FvH4_2g11201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000153
Physical Location & Seq
Forward (+)
9765071 .. 9766541
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11201.t1

Sequence Viewer

Length: 846 bp
ATGCCTCATTTGGAAGCTGTGCCTCAACCAAAGCAAACTTGGGCTCAACTCTTTGAGTATATTCCCTCCCTTTTGCGATTTTTTTTTGGTAGCGGCACTGATGCTCAGGAGAGGGAACTTGCTATAAATGTCGGTGTTTATGAAGATAACCACAATGAGCAAGCATGCAGAGTTGTAGAAACTTGCCAAGACAATGTAGCTGATACTCAGCCGGTCTTATTGAAAGGTGGAGAATCTGTGTGCAGAGACAACAATCTTGTTAATACAACCTTGGTAAATAGAGAGACTACTTCAACTAATTCTTCCATTCTTGCAACTGACAAGGTGGGGAAAGATTTGTCGACTAATTTAGAGGCACGATTCAGGGACTGTGTTGCCTGCTTTGATGCCAAGGATAGTTTGGGCATTATTGTTGATAGTATTGAAAAACCACCGCTGAGTGGTAATCAATCTCTCATTGAAGGTGATATGGTTCTTTCGGACATGGAAGTCGAGGAAGTGAAGCACGAGGGGACCTTTTTGGTTTGGAGAGATCTATGCCATGATGTAGTAGATTGGGGACTCAAAGTTGGCTTCTTGTTTGATCATCTGAAGCAAGCTGCCCAGAGTTTTTTCGGATATAAACTCAGGCCTGCTGGTTTAGACAACTACTGCAGGGAGGTTCACCAGTTGGAAAAATCCGTACTTGAGCTGAGAAGTGAGCTTGTACGTCTTGAGGAGCAATTGGACAAAGCACAAGAGGGCCTCCGCAGCCAATTTGGCAACGTTATCTGCCCTGACATCATGGCTTGCATTTTAGAGTCCTCATGGACTCCTCAAAGCTGGGCAACTCATGGTTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.6

Weight (kDa)

4.7

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
AccI GTMKAC 1 cut(s) 341
AciI CCGC 3 cut(s) 93, 434, 748
AclI AACGTT 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 3 cut(s) 684, 708, 842
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 4 cut(s) 223, 294, 425, 461
AluBI AGCT 6 cut(s) 17, 200, 599, 691, 703, 822
AluI AGCT 6 cut(s) 17, 200, 599, 691, 703, 822
Alw26I GTCTC 2 cut(s) 240, 278
AlwNI CAGNNNCTG 1 cut(s) 369
AoxI GGCC 2 cut(s) 629, 742
ApeKI GCWGC 2 cut(s) 599, 750
AspS9I GGNCC 2 cut(s) 513, 742
AsuHPI GGTGA 2 cut(s) 476, 656
AvaII GGWCC 1 cut(s) 513
BanII GRGCYC 1 cut(s) 46
BauI CACGAG 1 cut(s) 506
BbvI GCAGC 2 cut(s) 586, 762
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 240, 278
BfaI CTAG 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 652
BglI GCCNNNNNGGC 1 cut(s) 759
BglII AGATCT 1 cut(s) 532
BisI GCNGC 3 cut(s) 94, 600, 751
BlsI GCNGC 3 cut(s) 95, 601, 752
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 513, 742
BmiI GGNNCC 1 cut(s) 514
BmsI GCATC 2 cut(s) 91, 376
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 707, 734
BsaJI CCNNGG 2 cut(s) 270, 390
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 667
BseDI CCNNGG 2 cut(s) 270, 390
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 5 cut(s) 119, 221, 428, 640, 683
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 2 cut(s) 731, 804
BseXI GCAGC 2 cut(s) 586, 762
BseYI CCCAGC 1 cut(s) 822
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 2 cut(s) 631, 744
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 3 cut(s) 380, 526, 573
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 240, 278
BsmFI GGGAC 3 cut(s) 380, 526, 573
BsnI GGCC 2 cut(s) 631, 744
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 532, 583
BspACI CCGC 3 cut(s) 93, 434, 748
BspANI GGCC 2 cut(s) 631, 744
BspCNI CTCAG 5 cut(s) 118, 220, 429, 639, 684
BspLI GGNNCC 1 cut(s) 514
BspMAI CTGCAG 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 270, 390
BssMI GATC 2 cut(s) 532, 583
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 2 cut(s) 270, 390
Bst2BI CACGAG 1 cut(s) 506
Bst4CI ACNGT 1 cut(s) 371
BstC8I GCNNGC 6 cut(s) 162, 166, 379, 597, 633, 790
BstDEI CTNAG 5 cut(s) 105, 207, 437, 626, 692
BstKTI GATC 2 cut(s) 535, 586
BstMAI GTCTC 2 cut(s) 240, 278
BstMBI GATC 2 cut(s) 532, 583
BstMWI GCNNNNNNNGC 2 cut(s) 750, 759
BstNSI RCATGY 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 652
BstV1I GCAGC 2 cut(s) 586, 762
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 2 cut(s) 631, 744
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 6 cut(s) 162, 166, 379, 597, 633, 790
CaiI CAGNNNCTG 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 513, 742
Csp6I GTAC 3 cut(s) 683, 707, 841
CviAII CATG 6 cut(s) 165, 484, 542, 784, 807, 833
CviQI GTAC 3 cut(s) 683, 707, 841
DdeI CTNAG 5 cut(s) 105, 207, 437, 626, 692
DpnI GATC 2 cut(s) 534, 585
DpnII GATC 2 cut(s) 532, 583
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 270, 390
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 611
EcoO109I RGGNCCY 2 cut(s) 513, 742
EcoT14I CCWWGG 2 cut(s) 270, 390
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 270, 390
FaeI CATG 6 cut(s) 168, 487, 545, 787, 810, 836
FaqI GGGAC 3 cut(s) 380, 526, 573
FatI CATG 6 cut(s) 164, 483, 541, 783, 806, 832
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 3 cut(s) 94, 600, 751
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 94, 600, 751
FspBI CTAG 1 cut(s) 844
GluI GCNGC 3 cut(s) 94, 600, 751
GsaI CCCAGC 1 cut(s) 826
HaeIII GGCC 2 cut(s) 631, 744
HapII CCGG 1 cut(s) 212
Hin1II CATG 6 cut(s) 168, 487, 545, 787, 810, 836
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 5 cut(s) 233, 360, 561, 800, 811
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 476, 656
Hpy166II GTNNAC 2 cut(s) 342, 664
Hpy188I TCNGA 3 cut(s) 481, 591, 617
Hpy188III TCNNGA 2 cut(s) 107, 713
Hpy8I GTNNAC 2 cut(s) 342, 664
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 709, 765
HpyCH4V TGCA 5 cut(s) 168, 243, 314, 654, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 750, 759
HpyF3I CTNAG 5 cut(s) 105, 207, 437, 626, 692
HpySE526I ACGT 2 cut(s) 709, 765
Hsp92II CATG 6 cut(s) 168, 487, 545, 787, 810, 836
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 2 cut(s) 532, 583
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 586, 762
LweI GCATC 2 cut(s) 91, 376
MaeI CTAG 1 cut(s) 844
MaeII ACGT 2 cut(s) 709, 765
MalI GATC 2 cut(s) 534, 585
MboI GATC 2 cut(s) 532, 583
MboII GAAGA 2 cut(s) 155, 294
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 298, 346, 722, 755
MlyI GAGTC 3 cut(s) 555, 805, 809
MmeI TCCRAC 1 cut(s) 651
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 722
MwoI GCNNNNNNNGC 2 cut(s) 750, 759
NdeII GATC 2 cut(s) 532, 583
NlaIII CATG 6 cut(s) 168, 487, 545, 787, 810, 836
NlaIV GGNNCC 1 cut(s) 514
NspI RCATGY 1 cut(s) 168
PaeI GCATGC 1 cut(s) 168
PceI AGGCCT 1 cut(s) 631
PfeI GAWTC 2 cut(s) 233, 360
PkrI GCNGC 3 cut(s) 95, 601, 752
PleI GAGTC 3 cut(s) 555, 805, 808
PpsI GAGTC 3 cut(s) 555, 805, 808
PpuMI RGGWCCY 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 765
Psp5II RGGWCCY 1 cut(s) 513
PspFI CCCAGC 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 2 cut(s) 513, 742
PspPPI RGGWCCY 1 cut(s) 513
PstI CTGCAG 1 cut(s) 656
PstNI CAGNNNCTG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 3 cut(s) 684, 708, 842
RsaNI GTAC 3 cut(s) 683, 707, 841
SalI GTCGAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 94, 600, 751
Sau3AI GATC 2 cut(s) 532, 583
Sau96I GGNCC 2 cut(s) 513, 742
SchI GAGTC 3 cut(s) 555, 805, 809
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 91, 376
SfcI CTRYAG 1 cut(s) 652
SinI GGWCC 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 686, 713
SmoI CTYRAG 2 cut(s) 686, 713
SphI GCATGC 1 cut(s) 168
Sse9I AATT 4 cut(s) 298, 346, 722, 755
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 3 cut(s) 93, 434, 748
SspMI CTAG 1 cut(s) 844
StuI AGGCCT 1 cut(s) 631
StyI CCWWGG 2 cut(s) 270, 390
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 712, 768
TaqI TCGA 2 cut(s) 341, 492
TasI AATT 4 cut(s) 298, 346, 722, 755
TatI WGTACW 1 cut(s) 840
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 2 cut(s) 233, 360
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 103
TseI GCWGC 2 cut(s) 599, 750
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 513
XceI RCATGY 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 2 cut(s) 36, 397
XmiI GTMKAC 1 cut(s) 341
XspI CTAG 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.