Rmu_sc0030983.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030983.1
OG0000153
Physical Location & Seq
Forward (+)
1 .. 992
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030983.1_g000001.1.cds

Sequence Viewer

Length: 759 bp
tctctggaagatgtttgcaatattatgagaatcccgatcgttggggacggtaatcccttgaagatagagctggatagggtgcagaagaagaagctacaggttctggaaaagggttttgattatggctgccgggtggaagctatgtttgcttactggttgagcaggtttatttttgcggattttccctatgagaatgtgcagcaacgatatctagcttcattccttcaactatttgtatgggagagatttaaaggcttggtcgtggaacctgtaacccctaagtcccttcaccaacttgaagggggcaaaagagatttcaatgtagtagggttctcattgtgctgcatatggttcagaagaaaagtcaagaagggtgcatttaggcctgctattctgaatgacatcggacaattcaatttcaggccatattttactgctcacggcttccagacatttcctttctttaatctagagggtaactcattagctttcttgggatccgttgagctgcttctagccactaatgtgcagtccataatagcatatgatgatttctttgaccttgcggtggagatatatttccctcatagagttaaaaggcaatttggcatcgatcaggatgtgtcatctcatctatattatggtggacatctcgggaattgcatcatggatgtcacttggacagatggtatttttcttgcagtggtatacttttttatagtctcgggaaaaaggacaatgtcggctcccctacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

252

Amino Acids

29.11

Weight (kDa)

8.22

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 708
AciI CCGC 2 cut(s) 176, 566
AclWI GGATC 2 cut(s) 492, 505
AfiI CCNNNNNNNGG 2 cut(s) 41, 568
AgsI TTSAA 5 cut(s) 61, 227, 299, 319, 415
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 6 cut(s) 70, 94, 140, 215, 488, 508
AluI AGCT 6 cut(s) 70, 94, 140, 215, 488, 508
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 2 cut(s) 492, 505
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 2 cut(s) 653, 724
AoxI GGCC 2 cut(s) 383, 422
ApeKI GCWGC 4 cut(s) 126, 199, 342, 508
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 2 cut(s) 653, 724
BamHI GGATCC 1 cut(s) 497
BbvI GCAGC 4 cut(s) 113, 211, 329, 495
BccI CCATC 1 cut(s) 680
BceAI ACGGC 1 cut(s) 457
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 727
BfaI CTAG 3 cut(s) 212, 470, 515
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 4 cut(s) 127, 200, 343, 509
BlsI GCNGC 4 cut(s) 128, 201, 344, 510
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 2 cut(s) 653, 724
BmiI GGNNCC 3 cut(s) 267, 499, 747
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 618, 672
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 612
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 568
Bse1I ACTGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 612
BseGI GGATG 2 cut(s) 625, 676
BseLI CCNNNNNNNGG 2 cut(s) 41, 568
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 4 cut(s) 113, 211, 329, 495
BsgI GTGCAG 3 cut(s) 101, 218, 548
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 385, 424
BshVI ATCGAT 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 653, 724
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 59, 268
BslI CCNNNNNNNGG 2 cut(s) 41, 568
BsmAI GTCTC 1 cut(s) 727
BsmFI GGGAC 2 cut(s) 59, 268
BsnI GGCC 2 cut(s) 385, 424
BsoBI CYCGRG 2 cut(s) 653, 724
Bsp143I GATC 3 cut(s) 36, 497, 613
BspACI CCGC 2 cut(s) 176, 566
BspANI GGCC 2 cut(s) 385, 424
BspDI ATCGAT 1 cut(s) 612
BspLI GGNNCC 3 cut(s) 267, 499, 747
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 2 cut(s) 492, 505
BsrI ACTGG 1 cut(s) 158
BssMI GATC 3 cut(s) 36, 497, 613
BssNAI GTATAC 1 cut(s) 709
Bst1107I GTATAC 1 cut(s) 709
Bst4CI ACNGT 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 625, 676
BstKTI GATC 3 cut(s) 39, 500, 616
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 3 cut(s) 36, 497, 613
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 4 cut(s) 113, 211, 329, 495
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BstZ17I GTATAC 1 cut(s) 709
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 2 cut(s) 385, 424
BsuTUI ATCGAT 1 cut(s) 612
BtsCI GGATG 2 cut(s) 625, 676
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 1 cut(s) 708
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 612
CviAII CATG 1 cut(s) 667
DdeI CTNAG 1 cut(s) 279
DpnI GATC 3 cut(s) 38, 499, 615
DpnII GATC 3 cut(s) 36, 497, 613
DraI TTTAAA 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 385
Eco32I GATATC 1 cut(s) 209
Eco88I CYCGRG 2 cut(s) 653, 724
EcoRV GATATC 1 cut(s) 209
FaeI CATG 1 cut(s) 670
FaqI GGGAC 2 cut(s) 59, 268
FatI CATG 1 cut(s) 666
FauNDI CATATG 2 cut(s) 347, 544
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 4 cut(s) 127, 200, 343, 509
FokI GGATG 2 cut(s) 632, 683
Fsp4HI GCNGC 4 cut(s) 127, 200, 343, 509
FspBI CTAG 3 cut(s) 212, 470, 515
GluI GCNGC 4 cut(s) 127, 200, 343, 509
HaeIII GGCC 2 cut(s) 385, 424
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 670
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 647, 709
Hpy188I TCNGA 3 cut(s) 356, 396, 407
Hpy188III TCNNGA 9 cut(s) 5, 34, 104, 367, 448, 470, 617, 655, 726
Hpy8I GTNNAC 2 cut(s) 647, 709
HpyAV CCTTC 4 cut(s) 233, 293, 296, 364
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 8 cut(s) 18, 82, 199, 345, 377, 529, 663, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 670
Kzo9I GATC 3 cut(s) 36, 497, 613
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 4 cut(s) 113, 211, 329, 495
LweI GCATC 2 cut(s) 618, 672
MaeI CTAG 3 cut(s) 212, 470, 515
MaeIII GTNAC 3 cut(s) 271, 476, 673
MalI GATC 3 cut(s) 38, 499, 615
MboI GATC 3 cut(s) 36, 497, 613
MboII GAAGA 5 cut(s) 20, 73, 97, 100, 369
MflI RGATCY 1 cut(s) 497
MluCI AATT 4 cut(s) 410, 415, 602, 658
MnlI CCTC 2 cut(s) 466, 594
MseI TTAA 4 cut(s) 249, 465, 594, 757
MslI CAYNNNNRTG 1 cut(s) 524
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 131
NdeI CATATG 2 cut(s) 347, 544
NdeII GATC 3 cut(s) 36, 497, 613
NlaIII CATG 1 cut(s) 670
NlaIV GGNNCC 3 cut(s) 267, 499, 747
NmuCI GTSAC 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 524
PceI AGGCCT 1 cut(s) 385
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 739
PkrI GCNGC 4 cut(s) 128, 201, 344, 510
Ple19I CGATCG 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 267, 499, 747
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 497
PsyI GACNNNGTC 1 cut(s) 739
PvuI CGATCG 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 4 cut(s) 249, 465, 594, 757
SatI GCNGC 4 cut(s) 127, 200, 343, 509
Sau3AI GATC 3 cut(s) 36, 497, 613
ScrFI CCNGG 1 cut(s) 131
SfaNI GCATC 2 cut(s) 618, 672
SfcI CTRYAG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 4 cut(s) 410, 415, 602, 658
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 2 cut(s) 176, 566
SspI AATATT 1 cut(s) 22
SspMI CTAG 3 cut(s) 212, 470, 515
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 612
TasI AATT 4 cut(s) 410, 415, 602, 658
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 4 cut(s) 249, 465, 594, 757
Tru9I TTAA 4 cut(s) 249, 465, 594, 757
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 4 cut(s) 126, 199, 342, 508
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 1 cut(s) 708
Tth111I GACNNNGTC 1 cut(s) 739
XbaI TCTAGA 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 3 cut(s) 212, 470, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.