Rh1DG264600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000153
Physical Location & Seq
Forward (+)
48163161 .. 48163447
287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG264600.1

Sequence Viewer

Length: 255 bp
ATGGAAAATGGAAGAAAAGGAAAGCCGCTTCTTGCTCAAGACTTAGTGGAGCTACTAAGCAAAAGATGGAGCTCTCGCGTTGCTAACATGAGTTTTTCTAAACCTAAACTGTCGTCTAAGGGCGCTGCTCATGTTGATCTTAGTGACACGCCAAGTGACAACATCGAAGGTAGCCCCCTTAGTGATAATGTTAGTACACATGAGGAGAATGAATCTGATACTTATGAGGGAGAGACCTGCGATGACAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.13

Weight (kDa)

4.61

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 26
AfaI GTAC 1 cut(s) 196
AluBI AGCT 2 cut(s) 52, 72
AluI AGCT 2 cut(s) 52, 72
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 26, 126
BlsI GCNGC 2 cut(s) 27, 127
BpuEI CTTGAG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 26
BspFNI CGCG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 227
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 111, 248
BstDEI CTNAG 5 cut(s) 43, 56, 117, 140, 179
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 136
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 112
BveI ACCTGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 195
CviAII CATG 3 cut(s) 88, 131, 200
CviJI RGCY 4 cut(s) 25, 52, 72, 174
CviKI_1 RGCY 4 cut(s) 25, 52, 72, 174
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 5 cut(s) 43, 56, 117, 140, 179
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 3 cut(s) 91, 134, 203
FaiI YATR 4 cut(s) 89, 132, 201, 225
FatI CATG 3 cut(s) 87, 130, 199
Fnu4HI GCNGC 2 cut(s) 26, 126
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 26, 126
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 26, 126
HaeII RGCGCY 1 cut(s) 126
HhaI GCGC 1 cut(s) 125
Hin1II CATG 3 cut(s) 91, 134, 203
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 111, 248
HpyF3I CTNAG 5 cut(s) 43, 56, 117, 140, 179
Hsp92II CATG 3 cut(s) 91, 134, 203
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 49, 69
LpnPI CCDG 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 143, 155
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 74
MnlI CCTC 2 cut(s) 196, 220
MvnI CGCG 1 cut(s) 78
NdeII GATC 1 cut(s) 136
NlaIII CATG 3 cut(s) 91, 134, 203
NmuCI GTSAC 2 cut(s) 143, 155
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 27, 127
Psp124BI GAGCTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SacI GAGCTC 1 cut(s) 74
SatI GCNGC 2 cut(s) 26, 126
Sau3AI GATC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 54, 74, 106, 172, 239
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SsiI CCGC 1 cut(s) 26
SstI GAGCTC 1 cut(s) 74
TaaI ACNGT 2 cut(s) 111, 248
TaqI TCGA 1 cut(s) 165
TatI WGTACW 1 cut(s) 194
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 212
TseFI GTSAC 2 cut(s) 143, 155
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 2 cut(s) 143, 155
TspDTI ATGAA 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.