Rmu_sc0009064.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009064.1
OG0000153
Physical Location & Seq
Reverse (-)
11711 .. 12537
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009064.1_g000002.1.cds

Sequence Viewer

Length: 408 bp
atggcagtacatgcattagttgattctgataagcacgctccagggattgataaggtgactgtcattcagactcaaagccttggcccaagcttgcctgctaaagggtcaaccagtgagtgggcgacccatatggacaactttatgattcgatttgcttctaaagaggagtctgctctaagcatggctgacgttgcaccagtattgagcggagacaccgctgtttttgcgggtatgaaaattccttcagagttagccggtcccttggctagatttgctgagagatatagcggtggagatatctttaacttaattgatcgagactatacttcaaggaagaagtatgggatcagcttgatgcatgaatatgaggatcaaaagtttggggtggatgagctgctgttgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.72

Weight (kDa)

5.08

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 207
AciI CCGC 4 cut(s) 207, 216, 227, 288
AclWI GGATC 2 cut(s) 353, 378
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 101, 117
AgsI TTSAA 1 cut(s) 330
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 90, 351, 394
AluI AGCT 3 cut(s) 90, 351, 394
Alw26I GTCTC 2 cut(s) 204, 312
AlwI GGATC 2 cut(s) 353, 378
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 83, 257
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 204, 312
BfaI CTAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 83, 257
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 41, 79, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 117
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 111, 197
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 41, 79, 261
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 2 cut(s) 101, 117
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 111, 197
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 381
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 101, 117
BsmAI GTCTC 2 cut(s) 204, 312
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 313, 345, 370
BspACI CCGC 4 cut(s) 207, 216, 227, 288
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 353, 378
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 111, 197
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 41, 79, 261
BssMI GATC 3 cut(s) 313, 345, 370
BssT1I CCWWGG 2 cut(s) 79, 261
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 36, 92, 96
BstDEI CTNAG 2 cut(s) 176, 276
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 3 cut(s) 316, 348, 373
BstMAI GTCTC 2 cut(s) 204, 312
BstMBI GATC 3 cut(s) 313, 345, 370
BstMWI GCNNNNNNNGC 4 cut(s) 11, 191, 224, 272
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 3 cut(s) 36, 92, 96
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 83, 257
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 11, 181, 359
CviJI RGCY 8 cut(s) 78, 84, 90, 185, 254, 266, 351, 394
CviKI_1 RGCY 8 cut(s) 78, 84, 90, 185, 254, 266, 351, 394
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 176, 276
DpnI GATC 3 cut(s) 315, 347, 372
DpnII GATC 3 cut(s) 313, 345, 370
Eco130I CCWWGG 2 cut(s) 79, 261
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 40
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 79, 261
EcoT22I ATGCAT 2 cut(s) 16, 360
ErhI CCWWGG 2 cut(s) 79, 261
FaeI CATG 3 cut(s) 14, 184, 362
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 10, 180, 358
FauI CCCGC 1 cut(s) 220
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 255
Hin1II CATG 3 cut(s) 14, 184, 362
HincII GTYRAC 2 cut(s) 108, 402
HindII GTYRAC 2 cut(s) 108, 402
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 4 cut(s) 23, 70, 145, 167
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 108, 402
Hpy188I TCNGA 3 cut(s) 28, 69, 247
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 108, 402
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 14, 194, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 191, 224, 272
HpyF3I CTNAG 2 cut(s) 176, 276
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 14, 184, 362
Kzo9I GATC 3 cut(s) 313, 345, 370
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 6 cut(s) 27, 54, 108, 124, 210, 268
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 315, 347, 372
MbiI CCGCTC 1 cut(s) 207
MboI GATC 3 cut(s) 313, 345, 370
MboII GAAGA 1 cut(s) 346
MluCI AATT 2 cut(s) 237, 309
MlyI GAGTC 2 cut(s) 64, 176
MnlI CCTC 2 cut(s) 157, 361
Mph1103I ATGCAT 2 cut(s) 16, 360
MseI TTAA 2 cut(s) 303, 308
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 11, 191, 224, 272
NdeI CATATG 1 cut(s) 129
NdeII GATC 3 cut(s) 313, 345, 370
NlaIII CATG 3 cut(s) 14, 184, 362
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 2 cut(s) 16, 360
NspI RCATGY 1 cut(s) 14
PfeI GAWTC 2 cut(s) 23, 145
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 2 cut(s) 64, 175
PpsI GAGTC 2 cut(s) 64, 175
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 83, 257
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 303, 308
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 3 cut(s) 313, 345, 370
Sau96I GGNCC 2 cut(s) 83, 257
SchI GAGTC 2 cut(s) 64, 176
ScrFI CCNGG 1 cut(s) 42
SetI ASST 5 cut(s) 57, 92, 192, 353, 396
SfaNI GCATC 1 cut(s) 345
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 2 cut(s) 237, 309
SsiI CCGC 4 cut(s) 207, 216, 227, 288
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 2 cut(s) 79, 261
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 148, 316
TasI AATT 2 cut(s) 237, 309
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 2 cut(s) 23, 145
Tru1I TTAA 2 cut(s) 303, 308
Tru9I TTAA 2 cut(s) 303, 308
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 248, 375
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 99
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 2 cut(s) 16, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.