Rroxscaffold_1G00045790

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000153
Physical Location & Seq
Forward (+)
64929254 .. 64930620
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045790.1

Sequence Viewer

Length: 681 bp
ATGTGGTGCGAAGATGGAGTCCTGAAACTCACACGTTCATCCGTTCTTGGGGAATTTACTCCTTCTTTGGAAGATGTTTGCAATATTATGCAAATCCCTATTGTTGGGGATGGTAATCCCTTCAAGATAGAGCTAAATAAAGCGCAGAAGAAGAAGCTACAGATTACGAAAAGGGAGTTAAGAGGCAATTTGGCATCGACTAGGATGTGCCATCGCATCTATCCTATGGTGGACATCTTAGGGATTGCATTATGGGTTTCACTCGGACGGATGGTATTTCCTGCGAGGGGTATGCACTCGATAGTCTCGGGAAAAAGGCTGTCTTGGATCCCCACATCAACATTCTTGAGGTTTTGGGAGTTGCGGCGGTGCGAGTTTAGGAGGTTTATTCAAGCGGTGGGACTAGGTTGCGTCCGAAAGCCACTAGTGAGAACAAGAGACTACTCCACGGTAGCAATCGTCATGGGTGTCATGTCTAGACTTAACCTTCCCTATACCGAGGTATACTCGAATGGTATAAAGCGTGTGGTTGGTCACCTCGAGGGTGGTAAAAGTGGAGATGATCCTGAAGTAGAGTTGCCGCCGGAGTGGAGAAAGGTAGCAAGAGCGCTACAAAGGGTAAAGTCGGGGCTTCCGAGGATGGAGGGAAGGCGGAAGGAAGGTTTGCCCCTTCAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

226

Amino Acids

25.72

Weight (kDa)

10.19

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 539
AccI GTMKAC 1 cut(s) 504
AciI CCGC 5 cut(s) 364, 367, 395, 581, 652
AclWI GGATC 3 cut(s) 322, 335, 557
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 588
AfeI AGCGCT 1 cut(s) 609
AfiI CCNNNNNNNGG 3 cut(s) 48, 104, 287
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 3 cut(s) 124, 392, 674
AhlI ACTAGT 1 cut(s) 424
AluBI AGCT 2 cut(s) 133, 157
AluI AGCT 2 cut(s) 133, 157
Alw26I GTCTC 2 cut(s) 310, 432
AlwI GGATC 3 cut(s) 322, 335, 557
Ama87I CYCGRG 2 cut(s) 307, 539
Aor51HI AGCGCT 1 cut(s) 609
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspLEI GCGC 2 cut(s) 145, 610
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 307, 539
BamHI GGATCC 1 cut(s) 327
BccI CCATC 5 cut(s) 8, 104, 219, 265, 634
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BcoDI GTCTC 2 cut(s) 310, 432
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 4 cut(s) 201, 404, 425, 477
BfmI CTRYAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 611
BisI GCNGC 2 cut(s) 365, 581
BlsI GCNGC 2 cut(s) 366, 582
BmeT110I CYCGRG 2 cut(s) 307, 539
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 2 cut(s) 203, 225
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpuEI CTTGAG 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 447, 498, 635
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 104, 287
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 447, 498, 635
BseGI GGATG 5 cut(s) 38, 115, 210, 276, 645
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 48, 104, 287
BsiHKCI CYCGRG 2 cut(s) 307, 539
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 3 cut(s) 48, 104, 287
BsmAI GTCTC 2 cut(s) 310, 432
BsmFI GGGAC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 307, 539
Bsp143I GATC 2 cut(s) 327, 562
BspACI CCGC 5 cut(s) 364, 367, 395, 581, 652
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 3 cut(s) 322, 335, 557
BssECI CCNNGG 3 cut(s) 447, 498, 635
BssMI GATC 2 cut(s) 327, 562
BssNAI GTATAC 1 cut(s) 505
Bst1107I GTATAC 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 447
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 5 cut(s) 38, 115, 210, 276, 645
BstH2I RGCGCY 1 cut(s) 611
BstHHI GCGC 2 cut(s) 145, 610
BstKTI GATC 2 cut(s) 330, 565
BstMAI GTCTC 2 cut(s) 310, 432
BstMBI GATC 2 cut(s) 327, 562
BstPI GGTNACC 1 cut(s) 533
BstSFI CTRYAG 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZ17I GTATAC 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 5 cut(s) 38, 115, 210, 276, 645
CfoI GCGC 2 cut(s) 145, 610
CseI GACGC 1 cut(s) 400
CviAII CATG 2 cut(s) 463, 472
CviJI RGCY 5 cut(s) 133, 157, 319, 421, 631
CviKI_1 RGCY 5 cut(s) 133, 157, 319, 421, 631
DdeI CTNAG 1 cut(s) 238
DpnI GATC 2 cut(s) 329, 564
DpnII GATC 2 cut(s) 327, 562
EciI GGCGGA 1 cut(s) 667
Eco47III AGCGCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 2 cut(s) 307, 539
Eco91I GGTNACC 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 533
FaeI CATG 2 cut(s) 466, 475
FaiI YATR 9 cut(s) 89, 227, 253, 293, 464, 473, 495, 505, 518
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 414
FatI CATG 2 cut(s) 462, 471
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 365, 581
FokI GGATG 5 cut(s) 25, 122, 217, 283, 652
Fsp4HI GCNGC 2 cut(s) 365, 581
FspBI CTAG 4 cut(s) 201, 404, 425, 477
GlaI GCGC 2 cut(s) 144, 609
GluI GCNGC 2 cut(s) 365, 581
HaeII RGCGCY 1 cut(s) 611
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 400
HhaI GCGC 2 cut(s) 145, 610
Hin1II CATG 2 cut(s) 466, 475
Hin6I GCGC 2 cut(s) 143, 608
HinP1I GCGC 2 cut(s) 143, 608
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 2 cut(s) 232, 505
Hpy188I TCNGA 3 cut(s) 266, 416, 636
Hpy188III TCNNGA 6 cut(s) 22, 124, 309, 346, 477, 566
Hpy8I GTNNAC 2 cut(s) 232, 505
HpyAV CCTTC 7 cut(s) 72, 130, 497, 642, 649, 653, 680
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 81, 91, 248, 295
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 466, 475
HspAI GCGC 2 cut(s) 143, 608
Kzo9I GATC 2 cut(s) 327, 562
LpnPI CCDG 4 cut(s) 35, 294, 579, 597
LweI GCATC 2 cut(s) 203, 225
MaeI CTAG 4 cut(s) 201, 404, 425, 477
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 533
MalI GATC 2 cut(s) 329, 564
MboI GATC 2 cut(s) 327, 562
MboII GAAGA 4 cut(s) 23, 83, 160, 163
MflI RGATCY 1 cut(s) 327
MluCI AATT 2 cut(s) 53, 187
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 9 cut(s) 176, 279, 342, 375, 493, 535, 548, 630, 637
MseI TTAA 2 cut(s) 179, 483
MspI CCGG 1 cut(s) 584
NdeII GATC 2 cut(s) 327, 562
NlaIII CATG 2 cut(s) 466, 475
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 539
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PkrI GCNGC 2 cut(s) 366, 582
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 539
PsuI RGATCY 1 cut(s) 327
SaqAI TTAA 2 cut(s) 179, 483
SatI GCNGC 2 cut(s) 365, 581
Sau3AI GATC 2 cut(s) 327, 562
SchI GAGTC 1 cut(s) 27
SfaNI GCATC 2 cut(s) 203, 225
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 539
SlaI CTCGAG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 346, 539
SmoI CTYRAG 2 cut(s) 346, 539
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 2 cut(s) 53, 187
SsiI CCGC 5 cut(s) 364, 367, 395, 581, 652
SspI AATATT 1 cut(s) 85
SspMI CTAG 4 cut(s) 201, 404, 425, 477
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 37
TaqI TCGA 4 cut(s) 197, 299, 509, 540
TasI AATT 2 cut(s) 53, 187
TauI GCSGC 2 cut(s) 367, 583
Tru1I TTAA 2 cut(s) 179, 483
Tru9I TTAA 2 cut(s) 179, 483
TseFI GTSAC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 2 cut(s) 31, 283
XapI RAATTY 1 cut(s) 53
XbaI TCTAGA 1 cut(s) 476
XhoI CTCGAG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 4 cut(s) 201, 404, 425, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.