Rw2G016920

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000153
Physical Location & Seq
Forward (+)
20453609 .. 20455819
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016920.1

Sequence Viewer

Length: 1890 bp
ATGGCACAAACATCTGAGTCTTCTCAGCCTACAGAACTTCATGACCACCGCTTCTCGCTGGAAGATGGTCTCATTCCTGCTTCCACCGCGGGGGCTTGTGAGGGTAGCCCAGAGGAGGCATCTCATGAGTTTTCTGGGTGCTTTGTCTCCCCCAAGTTCATATGCAGGTTGCTCATTGAGTGGGGAGAGTACCCTGCAGTGCCTATATGTTTCCGGTATCCTGCAAGGACCCCTGCGGGTTGGCCTGAATGGGTCAGCTTTGAGGTACAGCAGGAAGAGCTTGAAGAGGCCCTTATTGGAGCTGGAGTGAAGATTTCACTGTTTATTTCAGGCTTTTGTGAGCTTTACAAAGATGACATTTGCCTTCGCCATGTGGTGAGAAGATGGAGTCCTGAAACTCACACTTTCATCTGTTCTTGGGGGGAATTTACTCCTTCTTTGGAAGATGTTTGCAATATTATGCGAATCCCTATTGTTGGGGATGGTAATCCTTTCAAGATAGAGCTAAATAAAGCGCAGAAGAAGAAGCTGCAGATTCTGAAAAGGGGTGCTTATGATTCTAAAGAAGTGTTCCGTTTTTGTTACTGGGTGAGACACTTTTGGGGCTCGATGGACGGAGGCAAGTTTAAGCATGGTGCAGATTTTCCCTATGAGAATGTGCAGCCGCGAGTCTTCCCGTTGGCCATTATGCTAGCAGCCGGTACTTGTTTTCCGCTCGTTCCTCTCTTCCTTAGTCATCTATATAGGAAACTTGATCAGATTTCAAAGGATGATAAAGAAGGTGCGGGGCAATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGTTGTTTTGGACGACATGGGGAAATTCAATTTCAGACCATATTTCGCCGCTCATGGCTTCCAGACATTTCCTTTCTTTTACCCAGAGGGTAACTCATCACCGTTCCTAGAGACGGTTGAGCTGCTTCTAACCACTAGTGCGCAGTCCATAATAGCATGTGGTGATTTCTTTGACCCTGTGAAGGAGAAGTACTCTCCTCACAGAGTTAAGAGGCAATTTGGCATAGACCAGGATGTGCCATCGCATCTATCCTATGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACAGATGGTATTTCCTGCAGGGATATGCTCTCTGATAGTCTCGGGAAGAAAGGCTGTGTTGGATCCCCTACATCAACATTCTTGAGGTTTTGGGAGTTGCAGCGGTGCGAGTTTAGGAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTATAAAGCGTGTGGTTGGTCACCTCAAGGGTGGTAAAAGTGGAGATGATCCTGGAGTAGAGTTGCCAGCTGCCGGAGTGGAGAAAGGTAGCAAGAGCACTACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGAGGGGAAGGCAGAAGGAAGGTTTACCGCTTCAAACCTAAGGTAGCCAAAGATCGTATCCCTCCTCCAGTAGTCAAGAGTGTCTTTGGTGTTAAAGTGATACTGCCATCGAGTTCGGCTTGTGAAAAAGGGAAGAAGAGGAAAGTTGCTTCTACCCTTAGACCAAGTGGGGTTATTAAGAGGAAGGTTGCAGATGATGCCTCTCCTGCCGTCCTTAGGCGGAGTTCTCGTGTGGCCAACATGAACTTTTGTAAACGTAAACCGTCGTCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGTGTTGACGGGGATGGTAGCCCCCTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGACCTGCGATGGTGGTAGCCAGGTATCCTTCTCTGGCACGACATCCTTTCCCTTAATATATATTTGGTTGCATGGCGTGCGATTTACTTGTTATGTTCTTTCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

629

Amino Acids

70.11

Weight (kDa)

8.73

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 110 - 259 2.4e-14 Plant mobile domain
PMD PF10536 279 - 360 2.5e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 972
Acc36I ACCTGC 2 cut(s) 156, 1793
AccBSI CCGCTC 2 cut(s) 715, 881
AccI GTMKAC 1 cut(s) 1269
AccII CGCG 2 cut(s) 89, 667
AclWI GGATC 3 cut(s) 1182, 1195, 1322
AcoI YGGCCR 2 cut(s) 681, 1644
AcsI RAATTY 2 cut(s) 425, 854
AfaI GTAC 4 cut(s) 191, 267, 703, 1022
AfiI CCNNNNNNNGG 7 cut(s) 90, 115, 476, 943, 1012, 1352, 1626
AgsI TTSAA 5 cut(s) 284, 496, 765, 859, 1444
AhlI ACTAGT 1 cut(s) 965
AjnI CCWGG 3 cut(s) 1059, 1330, 1800
AluBI AGCT 8 cut(s) 258, 280, 302, 343, 505, 529, 952, 1349
AluI AGCT 8 cut(s) 258, 280, 302, 343, 505, 529, 952, 1349
Alw21I GWGCWC 1 cut(s) 1379
Alw26I GTCTC 6 cut(s) 74, 151, 586, 935, 1169, 1237
AlwI GGATC 3 cut(s) 1182, 1195, 1322
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 7 cut(s) 242, 288, 681, 807, 827, 1644, 1712
ApeKI GCWGC 6 cut(s) 529, 661, 695, 952, 1225, 1349
ApoI RAATTY 2 cut(s) 425, 854
AspLEI GCGC 2 cut(s) 517, 973
AspS9I GGNCC 3 cut(s) 228, 289, 1712
AsuHPI GGTGA 6 cut(s) 388, 601, 921, 1004, 1292, 1697
AsuNHI GCTAGC 1 cut(s) 691
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 1 cut(s) 228
AxyI CCTNAGG 2 cut(s) 1449, 1625
BalI TGGCCA 2 cut(s) 683, 1646
BamHI GGATCC 1 cut(s) 1187
BanII GRGCYC 1 cut(s) 608
BarI GAAGNNNNNNTAC 2 cut(s) 1004, 1036
BauI CACGAG 1 cut(s) 1638
BbsI GAAGAC 2 cut(s) 12, 664
Bbv12I GWGCWC 1 cut(s) 1379
BbvI GCAGC 6 cut(s) 516, 673, 707, 939, 1237, 1336
BceAI ACGGC 1 cut(s) 1604
BciT130I CCWGG 3 cut(s) 1061, 1332, 1802
BciVI GTATCC 3 cut(s) 228, 1478, 1816
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 6 cut(s) 74, 151, 586, 935, 1169, 1237
BcuI ACTAGT 1 cut(s) 965
BfaI CTAG 3 cut(s) 692, 938, 966
BfmI CTRYAG 4 cut(s) 30, 195, 530, 1141
BfuAI ACCTGC 2 cut(s) 156, 1793
BfuI GTATCC 3 cut(s) 228, 1478, 1816
BisI GCNGC 8 cut(s) 530, 662, 665, 696, 879, 953, 1226, 1350
BlsI GCNGC 8 cut(s) 531, 663, 666, 697, 880, 954, 1227, 1351
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 3 cut(s) 1061, 1332, 1802
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 3 cut(s) 228, 289, 1712
BmiI GGNNCC 2 cut(s) 230, 1189
BmrFI CCNGG 3 cut(s) 1061, 1332, 1802
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 4 cut(s) 128, 1084, 1116, 1597
BmtI GCTAGC 1 cut(s) 695
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 12, 664
BplI GAGNNNNNCTC 6 cut(s) 908, 940, 1007, 1039, 1256, 1288
BpmI CTGGAG 3 cut(s) 324, 1353, 1461
BpuEI CTTGAG 2 cut(s) 1228, 1289
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 87, 1404, 1680
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 6 cut(s) 291, 321, 1624, 1654, 1745, 1775
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 115, 476, 943, 1012, 1352, 1626
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 2 cut(s) 590, 1478
Bse21I CCTNAGG 2 cut(s) 1449, 1625
Bse3DI GCAATG 1 cut(s) 797
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 3 cut(s) 1061, 1332, 1802
BseDI CCNNGG 3 cut(s) 87, 1404, 1680
BseGI GGATG 6 cut(s) 487, 775, 1069, 1414, 1735, 1823
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 7 cut(s) 90, 115, 476, 943, 1012, 1352, 1626
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 4 cut(s) 6, 38, 1254, 1733
BseNI ACTGG 2 cut(s) 590, 1478
BseRI GAGGAG 4 cut(s) 128, 1017, 1464, 1766
BseXI GCAGC 6 cut(s) 516, 673, 707, 939, 1237, 1336
BsgI GTGCAG 2 cut(s) 657, 680
Bsh1236I CGCG 2 cut(s) 89, 667
BshFI GGCC 7 cut(s) 244, 290, 683, 809, 829, 1646, 1714
BsiHKAI GWGCWC 1 cut(s) 1379
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 3 cut(s) 214, 699, 1353
BslI CCNNNNNNNGG 7 cut(s) 90, 115, 476, 943, 1012, 1352, 1626
BsmAI GTCTC 6 cut(s) 74, 151, 586, 935, 1169, 1237
BsmBI CGTCTC 1 cut(s) 935
BsnI GGCC 7 cut(s) 244, 290, 683, 809, 829, 1646, 1714
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 2 cut(s) 608, 1379
Bsp143I GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
BspANI GGCC 7 cut(s) 244, 290, 683, 809, 829, 1646, 1714
BspCNI CTCAG 4 cut(s) 7, 37, 1255, 1734
BspFNI CGCG 2 cut(s) 89, 667
BspHI TCATGA 2 cut(s) 40, 124
BspLI GGNNCC 2 cut(s) 230, 1189
BspMAI CTGCAG 3 cut(s) 199, 534, 1145
BspMI ACCTGC 2 cut(s) 156, 1793
BspOI GCTAGC 1 cut(s) 695
BspPI GGATC 3 cut(s) 1182, 1195, 1322
BspQI GCTCTTC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 74
BsrBI CCGCTC 2 cut(s) 715, 881
BsrDI GCAATG 1 cut(s) 797
BsrFI RCCGGY 1 cut(s) 698
BsrI ACTGG 2 cut(s) 590, 1478
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 87, 1404, 1680
BssMI GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
BssNAI GTATAC 1 cut(s) 1270
BssSI CACGAG 1 cut(s) 1638
BssT1I CCWWGG 1 cut(s) 1680
Bst1107I GTATAC 1 cut(s) 1270
Bst2BI CACGAG 1 cut(s) 1638
Bst2UI CCWGG 3 cut(s) 1061, 1332, 1802
Bst4CI ACNGT 4 cut(s) 321, 933, 946, 1674
Bst6I CTCTTC 4 cut(s) 270, 279, 731, 1541
BstAPI GCANNNNNTGC 2 cut(s) 1607, 1858
BstC8I GCNNGC 3 cut(s) 693, 1347, 1859
BstDEI CTNAG 9 cut(s) 15, 24, 731, 1263, 1449, 1568, 1625, 1703, 1742
BstDSI CCRYGG 1 cut(s) 87
BstEII GGTNACC 1 cut(s) 1298
BstF5I GGATG 6 cut(s) 487, 775, 1069, 1414, 1735, 1823
BstFNI CGCG 2 cut(s) 89, 667
BstHHI GCGC 2 cut(s) 517, 973
BstKTI GATC 5 cut(s) 757, 1190, 1330, 1465, 1702
BstMAI GTCTC 6 cut(s) 74, 151, 586, 935, 1169, 1237
BstMBI GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
BstMWI GCNNNNNNNGC 5 cut(s) 86, 277, 1607, 1616, 1858
BstNI CCWGG 3 cut(s) 1061, 1332, 1802
BstNSI RCATGY 1 cut(s) 990
BstPI GGTNACC 1 cut(s) 1298
BstSCI CCNGG 3 cut(s) 1059, 1330, 1800
BstSFI CTRYAG 4 cut(s) 30, 195, 530, 1141
BstUI CGCG 2 cut(s) 89, 667
BstV1I GCAGC 6 cut(s) 516, 673, 707, 939, 1237, 1336
BstV2I GAAGAC 2 cut(s) 12, 664
BstX2I RGATCY 1 cut(s) 1187
BstYI RGATCY 1 cut(s) 1187
BstZ17I GTATAC 1 cut(s) 1270
Bsu36I CCTNAGG 2 cut(s) 1449, 1625
BsuI GTATCC 3 cut(s) 228, 1478, 1816
BsuRI GGCC 7 cut(s) 244, 290, 683, 809, 829, 1646, 1714
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 2 cut(s) 1056, 1803
BtsCI GGATG 6 cut(s) 487, 775, 1069, 1414, 1735, 1823
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 317
BveI ACCTGC 2 cut(s) 156, 1793
Cac8I GCNNGC 3 cut(s) 693, 1347, 1859
CaiI CAGNNNCTG 1 cut(s) 538
CciI TCATGA 2 cut(s) 40, 124
CfoI GCGC 2 cut(s) 517, 973
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 3 cut(s) 228, 289, 1712
Cfr42I CCGCGG 1 cut(s) 90
Csp6I GTAC 4 cut(s) 190, 266, 702, 1021
CviQI GTAC 4 cut(s) 190, 266, 702, 1021
DdeI CTNAG 9 cut(s) 15, 24, 731, 1263, 1449, 1568, 1625, 1703, 1742
DpnI GATC 5 cut(s) 756, 1189, 1329, 1464, 1701
DpnII GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
EaeI YGGCCR 2 cut(s) 681, 1644
Eam1104I CTCTTC 4 cut(s) 270, 279, 731, 1541
EarI CTCTTC 4 cut(s) 270, 279, 731, 1541
EciI GGCGGA 1 cut(s) 1645
Eco130I CCWWGG 1 cut(s) 1680
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 228
Eco81I CCTNAGG 2 cut(s) 1449, 1625
Eco88I CYCGRG 1 cut(s) 1166
Eco91I GGTNACC 1 cut(s) 1298
EcoO109I RGGNCCY 2 cut(s) 228, 289
EcoO65I GGTNACC 1 cut(s) 1298
EcoRII CCWGG 3 cut(s) 1059, 1330, 1800
EcoT14I CCWWGG 1 cut(s) 1680
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 1680
Esp3I CGTCTC 1 cut(s) 935
FalI AAGNNNNNCTT 6 cut(s) 276, 308, 535, 567, 1478, 1510
FauI CCCGC 3 cut(s) 82, 229, 778
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 1269
Fnu4HI GCNGC 8 cut(s) 530, 662, 665, 696, 879, 953, 1226, 1350
FokI GGATG 6 cut(s) 494, 782, 1076, 1421, 1742, 1810
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 8 cut(s) 530, 662, 665, 696, 879, 953, 1226, 1350
FspBI CTAG 3 cut(s) 692, 938, 966
FspI TGCGCA 1 cut(s) 972
GlaI GCGC 2 cut(s) 516, 972
GluI GCNGC 8 cut(s) 530, 662, 665, 696, 879, 953, 1226, 1350
GsuI CTGGAG 3 cut(s) 324, 1353, 1461
HaeIII GGCC 7 cut(s) 244, 290, 683, 809, 829, 1646, 1714
HapII CCGG 3 cut(s) 214, 699, 1353
HhaI GCGC 2 cut(s) 517, 973
Hin6I GCGC 2 cut(s) 515, 971
HinP1I GCGC 2 cut(s) 515, 971
HincII GTYRAC 1 cut(s) 1723
HindII GTYRAC 1 cut(s) 1723
HinfI GANTC 7 cut(s) 17, 388, 465, 535, 557, 669, 1760
HpaII CCGG 3 cut(s) 214, 699, 1353
HphI GGTGA 6 cut(s) 388, 601, 921, 1004, 1292, 1697
Hpy166II GTNNAC 6 cut(s) 1091, 1270, 1435, 1664, 1670, 1723
Hpy188I TCNGA 9 cut(s) 16, 540, 759, 800, 866, 1125, 1159, 1405, 1765
Hpy188III TCNNGA 8 cut(s) 41, 125, 392, 496, 892, 1168, 1207, 1486
Hpy8I GTNNAC 6 cut(s) 1091, 1270, 1435, 1664, 1670, 1723
Hpy99I CGWCG 1 cut(s) 1678
HpyCH4III ACNGT 4 cut(s) 321, 933, 946, 1674
HpyCH4IV ACGT 1 cut(s) 1666
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 277, 1607, 1616, 1858
HpyF3I CTNAG 9 cut(s) 15, 24, 731, 1263, 1449, 1568, 1625, 1703, 1742
HpySE526I ACGT 1 cut(s) 1666
HspAI GCGC 2 cut(s) 515, 971
Ksp22I TGATCA 1 cut(s) 754
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 6 cut(s) 516, 673, 707, 939, 1237, 1336
LweI GCATC 4 cut(s) 128, 1084, 1116, 1597
MaeI CTAG 3 cut(s) 692, 938, 966
MaeII ACGT 1 cut(s) 1666
MaeIII GTNAC 3 cut(s) 581, 920, 1298
MalI GATC 5 cut(s) 756, 1189, 1329, 1464, 1701
MbiI CCGCTC 2 cut(s) 715, 881
MboI GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
MflI RGATCY 1 cut(s) 1187
MhlI GDGCHC 2 cut(s) 608, 1379
MlsI TGGCCA 2 cut(s) 683, 1646
MluCI AATT 4 cut(s) 425, 854, 859, 1046
MluNI TGGCCA 2 cut(s) 683, 1646
MlyI GAGTC 4 cut(s) 26, 397, 678, 1769
MmeI TCCRAC 1 cut(s) 1165
Mox20I TGGCCA 2 cut(s) 683, 1646
MscI TGGCCA 2 cut(s) 683, 1646
MseI TTAA 6 cut(s) 627, 1038, 1248, 1503, 1587, 1835
Msp20I TGGCCA 2 cut(s) 683, 1646
MspA1I CMGCKG 3 cut(s) 89, 1228, 1349
MspI CCGG 3 cut(s) 214, 699, 1353
MspR9I CCNGG 3 cut(s) 1061, 1332, 1802
MvaI CCWGG 3 cut(s) 1061, 1332, 1802
MvnI CGCG 2 cut(s) 89, 667
MwoI GCNNNNNNNGC 5 cut(s) 86, 277, 1607, 1616, 1858
NdeI CATATG 1 cut(s) 161
NdeII GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
NheI GCTAGC 1 cut(s) 691
NlaIV GGNNCC 2 cut(s) 230, 1189
NmuCI GTSAC 1 cut(s) 1298
NsbI TGCGCA 1 cut(s) 972
NspI RCATGY 1 cut(s) 990
PagI TCATGA 2 cut(s) 40, 124
PceI AGGCCT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 465, 535, 557
PfoI TCCNGGA 1 cut(s) 1330
PkrI GCNGC 8 cut(s) 531, 663, 666, 697, 880, 954, 1227, 1351
PleI GAGTC 4 cut(s) 25, 396, 677, 1768
PpsI GAGTC 4 cut(s) 25, 396, 677, 1768
PpuMI RGGWCCY 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 1059, 1330, 1800
PspEI GGTNACC 1 cut(s) 1298
PspGI CCWGG 3 cut(s) 1059, 1330, 1800
PspN4I GGNNCC 2 cut(s) 230, 1189
PspPI GGNCC 3 cut(s) 228, 289, 1712
PspPPI RGGWCCY 1 cut(s) 228
PstI CTGCAG 3 cut(s) 199, 534, 1145
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 1187
PvuII CAGCTG 1 cut(s) 1349
RsaI GTAC 4 cut(s) 191, 267, 703, 1022
RsaNI GTAC 4 cut(s) 190, 266, 702, 1021
SacII CCGCGG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 6 cut(s) 627, 1038, 1248, 1503, 1587, 1835
SatI GCNGC 8 cut(s) 530, 662, 665, 696, 879, 953, 1226, 1350
Sau3AI GATC 5 cut(s) 754, 1187, 1327, 1462, 1699
Sau96I GGNCC 3 cut(s) 228, 289, 1712
SbfI CCTGCAGG 1 cut(s) 1145
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 4 cut(s) 26, 397, 678, 1769
ScrFI CCNGG 3 cut(s) 1061, 1332, 1802
SdaI CCTGCAGG 1 cut(s) 1145
SduI GDGCHC 2 cut(s) 608, 1379
SfaNI GCATC 4 cut(s) 128, 1084, 1116, 1597
SfcI CTRYAG 4 cut(s) 30, 195, 530, 1141
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 1207, 1304
SmoI CTYRAG 2 cut(s) 1207, 1304
SpeI ACTAGT 1 cut(s) 965
Sse8387I CCTGCAGG 1 cut(s) 1145
Sse9I AATT 4 cut(s) 425, 854, 859, 1046
SseBI AGGCCT 1 cut(s) 829
SspI AATATT 1 cut(s) 457
SspMI CTAG 3 cut(s) 692, 938, 966
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 3 cut(s) 1059, 1330, 1800
StyI CCWWGG 1 cut(s) 1680
TaaI ACNGT 4 cut(s) 321, 933, 946, 1674
TaiI ACGT 1 cut(s) 1669
TaqI TCGA 3 cut(s) 608, 1274, 1520
TasI AATT 4 cut(s) 425, 854, 859, 1046
TatI WGTACW 1 cut(s) 1020
TauI GCSGC 2 cut(s) 667, 881
TfiI GAWTC 3 cut(s) 465, 535, 557
Tru1I TTAA 6 cut(s) 627, 1038, 1248, 1503, 1587, 1835
Tru9I TTAA 6 cut(s) 627, 1038, 1248, 1503, 1587, 1835
TscAI CASTG 2 cut(s) 204, 324
TseFI GTSAC 1 cut(s) 1298
TseI GCWGC 6 cut(s) 529, 661, 695, 952, 1225, 1349
Tsp45I GTSAC 1 cut(s) 1298
TspDTI ATGAA 4 cut(s) 29, 148, 397, 1667
TspGWI ACGGA 2 cut(s) 563, 630
TspRI CASTG 2 cut(s) 204, 324
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 2 cut(s) 425, 854
XceI RCATGY 1 cut(s) 990
XmiI GTMKAC 1 cut(s) 1269
XspI CTAG 3 cut(s) 692, 938, 966
ZrmI AGTACT 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.