Rh1AG138000

Cell division cycle protein 48 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000153
Physical Location & Seq
Reverse (-)
26145521 .. 26148701
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG138000.1

Sequence Viewer

Length: 1725 bp
ATGAATGCTAATGCCTCCCCTGCTTATAGTTGTTATTGGAGGGGGGTGTTGTGCAGGTTCAGGCTTTTTGTGGAAGCCGGCGGTCCTCAGCTAAAGTTGGGACCTATTACCAGCAGTAGGTTGGCTAGCCCCAAGGCTGTATTGACTTATGCTGAAAAGCATAACCTCACGTACACCGAAGTGTACATCGATGGTACTAGAAAGGTTGTCGGCTACTTAAAGGGTTTTGAAGCTAAGAGGGTGAAGGGGGAGGAAAAGAAGTGCGATAAGGAGATAGGTGATAAGGGTGATGCGAGGGAACACGACACTCAGAAGCCTATTTGGCGTTTCAAGCCCAAGGTGGATTTTGACAAATTTATGCATACGACCCAACACGGAGTCAAACTGATGATCCCCCCGAGCATGGCTCTTCAAAAGAACAAGGAGGTAAAGAAGAAAAGATCTTCAACACCCCGAGCAGGTGGTACTTCTCATGCAAAGCAAGCGAATGCTACCAATTTCGAAGTGAAGAAAAGGGTGAAGAGGGAGGCTGGTGCAGATTTTGATGTCCCTCTTCGTCGAAGCAACCGTATGAAGTCCAAGAGTTCTCCTTCCCCTCGTGGTCCTCCAGCTTATCTTGAGTTATCTGAATCTGATCACGGAGAAGGTTCTCAAGGGGGTCCAACCGATTCTTCTAAAGAGGATCATACTAATCCTTCAAAAGGGGCATCTGATCATCTGCCTGAAGTGCCTCCCATGATTAGCCAAGATAGTGACAATCAGGTTATCGAAGATGAAGGCATGAGTGATGGTGATAAGGTCGTCGAAGATGAAGGCATGAATGATGGTGATAAGCAAGCCTTAAAAAACGGCAGTGTGAGCAATGACAATCAGGTTGATGCGGGATTTGAGCCTTTGCAACATGTTCCGGGTGAGAGTGAGAATAATGATCAGGAGCAGGGACATCCTTCGGATGTTGGTAAGAGTAATGACGAGGTTGGTCATGACACGGCAGTACATGCCTTAGTTGAGTCTGCTAAGCACACTCCAGGGATTGATAAGGTGACTGTCATTCAAACGCAAAGCCTTGGCCCAAGCTTGCCTGCTAAAGGGTCAACTAGCGAGTGGGCGACCCATATGGACAACTTTATGATTCGATTTGCTTCTAAAGAGGAGTCTGCTCTAAGCATGGCTGACGTTACACCAGTGTTGAGCGGAGACACCGCTGTTTTTGCGGGTATGAAAATTCCTTCAGAGTTAGTGGGTCCCTTGGCTAGATTTGCTGGGAGATATAGCGGTGGAGATATCTTTAGTTTAATTGATCGAGACTATACTTCAAGGAAGAAGTGTGAGTTGATTAAGGAACTTGGCATGATGTTGTACAGCATGGAAGTTTGCCAGATAAAAGATGGAGAAGTATTCCTCATTTGGAGAGACACCTGTCGTGATTTCATGGGGGCAGGTCTTAATGTTGGCTTCCTGTTGGATTCCTTAAAACAAGGTGCAAAGCATTTCTTTGGTTATATGATGAGGTCTGAAGGATCAGAGAACCAGTATGTTAAAGTTCAAGGTCTGCAGGAGATGGTTTCGCAAACCAAGAAGGAGCTTGCACGTCTTGAGGGAGAGTTGCGCAAGGCTCAAGATGATCTGAGTTCCAGTTTGCGTGATGTTTCTGTGCCTGCCATGGAGTGTGTACTGGAATCTTCTTGGAAGGACGGCAGTCACTTCTCTTATTATTTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
CDC48_2 CDC48_N Vps4_C

Protein Analysis

574

Amino Acids

63.34

Weight (kDa)

6.11

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc16I TGCGCA 1 cut(s) 1610
Acc36I ACCTGC 3 cut(s) 45, 449, 1430
AccBSI CCGCTC 1 cut(s) 1194
AciI CCGC 6 cut(s) 81, 881, 1194, 1203, 1214, 1275
AclWI GGATC 3 cut(s) 385, 690, 1528
AcsI RAATTY 2 cut(s) 353, 1224
AcuI CTGAAG 3 cut(s) 744, 1215, 1536
AfaI GTAC 7 cut(s) 173, 185, 196, 466, 996, 1361, 1674
AfiI CCNNNNNNNGG 5 cut(s) 117, 403, 458, 701, 1088
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 8 cut(s) 230, 331, 413, 447, 699, 1055, 1317, 1547
AjiI CACGTC 1 cut(s) 1592
AjnI CCWGG 1 cut(s) 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 5 cut(s) 91, 233, 611, 1077, 1585
AluI AGCT 5 cut(s) 91, 233, 611, 1077, 1585
Alw26I GTCTC 3 cut(s) 1191, 1299, 1407
AlwI GGATC 3 cut(s) 385, 690, 1528
Ama87I CYCGRG 2 cut(s) 397, 453
AoxI GGCC 1 cut(s) 1069
ApoI RAATTY 2 cut(s) 353, 1224
AspLEI GCGC 1 cut(s) 1611
AspS9I GGNCC 6 cut(s) 83, 101, 602, 659, 1070, 1244
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 8 cut(s) 253, 290, 299, 529, 803, 839, 923, 1054
AsuII TTCGAA 1 cut(s) 501
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 2 cut(s) 397, 453
AvaII GGWCC 5 cut(s) 83, 101, 602, 659, 1244
BauI CACGAG 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 87
BccI CCATC 5 cut(s) 185, 782, 818, 1382, 1555
BceAI ACGGC 3 cut(s) 865, 1005, 1711
BciT130I CCWGG 1 cut(s) 1029
BclI TGATCA 3 cut(s) 634, 712, 928
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 1191, 1299, 1407
BfaI CTAG 4 cut(s) 126, 198, 1098, 1254
BfmI CTRYAG 1 cut(s) 1553
BfuAI ACCTGC 3 cut(s) 45, 449, 1430
BglI GCCNNNNNGGC 1 cut(s) 322
BglII AGATCT 1 cut(s) 440
BlpI GCTNAGC 1 cut(s) 1017
Bme1390I CCNGG 2 cut(s) 909, 1029
Bme18I GGWCC 5 cut(s) 83, 101, 602, 659, 1244
BmeT110I CYCGRG 2 cut(s) 397, 453
BmgBI CACGTC 1 cut(s) 1592
BmgT120I GGNCC 6 cut(s) 83, 101, 602, 659, 1070, 1244
BmiI GGNNCC 4 cut(s) 102, 660, 1245, 1246
BmrFI CCNGG 2 cut(s) 909, 1029
BmsI GCATC 3 cut(s) 280, 716, 868
BmtI GCTAGC 1 cut(s) 129
BoxI GACNNNNGTC 2 cut(s) 1419, 1698
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 2 cut(s) 591, 1011
Bpu10I CCTNAGC 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 1017
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 4 cut(s) 636, 638, 1602, 1616
BpuMI CCSGG 1 cut(s) 909
Bsa29I ATCGAT 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 171
BsaJI CCNNGG 6 cut(s) 132, 336, 1028, 1066, 1248, 1662
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 403, 458, 701, 1088
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 1184, 1531, 1635, 1680
Bse3DI GCAATG 1 cut(s) 868
BseBI CCWGG 1 cut(s) 1029
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 6 cut(s) 132, 336, 1028, 1066, 1248, 1662
BseGI GGATG 2 cut(s) 943, 958
BseLI CCNNNNNNNGG 5 cut(s) 117, 403, 458, 701, 1088
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 101, 323, 1619
BseNI ACTGG 4 cut(s) 1184, 1531, 1635, 1680
BseRI GAGGAG 1 cut(s) 1166
BseYI CCCAGC 1 cut(s) 1262
BsgI GTGCAG 2 cut(s) 73, 555
BshFI GGCC 1 cut(s) 1071
BshVI ATCGAT 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 397, 453
BsiSI CCGG 2 cut(s) 78, 908
BslFI GGGAC 4 cut(s) 114, 533, 954, 1230
BslI CCNNNNNNNGG 5 cut(s) 117, 403, 458, 701, 1088
BsmAI GTCTC 3 cut(s) 1191, 1299, 1407
BsmFI GGGAC 4 cut(s) 114, 533, 954, 1230
BsmI GAATGC 2 cut(s) 10, 493
BsnI GGCC 1 cut(s) 1071
BsoBI CYCGRG 2 cut(s) 397, 453
Bsp119I TTCGAA 1 cut(s) 501
Bsp1407I TGTACA 2 cut(s) 183, 1359
Bsp143I GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
Bsp1720I GCTNAGC 1 cut(s) 1017
Bsp19I CCATGG 1 cut(s) 1662
BspACI CCGC 6 cut(s) 81, 881, 1194, 1203, 1214, 1275
BspANI GGCC 1 cut(s) 1071
BspCNI CTCAG 3 cut(s) 100, 322, 1620
BspDI ATCGAT 1 cut(s) 189
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 4 cut(s) 102, 660, 1245, 1246
BspMAI CTGCAG 1 cut(s) 1557
BspMI ACCTGC 3 cut(s) 45, 449, 1430
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 3 cut(s) 385, 690, 1528
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 501
BsrBI CCGCTC 1 cut(s) 1194
BsrDI GCAATG 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 2 cut(s) 183, 1359
BsrI ACTGG 4 cut(s) 1184, 1531, 1635, 1680
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 6 cut(s) 132, 336, 1028, 1066, 1248, 1662
BssMI GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 5 cut(s) 132, 336, 1066, 1248, 1662
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 2 cut(s) 569, 1048
Bst6I CTCTTC 3 cut(s) 414, 515, 558
BstAPI GCANNNNNTGC 1 cut(s) 998
BstAUI TGTACA 2 cut(s) 183, 1359
BstBAI YACGTR 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 8 cut(s) 79, 127, 483, 837, 1079, 1083, 1587, 1659
BstDEI CTNAG 7 cut(s) 87, 234, 309, 1003, 1017, 1163, 1628
BstDSI CCRYGG 1 cut(s) 1662
BstENI CCTNNNNNAGG 2 cut(s) 699, 1086
BstF5I GGATG 2 cut(s) 943, 958
BstHHI GCGC 1 cut(s) 1611
BstKTI GATC 9 cut(s) 393, 443, 637, 685, 715, 931, 1303, 1523, 1627
BstMAI GTCTC 3 cut(s) 1191, 1299, 1407
BstMBI GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
BstMWI GCNNNNNNNGC 9 cut(s) 20, 322, 331, 482, 727, 858, 998, 1211, 1259
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 2 cut(s) 905, 1001
BstPAI GACNNNNGTC 2 cut(s) 1419, 1698
BstSCI CCNGG 2 cut(s) 907, 1027
BstSFI CTRYAG 1 cut(s) 1553
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 1 cut(s) 1071
BsuTUI ATCGAT 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 1662
BtrI CACGTC 1 cut(s) 1592
BtsCI GGATG 2 cut(s) 943, 958
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 2 cut(s) 859, 1191
BveI ACCTGC 3 cut(s) 45, 449, 1430
Cac8I GCNNGC 8 cut(s) 79, 127, 483, 837, 1079, 1083, 1587, 1659
CciI TCATGA 1 cut(s) 982
CfoI GCGC 1 cut(s) 1611
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 6 cut(s) 83, 101, 602, 659, 1070, 1244
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 7 cut(s) 172, 184, 195, 465, 995, 1360, 1673
CviQI GTAC 7 cut(s) 172, 184, 195, 465, 995, 1360, 1673
DdeI CTNAG 7 cut(s) 87, 234, 309, 1003, 1017, 1163, 1628
DpnI GATC 9 cut(s) 392, 442, 636, 684, 714, 930, 1302, 1522, 1626
DpnII GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
Eam1104I CTCTTC 3 cut(s) 414, 515, 558
EarI CTCTTC 3 cut(s) 414, 515, 558
Eco130I CCWWGG 5 cut(s) 132, 336, 1066, 1248, 1662
Eco32I GATATC 1 cut(s) 1285
Eco47I GGWCC 5 cut(s) 83, 101, 602, 659, 1244
Eco57I CTGAAG 3 cut(s) 744, 1215, 1536
Eco88I CYCGRG 2 cut(s) 397, 453
EcoNI CCTNNNNNAGG 2 cut(s) 699, 1086
EcoO109I RGGNCCY 2 cut(s) 101, 1244
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 1285
EcoT14I CCWWGG 5 cut(s) 132, 336, 1066, 1248, 1662
EcoT22I ATGCAT 1 cut(s) 363
ErhI CCWWGG 5 cut(s) 132, 336, 1066, 1248, 1662
FalI AAGNNNNNCTT 4 cut(s) 824, 856, 1478, 1510
FaqI GGGAC 4 cut(s) 114, 533, 954, 1230
FauI CCCGC 2 cut(s) 874, 1207
FauNDI CATATG 1 cut(s) 1116
FbaI TGATCA 3 cut(s) 634, 712, 928
FokI GGATG 2 cut(s) 930, 965
FspBI CTAG 4 cut(s) 126, 198, 1098, 1254
FspI TGCGCA 1 cut(s) 1610
GlaI GCGC 1 cut(s) 1610
GsaI CCCAGC 1 cut(s) 1266
GsuI CTGGAG 2 cut(s) 591, 1011
HaeIII GGCC 1 cut(s) 1071
HapII CCGG 2 cut(s) 78, 908
HhaI GCGC 1 cut(s) 1611
Hin6I GCGC 1 cut(s) 1609
HinP1I GCGC 1 cut(s) 1609
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 8 cut(s) 378, 629, 668, 1010, 1132, 1154, 1466, 1679
HpaII CCGG 2 cut(s) 78, 908
HphI GGTGA 8 cut(s) 253, 290, 299, 529, 803, 839, 923, 1054
Hpy166II GTNNAC 4 cut(s) 174, 184, 1095, 1673
Hpy188I TCNGA 9 cut(s) 312, 628, 634, 712, 952, 1234, 1516, 1525, 1629
Hpy188III TCNNGA 7 cut(s) 617, 932, 983, 1304, 1424, 1595, 1619
Hpy8I GTNNAC 4 cut(s) 174, 184, 1095, 1673
Hpy99I CGWCG 2 cut(s) 561, 806
HpyCH4III ACNGT 2 cut(s) 569, 1048
HpyCH4IV ACGT 3 cut(s) 170, 1176, 1591
HpyCH4V TGCA 8 cut(s) 54, 361, 476, 536, 898, 1484, 1555, 1589
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 322, 331, 482, 727, 858, 998, 1211, 1259
HpyF3I CTNAG 7 cut(s) 87, 234, 309, 1003, 1017, 1163, 1628
HpySE526I ACGT 3 cut(s) 170, 1176, 1591
HspAI GCGC 1 cut(s) 1609
KflI GGGWCCC 1 cut(s) 1244
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Ksp22I TGATCA 3 cut(s) 634, 712, 928
Kzo9I GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 934, 1582
LweI GCATC 3 cut(s) 280, 716, 868
MaeI CTAG 4 cut(s) 126, 198, 1098, 1254
MaeII ACGT 3 cut(s) 170, 1176, 1591
MaeIII GTNAC 4 cut(s) 752, 1042, 1177, 1700
MalI GATC 9 cut(s) 392, 442, 636, 684, 714, 930, 1302, 1522, 1626
MbiI CCGCTC 1 cut(s) 1194
MboI GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
MflI RGATCY 1 cut(s) 440
MluCI AATT 4 cut(s) 353, 496, 1224, 1296
MlyI GAGTC 3 cut(s) 387, 1019, 1163
MmeI TCCRAC 2 cut(s) 686, 1443
Mph1103I ATGCAT 1 cut(s) 363
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 7 cut(s) 218, 842, 1295, 1338, 1446, 1472, 1539
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 2 cut(s) 78, 908
MspR9I CCNGG 2 cut(s) 909, 1029
Mva1269I GAATGC 2 cut(s) 10, 493
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 9 cut(s) 20, 322, 331, 482, 727, 858, 998, 1211, 1259
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 909
NcoI CCATGG 1 cut(s) 1662
NdeI CATATG 1 cut(s) 1116
NdeII GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
NgoMIV GCCGGC 1 cut(s) 77
NheI GCTAGC 1 cut(s) 125
NlaIV GGNNCC 4 cut(s) 102, 660, 1245, 1246
NmuCI GTSAC 3 cut(s) 752, 1042, 1700
NsbI TGCGCA 1 cut(s) 1610
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 2 cut(s) 905, 1001
NspV TTCGAA 1 cut(s) 501
OliI CACNNNNGTG 1 cut(s) 179
PagI TCATGA 1 cut(s) 982
PaqCI CACCTGC 1 cut(s) 449
PciI ACATGT 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PctI GAATGC 2 cut(s) 10, 493
PdiI GCCGGC 1 cut(s) 79
PfeI GAWTC 5 cut(s) 629, 668, 1132, 1466, 1679
PleI GAGTC 3 cut(s) 386, 1018, 1162
PpsI GAGTC 3 cut(s) 386, 1018, 1162
Ppu21I YACGTR 1 cut(s) 171
PpuMI RGGWCCY 2 cut(s) 101, 1244
PscI ACATGT 1 cut(s) 901
PshAI GACNNNNGTC 2 cut(s) 1419, 1698
Psp5II RGGWCCY 2 cut(s) 101, 1244
Psp6I CCWGG 1 cut(s) 1027
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 4 cut(s) 102, 660, 1245, 1246
PspPI GGNCC 6 cut(s) 83, 101, 602, 659, 1070, 1244
PspPPI RGGWCCY 2 cut(s) 101, 1244
PstI CTGCAG 1 cut(s) 1557
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 7 cut(s) 173, 185, 196, 466, 996, 1361, 1674
RsaNI GTAC 7 cut(s) 172, 184, 195, 465, 995, 1360, 1673
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 7 cut(s) 218, 842, 1295, 1338, 1446, 1472, 1539
Sau3AI GATC 9 cut(s) 390, 440, 634, 682, 712, 928, 1300, 1520, 1624
Sau96I GGNCC 6 cut(s) 83, 101, 602, 659, 1070, 1244
SchI GAGTC 3 cut(s) 387, 1019, 1163
ScrFI CCNGG 2 cut(s) 909, 1029
SfaNI GCATC 3 cut(s) 280, 716, 868
SfcI CTRYAG 1 cut(s) 1553
SfuI TTCGAA 1 cut(s) 501
SinI GGWCC 5 cut(s) 83, 101, 602, 659, 1244
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 4 cut(s) 617, 651, 1595, 1617
SmoI CTYRAG 4 cut(s) 617, 651, 1595, 1617
Sse9I AATT 4 cut(s) 353, 496, 1224, 1296
SsiI CCGC 6 cut(s) 81, 881, 1194, 1203, 1214, 1275
SspMI CTAG 4 cut(s) 126, 198, 1098, 1254
StyD4I CCNGG 2 cut(s) 907, 1027
StyI CCWWGG 5 cut(s) 132, 336, 1066, 1248, 1662
TaaI ACNGT 2 cut(s) 569, 1048
TaiI ACGT 3 cut(s) 173, 1179, 1594
TaqI TCGA 7 cut(s) 189, 501, 559, 768, 804, 1135, 1303
TasI AATT 4 cut(s) 353, 496, 1224, 1296
TatI WGTACW 4 cut(s) 183, 994, 1359, 1672
TfiI GAWTC 5 cut(s) 629, 668, 1132, 1466, 1679
Tru1I TTAA 7 cut(s) 218, 842, 1295, 1338, 1446, 1472, 1539
Tru9I TTAA 7 cut(s) 218, 842, 1295, 1338, 1446, 1472, 1539
TscAI CASTG 2 cut(s) 859, 1191
TseFI GTSAC 3 cut(s) 752, 1042, 1700
Tsp45I GTSAC 3 cut(s) 752, 1042, 1700
TspDTI ATGAA 7 cut(s) 17, 587, 789, 825, 833, 1235, 1420
TspGWI ACGGA 2 cut(s) 390, 654
TspRI CASTG 2 cut(s) 859, 1191
VpaK11BI GGWCC 5 cut(s) 83, 101, 602, 659, 1244
XagI CCTNNNNNAGG 2 cut(s) 699, 1086
XapI RAATTY 2 cut(s) 353, 1224
XceI RCATGY 2 cut(s) 905, 1001
XcmI CCANNNNNNNNNTGG 2 cut(s) 118, 1385
XspI CTAG 4 cut(s) 126, 198, 1098, 1254
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.