Rmu_sc0013359.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013359.1
OG0000153
Physical Location & Seq
Forward (+)
1 .. 687
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013359.1_g000001.1.cds

Sequence Viewer

Length: 545 bp
cagggattgataaggtgactgtcattcagactcaaagccttggcccaagcttgcctgctaaagggtcaaccagtgagtgggtgacccatatgaacaactttatgattcgatttgcttctaaagaggagtctgctctaagcatggctgacgttgcaccagtattgagcggagacaccgctgtttttgcgggtatgaaaattccttcagagttagccggtcccttggctagatttgctgagagatatagcggtggagatatctttaacttaattgatcgagactatacttcaaggaagaagtgtgcacaacacttctttggttatatgataaggcctgaaggatcaaagaaccagtgtgttaaaattcgtggtctgcaagagatggtttcacaatccaagaaggagcttgcacgtcttgagggagagttgcgcaaggctcaagatgatttgaatttcagtttgcgtaatgttcccatgcttgctatggagtgtgtactggaatcttctaggaatgatgacagttgcttctttcattatctgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.13

Weight (kDa)

7.01

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 167
AciI CCGC 4 cut(s) 167, 176, 187, 248
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 3 cut(s) 197, 362, 450
AcuI CTGAAG 2 cut(s) 188, 356
AfaI GTAC 2 cut(s) 494, 541
AfiI CCNNNNNNNGG 2 cut(s) 61, 77
AgsI TTSAA 2 cut(s) 290, 450
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 50, 405
AluI AGCT 2 cut(s) 50, 405
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 164, 272
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 1 cut(s) 348
AoxI GGCC 2 cut(s) 42, 331
ApaLI GTGCAC 1 cut(s) 302
ApoI RAATTY 3 cut(s) 197, 362, 450
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 2 cut(s) 43, 217
AsuHPI GGTGA 2 cut(s) 27, 93
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 164, 272
BfaI CTAG 3 cut(s) 227, 506, 543
Bme18I GGWCC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 43, 217
BmiI GGNNCC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 422, 436
BsaJI CCNNGG 2 cut(s) 39, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 77
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 4 cut(s) 71, 157, 351, 500
BseDI CCNNGG 2 cut(s) 39, 221
BseLI CCNNNNNNNGG 2 cut(s) 61, 77
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 4 cut(s) 71, 157, 351, 500
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 306
BshFI GGCC 2 cut(s) 44, 333
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 61, 77
BsmAI GTCTC 2 cut(s) 164, 272
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 44, 333
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 273, 340
BspACI CCGC 4 cut(s) 167, 176, 187, 248
BspANI GGCC 2 cut(s) 44, 333
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 4 cut(s) 71, 157, 351, 500
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 39, 221
BssMI GATC 2 cut(s) 273, 340
BssT1I CCWWGG 2 cut(s) 39, 221
Bst4CI ACNGT 2 cut(s) 21, 520
BstC8I GCNNGC 4 cut(s) 52, 56, 407, 479
BstDEI CTNAG 2 cut(s) 136, 236
BstEII GGTNACC 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 2 cut(s) 276, 343
BstMAI GTCTC 2 cut(s) 164, 272
BstMBI GATC 2 cut(s) 273, 340
BstMWI GCNNNNNNNGC 3 cut(s) 151, 184, 232
BstPI GGTNACC 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 44, 333
BtrI CACGTC 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 78, 358
Cac8I GCNNGC 4 cut(s) 52, 56, 407, 479
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 43, 217
Csp6I GTAC 2 cut(s) 493, 540
CviAII CATG 2 cut(s) 141, 474
CviJI RGCY 9 cut(s) 38, 44, 50, 145, 214, 226, 333, 405, 436
CviKI_1 RGCY 9 cut(s) 38, 44, 50, 145, 214, 226, 333, 405, 436
CviQI GTAC 2 cut(s) 493, 540
DdeI CTNAG 2 cut(s) 136, 236
DpnI GATC 2 cut(s) 275, 342
DpnII GATC 2 cut(s) 273, 340
Eco130I CCWWGG 2 cut(s) 39, 221
Eco147I AGGCCT 1 cut(s) 333
Eco32I GATATC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 188, 356
Eco91I GGTNACC 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 81
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 39, 221
ErhI CCWWGG 2 cut(s) 39, 221
FaeI CATG 2 cut(s) 144, 477
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 140, 473
FauI CCCGC 1 cut(s) 180
FauNDI CATATG 1 cut(s) 89
FspBI CTAG 3 cut(s) 227, 506, 543
FspI TGCGCA 1 cut(s) 430
GlaI GCGC 1 cut(s) 430
HaeIII GGCC 2 cut(s) 44, 333
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 431
Hin1II CATG 2 cut(s) 144, 477
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 4 cut(s) 30, 105, 127, 499
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 27, 93
Hpy166II GTNNAC 3 cut(s) 68, 304, 493
Hpy188I TCNGA 2 cut(s) 29, 207
Hpy188III TCNNGA 3 cut(s) 277, 415, 439
Hpy8I GTNNAC 3 cut(s) 68, 304, 493
HpyAV CCTTC 3 cut(s) 212, 331, 393
HpyCH4III ACNGT 2 cut(s) 21, 520
HpyCH4IV ACGT 2 cut(s) 149, 411
HpyCH4V TGCA 4 cut(s) 154, 304, 375, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 184, 232
HpyF3I CTNAG 2 cut(s) 136, 236
HpySE526I ACGT 2 cut(s) 149, 411
Hsp92II CATG 2 cut(s) 144, 477
HspAI GCGC 1 cut(s) 429
Kzo9I GATC 2 cut(s) 273, 340
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 7 cut(s) 68, 84, 170, 228, 347, 364, 481
MaeI CTAG 3 cut(s) 227, 506, 543
MaeII ACGT 2 cut(s) 149, 411
MaeIII GTNAC 2 cut(s) 15, 81
MalI GATC 2 cut(s) 275, 342
MbiI CCGCTC 1 cut(s) 167
MboI GATC 2 cut(s) 273, 340
MboII GAAGA 2 cut(s) 306, 494
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 4 cut(s) 197, 269, 362, 450
MlyI GAGTC 2 cut(s) 24, 136
MnlI CCTC 2 cut(s) 117, 411
MseI TTAA 3 cut(s) 263, 268, 359
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 151, 184, 232
NdeI CATATG 1 cut(s) 89
NdeII GATC 2 cut(s) 273, 340
NlaIII CATG 2 cut(s) 144, 477
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 15, 81
NsbI TGCGCA 1 cut(s) 430
PceI AGGCCT 1 cut(s) 333
PfeI GAWTC 2 cut(s) 105, 499
PflMI CCANNNNNTGG 1 cut(s) 77
PleI GAGTC 2 cut(s) 24, 135
PpsI GAGTC 2 cut(s) 24, 135
PspEI GGTNACC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 43, 217
RsaI GTAC 2 cut(s) 494, 541
RsaNI GTAC 2 cut(s) 493, 540
SaqAI TTAA 3 cut(s) 263, 268, 359
Sau3AI GATC 2 cut(s) 273, 340
Sau96I GGNCC 2 cut(s) 43, 217
SchI GAGTC 2 cut(s) 24, 136
SduI GDGCHC 1 cut(s) 306
SetI ASST 5 cut(s) 17, 52, 152, 407, 414
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 415, 437
SmoI CTYRAG 2 cut(s) 415, 437
Sse9I AATT 4 cut(s) 197, 269, 362, 450
SseBI AGGCCT 1 cut(s) 333
SsiI CCGC 4 cut(s) 167, 176, 187, 248
SspMI CTAG 3 cut(s) 227, 506, 543
StuI AGGCCT 1 cut(s) 333
StyI CCWWGG 2 cut(s) 39, 221
TaaI ACNGT 2 cut(s) 21, 520
TaiI ACGT 2 cut(s) 152, 414
TaqI TCGA 2 cut(s) 108, 276
TasI AATT 4 cut(s) 197, 269, 362, 450
TatI WGTACW 2 cut(s) 492, 539
TfiI GAWTC 2 cut(s) 105, 499
Tru1I TTAA 3 cut(s) 263, 268, 359
Tru9I TTAA 3 cut(s) 263, 268, 359
TscAI CASTG 2 cut(s) 78, 358
TseFI GTSAC 2 cut(s) 15, 81
Tsp45I GTSAC 2 cut(s) 15, 81
TspDTI ATGAA 3 cut(s) 106, 208, 520
TspRI CASTG 2 cut(s) 78, 358
Van91I CCANNNNNTGG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 217
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 3 cut(s) 197, 362, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XspI CTAG 3 cut(s) 227, 506, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.