Rmu_sc0002321.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002321.1
OG0000153
Physical Location & Seq
Forward (+)
166671 .. 167217
547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002321.1_g000021.1.cds

Sequence Viewer

Length: 405 bp
atggctgacgttgcaccagtattgagcggagacaccgctgtttttgcgggtatgaaaattccttcagagttagccggtcccttggctagatttgctgagagatatagcggtggagatatctttaacttaattgatcgagactatacttcaaggaagaagtgtgcacaacacttctttggttatatgataaggcctgaaggatcaaagaaccagtgtgttaaaattcgtggtttgcaagagatggtttcacaatccaagaaggagcttgcacgtcttgagggagagttgcgcaaggctcaagatgatttgaatttcagtttgcgtgatgttcccatgcttgctatggagtgtgtactggaatcttctaggaatgatgacagttgcttctttcattatctgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.15

Weight (kDa)

6.12

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 27
AciI CCGC 4 cut(s) 27, 36, 47, 108
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 3 cut(s) 57, 222, 310
AcuI CTGAAG 2 cut(s) 48, 216
AfaI GTAC 2 cut(s) 354, 401
AgsI TTSAA 2 cut(s) 150, 310
AjiI CACGTC 1 cut(s) 272
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 24, 132
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 191
ApaLI GTGCAC 1 cut(s) 162
ApoI RAATTY 3 cut(s) 57, 222, 310
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 24, 132
BfaI CTAG 3 cut(s) 87, 366, 403
Bme18I GGWCC 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 282, 296
BsaJI CCNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 17, 211, 360
BseDI CCNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 17, 211, 360
BseSI GKGCMC 1 cut(s) 166
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 24, 132
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 133, 200
BspACI CCGC 4 cut(s) 27, 36, 47, 108
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 3 cut(s) 17, 211, 360
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 133, 200
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 267, 339
BstDEI CTNAG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 136, 203
BstMAI GTCTC 2 cut(s) 24, 132
BstMBI GATC 2 cut(s) 133, 200
BstMWI GCNNNNNNNGC 3 cut(s) 11, 44, 92
BstSLI GKGCMC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 193
BtrI CACGTC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 267, 339
CfoI GCGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 353, 400
CviAII CATG 1 cut(s) 334
CviJI RGCY 6 cut(s) 5, 74, 86, 193, 265, 296
CviKI_1 RGCY 6 cut(s) 5, 74, 86, 193, 265, 296
CviQI GTAC 2 cut(s) 353, 400
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 135, 202
DpnII GATC 2 cut(s) 133, 200
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 193
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 48, 216
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 337
FaiI YATR 7 cut(s) 53, 105, 144, 183, 185, 335, 344
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 40
FspBI CTAG 3 cut(s) 87, 366, 403
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 291
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 164, 353
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 137, 275, 299
Hpy8I GTNNAC 2 cut(s) 164, 353
HpyAV CCTTC 3 cut(s) 72, 191, 253
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 9, 271
HpyCH4V TGCA 4 cut(s) 14, 164, 235, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 44, 92
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 9, 271
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 133, 200
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 30, 88, 207, 224, 341
MaeI CTAG 3 cut(s) 87, 366, 403
MaeII ACGT 2 cut(s) 9, 271
MalI GATC 2 cut(s) 135, 202
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 133, 200
MboII GAAGA 2 cut(s) 166, 354
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 4 cut(s) 57, 129, 222, 310
MnlI CCTC 1 cut(s) 271
MseI TTAA 3 cut(s) 123, 128, 219
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 11, 44, 92
NdeII GATC 2 cut(s) 133, 200
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 79
NsbI TGCGCA 1 cut(s) 290
PceI AGGCCT 1 cut(s) 193
PfeI GAWTC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 2 cut(s) 354, 401
RsaNI GTAC 2 cut(s) 353, 400
SaqAI TTAA 3 cut(s) 123, 128, 219
Sau3AI GATC 2 cut(s) 133, 200
Sau96I GGNCC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 166
SetI ASST 3 cut(s) 12, 267, 274
SinI GGWCC 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 275, 297
SmoI CTYRAG 2 cut(s) 275, 297
Sse9I AATT 4 cut(s) 57, 129, 222, 310
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 4 cut(s) 27, 36, 47, 108
SspMI CTAG 3 cut(s) 87, 366, 403
StuI AGGCCT 1 cut(s) 193
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 2 cut(s) 12, 274
TaqI TCGA 1 cut(s) 136
TasI AATT 4 cut(s) 57, 129, 222, 310
TatI WGTACW 2 cut(s) 352, 399
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 123, 128, 219
Tru9I TTAA 3 cut(s) 123, 128, 219
TscAI CASTG 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 68, 380
TspRI CASTG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 3 cut(s) 57, 222, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 3 cut(s) 87, 366, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.