Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000153

Physical Location & Seq

Genomic Coordinates Reverse (-)

18643915 .. 18648437

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGGAAATTCAATTTCAGACCATATTTCGCCGCTCATGGCTTCCAGACATTTCCTTTCTTTTACCCAGAGGGTAACTCATCACAGTTCCTAGAGCCGGTTGAGCTGCTTCTAACCACTAGTGCGCAGTCCATAATAGCATGTGGTGATTTCTTTGACCCCGTGATGGAGAAGTACTCTCCTGACAGAGTTAAGAGGCAATTTGGCATAGACCAGGATGTGCCATCACATCTATCCTATGGTGGACATCGTGGGGATTGCATCATGGGTTTCACTCGGACAGATGGTATTTCCTGCAGGGGTATGCTCTCTGATAGTCTCGGGAAGAAAGGCTGTGTTGGATCCCCTACATCAACATTCTTGAGGTTTTGGGAGTTACAGCGGTGCGAGTTTAGGAGGTTTATTCAAACTGGTGGGAGTAGGTTGCGTCCGAAAGCCACTAGTGAGAACAAGAGACTACTCCACAGTAGCACTGTCATAGGTGTCATGTCTAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTATAAAGCGTGTGGTTGGTCACCTCAAGGGTGGTAAAAGTGGAGATGATCCTGAAGTAGAGTTGCCAGCTGCCGGAGTGGAGAAAGGTAGCAAGAGCACTACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGAGGGGAAGGCAGAAGGGAGGTTTGCTGCTTCAAACCTAAGGTAGCCAAAGATCGTATCCCTCCTCCAGTAGTCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATCGAGTTCGGCTTGTGAAAAAGGGAAGAAGAGGAAAGCTGCTTCTACCCTGAGACCAAGTGGGGTTATTAAGAGGAAGGTTGTAGATGATGCCTCACCTGCCGTCCTTAGGCGGAGTTCTAGTGTGGCCAACATGAACTTTTGTAAACGTAAACCGTCGTCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGTGTTGACGGGGATGGTAGCCCCCTGAGTGATGAGGAAAATGAGTCTGATACTTATGAGGGAAAGACATGCGATGGTGGTAGCCAGGGTAATCCAACTGTAGCTTCGATGGGAGAGGATAGCTGCGGTGATAACCAACTTTCGCATAAGAGGAAGGTGACAGTTCAGGAGTTCAAGGGGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTCCCTACTTCTAAAGGTGGAGTATTATTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C PC4

Protein Analysis

409

Amino Acids

44.52

Weight (kDa)

9.26

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	55 - 78	3.7e-06	Plant mobile domain
PC4	PF02229	368 - 404	1.4e-12	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis	RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata	RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora	Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa	Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha	Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana	Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	874
Acc16I	TGCGCA	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	874
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	4 cut(s)	33, 382, 880, 1092
AclWI	GGATC	3 cut(s)	336, 349, 572
AcoI	YGGCCR	1 cut(s)	894
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	97, 166, 602, 876
AgsI	TTSAA	4 cut(s)	13, 407, 694, 1141
AhlI	ACTAGT	2 cut(s)	119, 440
AjnI	CCWGG	2 cut(s)	213, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1054, 1086
AluBI	AGCT	6 cut(s)	106, 599, 806, 1070, 1089, 1195
AluI	AGCT	6 cut(s)	106, 599, 806, 1070, 1089, 1195
Alw21I	GWGCWC	2 cut(s)	629, 1197
Alw26I	GTCTC	3 cut(s)	323, 448, 814
AlwI	GGATC	3 cut(s)	336, 349, 572
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	894, 962
ApeKI	GCWGC	5 cut(s)	106, 599, 687, 806, 1089
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	6 cut(s)	158, 542, 855, 947, 1106, 1135
AvaI	CYCGRG	1 cut(s)	320
AxyI	CCTNAGG	2 cut(s)	699, 875
BalI	TGGCCA	1 cut(s)	896
BamHI	GGATCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	1197
Bbv12I	GWGCWC	2 cut(s)	629, 1197
BbvI	GCAGC	5 cut(s)	93, 586, 674, 793, 1076
BccI	CCATC	9 cut(s)	160, 232, 278, 653, 775, 953, 974, 1034, 1069
BceAI	ACGGC	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	215, 1052
BciVI	GTATCC	1 cut(s)	728
BcoDI	GTCTC	3 cut(s)	323, 448, 814
BcuI	ACTAGT	2 cut(s)	119, 440
BfaI	CTAG	5 cut(s)	92, 120, 441, 492, 888
BfmI	CTRYAG	2 cut(s)	295, 1065
BfuAI	ACCTGC	1 cut(s)	874
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	6 cut(s)	33, 107, 600, 688, 807, 1090
BlsI	GCNGC	6 cut(s)	34, 108, 601, 689, 808, 1091
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	215, 1052
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	215, 1052
BmsI	GCATC	2 cut(s)	270, 847
BplI	GAGNNNNNCTC	6 cut(s)	62, 94, 161, 193, 506, 538
BpmI	CTGGAG	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	382, 539
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	3 cut(s)	654, 930, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 166, 602, 876
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	415, 728
Bse21I	CCTNAGG	2 cut(s)	699, 875
BseBI	CCWGG	2 cut(s)	215, 1052
BseDI	CCNNGG	3 cut(s)	654, 930, 1051
BseGI	GGATG	3 cut(s)	223, 664, 985
BseLI	CCNNNNNNNGG	4 cut(s)	97, 166, 602, 876
BseMII	CTCAG	3 cut(s)	504, 809, 983
BseNI	ACTGG	2 cut(s)	415, 728
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	5 cut(s)	93, 586, 674, 793, 1076
BshFI	GGCC	2 cut(s)	896, 964
BsiHKAI	GWGCWC	2 cut(s)	629, 1197
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	98, 603
BslI	CCNNNNNNNGG	4 cut(s)	97, 166, 602, 876
BsmAI	GTCTC	3 cut(s)	323, 448, 814
BsnI	GGCC	2 cut(s)	896, 964
Bso31I	GGTCTC	1 cut(s)	814
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	629, 1197
Bsp143I	GATC	4 cut(s)	341, 577, 712, 949
BspACI	CCGC	4 cut(s)	33, 382, 880, 1092
BspANI	GGCC	2 cut(s)	896, 964
BspCNI	CTCAG	3 cut(s)	505, 810, 984
BspLI	GGNNCC	1 cut(s)	343
BspMAI	CTGCAG	1 cut(s)	299
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	3 cut(s)	336, 349, 572
BspTNI	GGTCTC	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	415, 728
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	654, 930, 1051
BssMI	GATC	4 cut(s)	341, 577, 712, 949
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	930
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	215, 1052
Bst4CI	ACNGT	6 cut(s)	87, 467, 475, 924, 1066, 1129
Bst6I	CTCTTC	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	6 cut(s)	513, 699, 818, 875, 953, 992
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	223, 664, 985
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	4 cut(s)	344, 580, 715, 952
BstMAI	GTCTC	3 cut(s)	323, 448, 814
BstMBI	GATC	4 cut(s)	341, 577, 712, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 866
BstNI	CCWGG	2 cut(s)	215, 1052
BstNSI	RCATGY	2 cut(s)	144, 1038
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	213, 1050
BstSFI	CTRYAG	2 cut(s)	295, 1065
BstV1I	GCAGC	5 cut(s)	93, 586, 674, 793, 1076
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BstZ17I	GTATAC	1 cut(s)	520
Bsu36I	CCTNAGG	2 cut(s)	699, 875
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	896, 964
BtgZI	GCGATG	1 cut(s)	1053
BtsCI	GGATG	3 cut(s)	223, 664, 985
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	962
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	6 cut(s)	38, 141, 265, 487, 901, 1035
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	6 cut(s)	513, 699, 818, 875, 953, 992
DpnI	GATC	4 cut(s)	343, 579, 714, 951
DpnII	GATC	4 cut(s)	341, 577, 712, 949
EaeI	YGGCCR	1 cut(s)	894
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
EciI	GGCGGA	1 cut(s)	895
Ecl136II	GAGCTC	1 cut(s)	1195
Eco130I	CCWWGG	1 cut(s)	930
Eco24I	GRGCYC	1 cut(s)	1197
Eco31I	GGTCTC	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	1195
Eco57I	CTGAAG	1 cut(s)	603
Eco81I	CCTNAGG	2 cut(s)	699, 875
Eco88I	CYCGRG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	1195
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	213, 1050
EcoT14I	CCWWGG	1 cut(s)	930
EcoT38I	GRGCYC	1 cut(s)	1197
ErhI	CCWWGG	1 cut(s)	930
FaeI	CATG	6 cut(s)	41, 144, 268, 490, 904, 1038
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FatI	CATG	6 cut(s)	37, 140, 264, 486, 900, 1034
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	6 cut(s)	33, 107, 600, 688, 807, 1090
FokI	GGATG	3 cut(s)	230, 671, 992
FriOI	GRGCYC	1 cut(s)	1197
Fsp4HI	GCNGC	6 cut(s)	33, 107, 600, 688, 807, 1090
FspBI	CTAG	5 cut(s)	92, 120, 441, 492, 888
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	6 cut(s)	33, 107, 600, 688, 807, 1090
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	896, 964
HapII	CCGG	2 cut(s)	98, 603
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	6 cut(s)	41, 144, 268, 490, 904, 1038
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	1 cut(s)	1010
HpaII	CCGG	2 cut(s)	98, 603
HphI	GGTGA	6 cut(s)	158, 542, 855, 947, 1106, 1135
Hpy166II	GTNNAC	5 cut(s)	245, 520, 914, 920, 973
Hpy188I	TCNGA	6 cut(s)	20, 279, 313, 432, 655, 1015
Hpy188III	TCNNGA	8 cut(s)	46, 182, 322, 361, 492, 581, 736, 1133
Hpy8I	GTNNAC	5 cut(s)	245, 520, 914, 920, 973
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	6 cut(s)	512, 662, 669, 838, 1114, 1178
HpyCH4III	ACNGT	6 cut(s)	87, 467, 475, 924, 1066, 1129
HpyCH4IV	ACGT	1 cut(s)	916
HpyCH4V	TGCA	2 cut(s)	261, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 866
HpyF3I	CTNAG	6 cut(s)	513, 699, 818, 875, 953, 992
HpySE526I	ACGT	1 cut(s)	916
Hsp92II	CATG	6 cut(s)	41, 144, 268, 490, 904, 1038
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	341, 577, 712, 949
LmnI	GCTCC	2 cut(s)	1192, 1200
Lsp1109I	GCAGC	5 cut(s)	93, 586, 674, 793, 1076
LweI	GCATC	2 cut(s)	270, 847
MaeI	CTAG	5 cut(s)	92, 120, 441, 492, 888
MaeII	ACGT	1 cut(s)	916
MaeIII	GTNAC	4 cut(s)	74, 375, 548, 1123
MalI	GATC	4 cut(s)	343, 579, 714, 951
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	4 cut(s)	341, 577, 712, 949
MboII	GAAGA	3 cut(s)	337, 805, 808
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	629, 1197
MlsI	TGGCCA	1 cut(s)	896
MluCI	AATT	3 cut(s)	8, 13, 200
MluNI	TGGCCA	1 cut(s)	896
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	2 cut(s)	319, 1085
Mox20I	TGGCCA	1 cut(s)	896
MscI	TGGCCA	1 cut(s)	896
MseI	TTAA	4 cut(s)	192, 498, 753, 837
Msp20I	TGGCCA	1 cut(s)	896
MspA1I	CMGCKG	2 cut(s)	382, 599
MspI	CCGG	2 cut(s)	98, 603
MspR9I	CCNGG	2 cut(s)	215, 1052
MvaI	CCWGG	2 cut(s)	215, 1052
MwoI	GCNNNNNNNGC	2 cut(s)	103, 866
NdeII	GATC	4 cut(s)	341, 577, 712, 949
NlaIII	CATG	6 cut(s)	41, 144, 268, 490, 904, 1038
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	548, 1123
NsbI	TGCGCA	1 cut(s)	126
NspI	RCATGY	2 cut(s)	144, 1038
PaqCI	CACCTGC	1 cut(s)	874
PkrI	GCNGC	6 cut(s)	34, 108, 601, 689, 808, 1091
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
Psp124BI	GAGCTC	1 cut(s)	1197
Psp6I	CCWGG	2 cut(s)	213, 1050
PspEI	GGTNACC	1 cut(s)	548
PspGI	CCWGG	2 cut(s)	213, 1050
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	1197
SaqAI	TTAA	4 cut(s)	192, 498, 753, 837
SatI	GCNGC	6 cut(s)	33, 107, 600, 688, 807, 1090
Sau3AI	GATC	4 cut(s)	341, 577, 712, 949
Sau96I	GGNCC	1 cut(s)	962
SbfI	CCTGCAGG	1 cut(s)	299
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	2 cut(s)	215, 1052
SdaI	CCTGCAGG	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	629, 1197
SfaNI	GCATC	2 cut(s)	270, 847
SfcI	CTRYAG	2 cut(s)	295, 1065
SmlI	CTYRAG	2 cut(s)	361, 554
SmoI	CTYRAG	2 cut(s)	361, 554
SpeI	ACTAGT	2 cut(s)	119, 440
Sse8387I	CCTGCAGG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	8, 13, 200
SsiI	CCGC	4 cut(s)	33, 382, 880, 1092
SspMI	CTAG	5 cut(s)	92, 120, 441, 492, 888
SstI	GAGCTC	1 cut(s)	1197
StyD4I	CCNGG	2 cut(s)	213, 1050
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	6 cut(s)	87, 467, 475, 924, 1066, 1129
TaiI	ACGT	1 cut(s)	919
TaqI	TCGA	3 cut(s)	524, 770, 1073
TasI	AATT	3 cut(s)	8, 13, 200
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	192, 498, 753, 837
Tru9I	TTAA	4 cut(s)	192, 498, 753, 837
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	548, 1123
TseI	GCWGC	5 cut(s)	106, 599, 687, 806, 1089
Tsp45I	GTSAC	2 cut(s)	548, 1123
TspDTI	ATGAA	1 cut(s)	917
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	8
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	2 cut(s)	144, 1038
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	5 cut(s)	92, 120, 441, 492, 888
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.