCGTGATGGAGAAGTATTCTCCTCATAGAGTTAAGAGGCAATTTGGCATTGACCAGGATGTGCCATCGCATCTATCTTACGGTGGACACCTTGGGGATTGCATCATGGGTTTTACTCGGACAGATGGTATTTCTTGCAGGGGTATGCTCTCCGATAGCCTCGGGAAGAAGGACTGTGTTGGATCCCCCACATCAACATTCTTGAGATTTTGGGAGTTGCAGCGGTGCGAGTTTAGGAGGTTTATTCAAACTGGTGGGACTAGGTTGCGTCCGAAAGCCACTAGTGAGAACAAGAGACTACTCCACAGTAGCACTGTCATGGGTGTCATGTCTAGACTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

241

Amino Acids

27.0

Weight (kDa)

7.66

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 53 - 152 2e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 1 cut(s) 89
AciI CCGC 4 cut(s) 87, 89, 255, 604
AclWI GGATC 2 cut(s) 558, 571
AcsI RAATTY 1 cut(s) 230
AfiI CCNNNNNNNGG 3 cut(s) 90, 319, 388
AgsI TTSAA 2 cut(s) 235, 629
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 74, 670
AlwI GGATC 2 cut(s) 558, 571
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 2 cut(s) 183, 203
ApeKI GCWGC 1 cut(s) 601
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 542
BamHI GGATCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 613
BccI CCATC 5 cut(s) 59, 162, 382, 454, 500
BciT130I CCWGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 74, 670
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 4 cut(s) 314, 642, 663, 714
BisI GCNGC 2 cut(s) 255, 602
BlsI GCNGC 2 cut(s) 256, 603
Bme1390I CCNGG 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 4 cut(s) 20, 128, 460, 492
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpuEI CTTGAG 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 87, 472, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 319, 388
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 63, 342, 637
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 3 cut(s) 87, 472, 541
BseGI GGATG 2 cut(s) 223, 445
BseLI CCNNNNNNNGG 3 cut(s) 90, 319, 388
BseMII CTCAG 3 cut(s) 6, 38, 123
BseNI ACTGG 3 cut(s) 63, 342, 637
BseRI GAGGAG 2 cut(s) 128, 393
BseXI GCAGC 1 cut(s) 613
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 185, 205
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 2 cut(s) 107, 652
BslI CCNNNNNNNGG 3 cut(s) 90, 319, 388
BsmAI GTCTC 2 cut(s) 74, 670
BsmFI GGGAC 2 cut(s) 107, 652
BsnI GGCC 2 cut(s) 185, 205
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 542
Bsp143I GATC 1 cut(s) 563
BspACI CCGC 4 cut(s) 87, 89, 255, 604
BspANI GGCC 2 cut(s) 185, 205
BspCNI CTCAG 3 cut(s) 7, 37, 122
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 2 cut(s) 40, 124
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 2 cut(s) 558, 571
BspTNI GGTCTC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 3 cut(s) 63, 342, 637
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 87, 472, 541
BssMI GATC 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 6 cut(s) 98, 309, 464, 557, 689, 697
BstDEI CTNAG 3 cut(s) 15, 24, 109
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 223, 445
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 1 cut(s) 566
BstMAI GTCTC 2 cut(s) 74, 670
BstMBI GATC 1 cut(s) 563
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 435
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BsuRI GGCC 2 cut(s) 185, 205
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 223, 445
BtsIMutI CAGTG 3 cut(s) 56, 349, 693
CciI TCATGA 2 cut(s) 40, 124
CfoI GCGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 319
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 1 cut(s) 638
CviAII CATG 7 cut(s) 41, 125, 260, 363, 487, 700, 709
CviJI RGCY 8 cut(s) 28, 108, 185, 205, 264, 319, 540, 659
CviKI_1 RGCY 8 cut(s) 28, 108, 185, 205, 264, 319, 540, 659
DdeI CTNAG 3 cut(s) 15, 24, 109
DpnI GATC 1 cut(s) 565
DpnII GATC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 7 cut(s) 44, 128, 263, 366, 490, 703, 712
FaqI GGGAC 2 cut(s) 107, 652
FatI CATG 7 cut(s) 40, 124, 259, 362, 486, 699, 708
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 255, 602
FokI GGATG 2 cut(s) 230, 452
Fsp4HI GCNGC 2 cut(s) 255, 602
FspBI CTAG 4 cut(s) 314, 642, 663, 714
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 255, 602
HaeIII GGCC 2 cut(s) 185, 205
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 349
Hin1II CATG 7 cut(s) 44, 128, 263, 366, 490, 703, 712
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 8 cut(s) 16, 112, 176, 242, 270, 501, 535, 654
Hpy188III TCNNGA 7 cut(s) 41, 125, 165, 290, 544, 583, 714
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 6 cut(s) 95, 171, 175, 184, 289, 544
HpyCH4III ACNGT 6 cut(s) 98, 309, 464, 557, 689, 697
HpyCH4V TGCA 4 cut(s) 197, 483, 519, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 15, 24, 109
Hsp92II CATG 7 cut(s) 44, 128, 263, 366, 490, 703, 712
HspAI GCGC 1 cut(s) 347
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 1 cut(s) 563
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 4 cut(s) 20, 128, 460, 492
MaeI CTAG 4 cut(s) 314, 642, 663, 714
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 565
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 563
MboII GAAGA 3 cut(s) 12, 74, 559
MflI RGATCY 1 cut(s) 563
MluCI AATT 4 cut(s) 230, 235, 422, 721
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 7 cut(s) 106, 109, 286, 411, 414, 551, 612
MseI TTAA 3 cut(s) 414, 720, 724
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 2 cut(s) 89, 604
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 563
NlaIII CATG 7 cut(s) 44, 128, 263, 366, 490, 703, 712
NlaIV GGNNCC 1 cut(s) 565
NsbI TGCGCA 1 cut(s) 348
NspI RCATGY 1 cut(s) 366
PacI TTAATTAA 1 cut(s) 724
PagI TCATGA 2 cut(s) 40, 124
PceI AGGCCT 1 cut(s) 205
PkrI GCNGC 2 cut(s) 256, 603
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 565
PsuI RGATCY 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 698
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 3 cut(s) 414, 720, 724
SatI GCNGC 2 cut(s) 255, 602
Sau3AI GATC 1 cut(s) 563
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 437
SetI ASST 5 cut(s) 106, 110, 474, 623, 647
SfaNI GCATC 4 cut(s) 20, 128, 460, 492
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 4 cut(s) 230, 235, 422, 721
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 4 cut(s) 87, 89, 255, 604
SspMI CTAG 4 cut(s) 314, 642, 663, 714
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 6 cut(s) 98, 309, 464, 557, 689, 697
TasI AATT 4 cut(s) 230, 235, 422, 721
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 414, 720, 724
Tru9I TTAA 3 cut(s) 414, 720, 724
TscAI CASTG 3 cut(s) 63, 349, 700
TseI GCWGC 1 cut(s) 601
TspDTI ATGAA 2 cut(s) 29, 148
TspRI CASTG 3 cut(s) 63, 349, 700
XapI RAATTY 1 cut(s) 230
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 1 cut(s) 366
XspI CTAG 4 cut(s) 314, 642, 663, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.