Rroxscaffold_4G00284360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000153
Physical Location & Seq
Forward (+)
5996308 .. 6007217
10910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284360.1

Sequence Viewer

Length: 267 bp
ATGGAGGTTCTAAACAAGATCTTGGATCTAGGGATGGCAATGGGGCGGGTTGGGGATGGGGATCACAATACCATCCCCATCCCCAAGCACGGGAGCACGGTGGAAGCTGCTGCCGCAAGTCCGGAAGTGGCGCCACCGAGTCGAAACGATCTCCGGCCGCCGCCATCTTTGGCGAACATATTCAAATCCCATGTTCCCTTCTTCCACCTTGCATCACTAAATTTCACAGCAGAAGATTCTCTATCCAAAGCGGGCTTCAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.35

Weight (kDa)

6.01

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 5 cut(s) 46, 114, 158, 161, 251
AclWI GGATC 2 cut(s) 33, 69
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 89, 90
AgsI TTSAA 2 cut(s) 184, 259
AjuI GAANNNNNNNTTGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 2 cut(s) 33, 69
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 94, 97
BccI CCATC 5 cut(s) 28, 50, 80, 86, 172
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 134
BglII AGATCT 1 cut(s) 18
BisI GCNGC 5 cut(s) 108, 111, 114, 158, 161
BlsI GCNGC 5 cut(s) 109, 112, 115, 159, 162
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 90
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 121
BseGI GGATG 4 cut(s) 39, 61, 72, 78
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 89, 90
BseMI GCAATG 1 cut(s) 45
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 94, 97
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 122, 154
BslI CCNNNNNNNGG 2 cut(s) 89, 90
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 18, 25, 61, 148
BspACI CCGC 5 cut(s) 46, 114, 158, 161, 251
BspANI GGCC 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 2 cut(s) 33, 69
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 45
BssMI GATC 4 cut(s) 18, 25, 61, 148
BssNI GRCGYC 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 253
BstF5I GGATG 4 cut(s) 39, 61, 72, 78
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 4 cut(s) 21, 28, 64, 151
BstMBI GATC 4 cut(s) 18, 25, 61, 148
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 94, 97
BstX2I RGATCY 2 cut(s) 18, 25
BstYI RGATCY 2 cut(s) 18, 25
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 4 cut(s) 39, 61, 72, 78
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 133
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 107, 157, 255
CviKI_1 RGCY 3 cut(s) 107, 157, 255
DinI GGCGCC 1 cut(s) 132
DpnI GATC 4 cut(s) 20, 27, 63, 150
DpnII GATC 4 cut(s) 18, 25, 61, 148
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
FaeI CATG 1 cut(s) 194
FaiI YATR 2 cut(s) 179, 192
FatI CATG 1 cut(s) 190
FauI CCCGC 2 cut(s) 39, 244
Fnu4HI GCNGC 5 cut(s) 108, 111, 114, 158, 161
FokI GGATG 4 cut(s) 46, 59, 65, 68
Fsp4HI GCNGC 5 cut(s) 108, 111, 114, 158, 161
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 132
GluI GCNGC 5 cut(s) 108, 111, 114, 158, 161
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 122, 154
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 2 cut(s) 139, 236
HpaII CCGG 2 cut(s) 122, 154
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 131
KasI GGCGCC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 18, 25, 61, 148
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 2 cut(s) 135, 167
Lsp1109I GCAGC 2 cut(s) 94, 97
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 29
MalI GATC 4 cut(s) 20, 27, 63, 150
MboI GATC 4 cut(s) 18, 25, 61, 148
MboII GAAGA 2 cut(s) 193, 245
MflI RGATCY 2 cut(s) 18, 25
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 2 cut(s) 220, 259
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 148
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 179
MspI CCGG 2 cut(s) 122, 154
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 131
NdeII GATC 4 cut(s) 18, 25, 61, 148
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 109, 112, 115, 159, 162
PleI GAGTC 1 cut(s) 147
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 2 cut(s) 18, 25
SatI GCNGC 5 cut(s) 108, 111, 114, 158, 161
Sau3AI GATC 4 cut(s) 18, 25, 61, 148
SchI GAGTC 1 cut(s) 148
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 9, 109, 210
SfaNI GCATC 1 cut(s) 221
SfoI GGCGCC 1 cut(s) 132
Sse9I AATT 2 cut(s) 220, 259
SsiI CCGC 5 cut(s) 46, 114, 158, 161, 251
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 142
TasI AATT 2 cut(s) 220, 259
TauI GCSGC 3 cut(s) 116, 160, 163
TfiI GAWTC 1 cut(s) 236
TseI GCWGC 2 cut(s) 107, 110
XapI RAATTY 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.