Rroxscaffold_1G00017990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000153
Physical Location & Seq
Forward (+)
22056478 .. 22057146
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017990.1

Sequence Viewer

Length: 474 bp
ATGGCTCAAGCGTACGAGTCTTCTCAACCTATTGAACTTTGTGACCACCACTTTTCTCTGGAGGATGGTCTCGTTCCTACTTCCACCGCGAGGAGTTGTGAAGGTAGCTCGGAGGAGGCATCTCGTGAATTTTCCGGGCACTTTGTTTCTCCCAAGTTCATATCTAGGTTGCTTATTGAGAGGGAGAGTACCCTGCGGTGCCTACATGTTTCCGTATCCTGCGAGAACCACTTTGCGGGTTGGCCGAATGGGTCAGCTTTGAGGTTTATAAAGATGACATTTGCCTTCGCCATGTGGTGCGAAGATGGAGCCCTGAAACTCACACGTTTATCTGTTCTTGGGGGAATTTACTCCTTCTCCGGAAGATGTCTGCAATATTATGAGAATCCCGATCATTGGAGATGGGCTCGACGGATGGAGGCAAGTTTAAGCATGGTGCAGGCTTTGAATCGGCTGTCGGGTGGAGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

6.37

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 359
AciI CCGC 3 cut(s) 87, 196, 236
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 2 cut(s) 128, 345
AfaI GTAC 2 cut(s) 14, 190
AfiI CCNNNNNNNGG 3 cut(s) 90, 235, 396
AflIII ACRYGT 2 cut(s) 205, 323
AgsI TTSAA 2 cut(s) 35, 448
AluBI AGCT 2 cut(s) 108, 257
AluI AGCT 2 cut(s) 108, 257
Alw26I GTCTC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 2 cut(s) 242, 466
ApoI RAATTY 2 cut(s) 128, 345
AsuC2I CCSGG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 2 cut(s) 313, 409
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 4 cut(s) 59, 299, 396, 409
BciVI GTATCC 1 cut(s) 226
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 200, 310
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 235, 396
BseAI TCCGGA 1 cut(s) 359
BseGI GGATG 2 cut(s) 70, 420
BseLI CCNNNNNNNGG 3 cut(s) 90, 235, 396
BseRI GAGGAG 2 cut(s) 106, 128
BseSI GKGCMC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 244, 468
BshNI GGYRCC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 135, 360
BsiWI CGTACG 1 cut(s) 12
BslI CCNNNNNNNGG 3 cut(s) 90, 235, 396
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 244, 468
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 141, 313, 409
Bsp13I TCCGGA 1 cut(s) 359
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 3 cut(s) 87, 196, 236
BspANI GGCC 2 cut(s) 244, 468
BspEI TCCGGA 1 cut(s) 359
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 200, 310
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 74
BssMI GATC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 441
BstF5I GGATG 2 cut(s) 70, 420
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 244, 468
BtsCI GGATG 2 cut(s) 70, 420
Cac8I GCNNGC 1 cut(s) 441
Csp6I GTAC 2 cut(s) 13, 189
CviAII CATG 3 cut(s) 206, 292, 433
CviJI RGCY 9 cut(s) 5, 108, 244, 257, 311, 407, 443, 454, 468
CviKI_1 RGCY 9 cut(s) 5, 108, 244, 257, 311, 407, 443, 454, 468
CviQI GTAC 2 cut(s) 13, 189
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 313, 409
Eco31I GGTCTC 1 cut(s) 74
EcoT38I GRGCYC 2 cut(s) 313, 409
FaeI CATG 3 cut(s) 209, 295, 436
FaiI YATR 6 cut(s) 161, 207, 269, 293, 381, 434
FatI CATG 3 cut(s) 205, 291, 432
FauI CCCGC 1 cut(s) 229
FokI GGATG 2 cut(s) 77, 427
FriOI GRGCYC 2 cut(s) 313, 409
FspBI CTAG 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 2 cut(s) 244, 468
HapII CCGG 2 cut(s) 135, 360
Hin1II CATG 3 cut(s) 209, 295, 436
HinfI GANTC 3 cut(s) 17, 385, 448
HpaII CCGG 2 cut(s) 135, 360
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 4 cut(s) 59, 125, 360, 389
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 95, 295, 364
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 373, 439
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 209, 295, 436
Kpn2I TCCGGA 1 cut(s) 359
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 44, 148, 206, 232, 326, 373, 425
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 3 cut(s) 12, 314, 375
MhlI GDGCHC 3 cut(s) 141, 313, 409
MluCI AATT 2 cut(s) 128, 345
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 8 cut(s) 55, 84, 106, 109, 174, 255, 412, 458
MroI TCCGGA 1 cut(s) 359
MseI TTAA 1 cut(s) 428
MspI CCGG 2 cut(s) 135, 360
MspR9I CCNGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 89
NciI CCSGG 1 cut(s) 136
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 209, 295, 436
NlaIV GGNNCC 2 cut(s) 200, 310
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PfeI GAWTC 2 cut(s) 385, 448
Pfl23II CGTACG 1 cut(s) 12
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PscI ACATGT 1 cut(s) 205
PsiI TTATAA 1 cut(s) 269
PspLI CGTACG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 200, 310
RsaI GTAC 2 cut(s) 14, 190
RsaNI GTAC 2 cut(s) 13, 189
SaqAI TTAA 1 cut(s) 428
Sau3AI GATC 1 cut(s) 391
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 3 cut(s) 141, 313, 409
SetI ASST 7 cut(s) 31, 106, 110, 170, 259, 266, 328
SfaNI GCATC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 128, 345
SsiI CCGC 3 cut(s) 87, 196, 236
SspI AATATT 1 cut(s) 377
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 134
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 409
TasI AATT 2 cut(s) 128, 345
TfiI GAWTC 2 cut(s) 385, 448
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 2 cut(s) 202, 427
XapI RAATTY 2 cut(s) 128, 345
XceI RCATGY 1 cut(s) 209
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.