Rh4AG186000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000153
Physical Location & Seq
Reverse (-)
46374365 .. 46379799
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG186000.1

Sequence Viewer

Length: 402 bp
ATGGAGGAAGCTGTATCCAAGTTGAGGGAAAAGCTTTTGCATCTTGAACAACAATTAGGAAAGGCGCGAGAAGACTTATGCACCAAGCTTGGTGATGACATTAGCTTAGATAGCAAGTCCTACATATTAAGATCTTCTTGGGTTGCTCAGAGCTATGCAACTCATGGCTTTTACATAAAACGCCTGACTTGTCTCACCGCTGGAATAGGCCACGCTTGCTGCGTTGTAATGATACGCCTGATTTATGTTCCTGCCTTGGCCAACATGATTGGTTACAGCCCCCAAGTCCTCTCTTCCAAATGTTGGAAAAATCCTTTTGCATTCATTCGAGTGTGGCCATGGGGCATTGTAACCCTGAGGCTTAGTGTACCTGCTCCAAGAAAACTAGTCAAAGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

9.57

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AccB7I CCANNNNNTGG 1 cut(s) 303
AccII CGCG 1 cut(s) 67
AciI CCGC 1 cut(s) 198
AcoI YGGCCR 2 cut(s) 258, 335
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 24, 303
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 385
AluBI AGCT 5 cut(s) 11, 34, 88, 105, 153
AluI AGCT 5 cut(s) 11, 34, 88, 105, 153
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 3 cut(s) 208, 258, 335
ApeKI GCWGC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 104, 187
AxyI CCTNAGG 1 cut(s) 356
BalI TGGCCA 2 cut(s) 260, 337
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 206
BciVI GTATCC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 385
BfaI CTAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 379
BfuI GTATCC 1 cut(s) 25
BglII AGATCT 1 cut(s) 131
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 255, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 303
Bse21I CCTNAGG 1 cut(s) 356
BseDI CCNNGG 2 cut(s) 255, 338
BseLI CCNNNNNNNGG 2 cut(s) 24, 303
BseMII CTCAG 2 cut(s) 161, 347
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 210, 260, 337
BslI CCNNNNNNNGG 2 cut(s) 24, 303
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 3 cut(s) 210, 260, 337
Bsp143I GATC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 210, 260, 337
BspCNI CTCAG 2 cut(s) 160, 348
BspFNI CGCG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 255, 338
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 255, 338
Bst6I CTCTTC 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 4 cut(s) 106, 147, 356, 362
BstDSI CCRYGG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 2 cut(s) 111, 216
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 356
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 3 cut(s) 210, 260, 337
BtgI CCRYGG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 164, 265, 339
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 4 cut(s) 106, 147, 356, 362
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 258, 335
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 255, 338
Eco81I CCTNAGG 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 255, 338
ErhI CCWWGG 2 cut(s) 255, 338
FaeI CATG 3 cut(s) 167, 268, 342
FaiI YATR 8 cut(s) 79, 125, 156, 165, 176, 246, 266, 340
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 3 cut(s) 163, 264, 338
Fnu4HI GCNGC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 3 cut(s) 210, 260, 337
HhaI GCGC 1 cut(s) 67
Hin1II CATG 3 cut(s) 167, 268, 342
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 2 cut(s) 32, 86
HphI GGTGA 2 cut(s) 104, 187
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 368
HpyCH4V TGCA 4 cut(s) 40, 81, 158, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 216
HpyF3I CTNAG 4 cut(s) 106, 147, 356, 362
Hsp92II CATG 3 cut(s) 167, 268, 342
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 6 cut(s) 186, 197, 251, 264, 368, 384
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 272, 349
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 3 cut(s) 83, 126, 285
MflI RGATCY 1 cut(s) 131
MlsI TGGCCA 2 cut(s) 260, 337
MluCI AATT 1 cut(s) 53
MluNI TGGCCA 2 cut(s) 260, 337
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 3 cut(s) 18, 299, 351
Mox20I TGGCCA 2 cut(s) 260, 337
MscI TGGCCA 2 cut(s) 260, 337
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 2 cut(s) 260, 337
MspA1I CMGCKG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 320
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 111, 216
NcoI CCATGG 1 cut(s) 338
NdeII GATC 1 cut(s) 131
NlaIII CATG 3 cut(s) 167, 268, 342
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 131
SetI ASST 7 cut(s) 13, 36, 90, 107, 155, 373, 397
SfaNI GCATC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 385
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 386
StyI CCWWGG 2 cut(s) 255, 338
TaqI TCGA 1 cut(s) 328
TasI AATT 1 cut(s) 53
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 303
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.