Rmu_sc0004877.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004877.1
OG0000153
Physical Location & Seq
Reverse (-)
1 .. 4332
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004877.1_g000001.1.cds

Sequence Viewer

Length: 2546 bp
atggctcctgaggtgtgtagtctagttgatcaccatttcgtgcttgaggatggccttaagaaggagtttagaggcaattatgaaacttccagagatgtcagtcttgagcagatttccaggctactgattgagaggggggattatccggcagttcccataaactttgagtatccctgtggtttagttacgggatggccacaatgggttgaccatgaattaaaagatgaggccacgagaatcagactttcagaggctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacagggatgtggagtctcttcgtcatgtagttcgaagatggaatcctcacacgcatacctttgtttgcgagtggggagagtttacccctcccttggaggatgtcttgaacattatgaggcttcccattacttgttcagtcaaccctcttggctttgattttgactcagagaagttgcaggttcttgtagaaggggcctccagtgtcaaaggaagtaagcgccgtttctcgaattgggtgaagcatttttggggtgttaccgaaaatagggtatttgtcccaggtaaaggctttgattctggttgccgtctggaagcgatgctatccctgtggctgacgaaatctgtcttcattgagttctcttatgagtatgtcgaagagctcctgtttcccttggaaattgcaatagcagccggcagtaggtttcctttgggatcattagacgttccctcacctccacctcgctctcttaactctaagatcacaagcttttctcatatggagcgtagatgtgtacttgacttttctggcagaattgcggacttcccatctcagttgccagggaatgtcgcgaatgctaatgcctcccctgcttatagttgttattggaggggagtgttgtgcaggttcaggctttttgtggaagccggcggtcctcagctaaagttgggacctattaccagcagtaggttggctagccccaaggctgtactgacttatgctgaaaagcataaccttacgtataccgaagtgtacagcgatggtactagaaaggtggttggctatttaaagggttttgaagctaagagggtgaagggagaggaaaagaagtgcgataagaagataggtgataagggtgatgcgagggagcacaacactcagaagcctgttcggtgtttcaagcccaaggtggattttgacaagtttatgcatacgacccaacacggagtcaaactgatgatccccccaagcatgccgcttcaaaagaacaaggaggtcaagaagaaaagatcttcaacaccccgagcaggtggtacttctcatgcaaaggaagcaaatgctaccaatttcgaagtgaagaaaagggtgaagagggaagctggtgcagattttgatgtccctcttcgtcgaagcaaccgtgtgaaatccaagagttctccttcccctcgtggtcctccagcttatcttgagttatctgattctaatcacggagagggttctcaagggggtccgaccgattcttctaaagaggatcatactaatccttcaaaaggggcatttgatcatctgcctaaagtgcctcccatgattagccaagatagtgacaatcaggttatcgaagatgaaggcatgagtgatggtgataaggtcgtcacagatgaaggcatgagtgatggtgataaggttgtcaaagatgaaggcatgagtgatggtgataaggttgtcgaagatgaaggcatgggtgatggtgataaccaagcctttaaaaacggcagtgtgagcaatgacaaccaggagcagggtcatccttcagatgttggtaagagtaatgacgaggttggtcatgacacggcagtacatgccttagttgagtctgataagcacactccagggattgataaggtgactgtcattcaaactcaaagccttggcccaagcttgcctgctaaagggtcaactagtgagtgggcgacccatatggacaactttatgattcaatttgcttctaaagaggagtctgctctaagcatggctgacgttacaccagtgttgagcggagacatcgctgtttttgcgggtatgaaaattccttcagagttagtgggtcccttagctagatttgctgagagatatagcggtggagatatctttagtttaattgatcgagactatacttcaaggaagaagtgtgagttgattaaggaacttggcatgatgttgtacagcatagaagtttgccagataaaagatggagaagtattcctcatttggagagacacctgtcgtgatttcatgggggcaggtcttaacgttggcttcctgttggattccttaaaacaaggtgcaaagcatttctttggttatatgatgaggtctgaaggatcagagaaccagtatgttaaagttcaaggtctgcaggagatggtttcgcaaagcaagaaggagcttgcacgtcttgagggagagttgcgcaaggctcaagatgatctgagttccagtctgcgtgacgtttctgtgcctgccatgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

848

Amino Acids

94.11

Weight (kDa)

6.0

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1316
Acc16I TGCGCA 1 cut(s) 2489
Acc36I ACCTGC 4 cut(s) 466, 912, 1316, 2309
AccBSI CCGCTC 1 cut(s) 2073
AccI GTMKAC 1 cut(s) 1040
AccII CGCG 1 cut(s) 869
AciI CCGC 6 cut(s) 836, 948, 1274, 2073, 2093, 2154
AclI AACGTT 1 cut(s) 2328
AclWI GGATC 4 cut(s) 739, 1252, 1557, 2407
AcoI YGGCCR 1 cut(s) 194
AcsI RAATTY 1 cut(s) 2103
AcuI CTGAAG 3 cut(s) 1812, 2094, 2415
AfaI GTAC 7 cut(s) 813, 1008, 1052, 1063, 1333, 1875, 2240
AflII CTTAAG 1 cut(s) 56
AhlI ACTAGT 1 cut(s) 1976
AjiI CACGTC 1 cut(s) 2471
AjnI CCWGG 5 cut(s) 116, 577, 856, 1809, 1906
AluBI AGCT 9 cut(s) 679, 786, 958, 1100, 1397, 1478, 1956, 2132, 2464
AluI AGCT 9 cut(s) 679, 786, 958, 1100, 1397, 1478, 1956, 2132, 2464
Alw21I GWGCWC 2 cut(s) 681, 1170
Alw26I GTCTC 4 cut(s) 318, 2070, 2178, 2286
AlwI GGATC 4 cut(s) 739, 1252, 1557, 2407
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 1320
AoxI GGCC 5 cut(s) 52, 194, 228, 492, 1948
ApeKI GCWGC 2 cut(s) 254, 707
ApoI RAATTY 1 cut(s) 2103
AspLEI GCGC 2 cut(s) 519, 2490
AspS9I GGNCC 7 cut(s) 492, 950, 968, 1469, 1526, 1949, 2123
AsuII TTCGAA 2 cut(s) 331, 1368
AsuNHI GCTAGC 1 cut(s) 992
AvaI CYCGRG 1 cut(s) 1320
AvaII GGWCC 5 cut(s) 950, 968, 1469, 1526, 2123
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 681
BauI CACGAG 2 cut(s) 232, 1464
BbsI GAAGAC 1 cut(s) 637
Bbv12I GWGCWC 2 cut(s) 681, 1170
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 241, 719
BceAI ACGGC 4 cut(s) 504, 588, 1804, 1884
BciT130I CCWGG 5 cut(s) 118, 579, 858, 1811, 1908
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 2 cut(s) 28, 1579
BcoDI GTCTC 4 cut(s) 318, 2070, 2178, 2286
BcuI ACTAGT 1 cut(s) 1976
BfaI CTAG 5 cut(s) 23, 993, 1065, 1977, 2133
BfmI CTRYAG 1 cut(s) 2432
BfoI RGCGCY 1 cut(s) 520
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 4 cut(s) 466, 912, 1316, 2309
BfuI GTATCC 1 cut(s) 180
BglII AGATCT 1 cut(s) 1307
BisI GCNGC 3 cut(s) 255, 708, 1274
BlsI GCNGC 3 cut(s) 256, 709, 1275
Bme1390I CCNGG 5 cut(s) 118, 579, 858, 1811, 1908
Bme18I GGWCC 5 cut(s) 950, 968, 1469, 1526, 2123
BmeT110I CYCGRG 1 cut(s) 1320
BmgBI CACGTC 1 cut(s) 2471
BmgT120I GGNCC 7 cut(s) 492, 950, 968, 1469, 1526, 1949, 2123
BmiI GGNNCC 6 cut(s) 6, 493, 969, 1527, 2124, 2125
BmrFI CCNGG 5 cut(s) 118, 579, 858, 1811, 1908
BmsI GCATC 2 cut(s) 606, 1147
BmtI GCTAGC 1 cut(s) 996
BoxI GACNNNNGTC 1 cut(s) 2298
BpiI GAAGAC 1 cut(s) 637
BpmI CTGGAG 3 cut(s) 481, 1458, 1890
Bpu10I CCTNAGC 2 cut(s) 954, 2128
Bpu14I TTCGAA 2 cut(s) 331, 1368
BpuEI CTTGAG 6 cut(s) 65, 125, 1503, 1505, 2481, 2495
BsaAI YACGTR 1 cut(s) 1038
BsaBI GATNNNNATC 1 cut(s) 1500
BsaJI CCNNGG 9 cut(s) 390, 577, 690, 857, 999, 1203, 1907, 1945, 2541
Bse118I RCCGGY 2 cut(s) 710, 944
Bse1I ACTGG 4 cut(s) 498, 2063, 2410, 2514
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 1807
Bse8I GATNNNNATC 1 cut(s) 1500
BseBI CCWGG 5 cut(s) 118, 579, 858, 1811, 1908
BseDI CCNNGG 9 cut(s) 390, 577, 690, 857, 999, 1203, 1907, 1945, 2541
BseGI GGATG 5 cut(s) 55, 197, 310, 403, 1822
BseJI GATNNNNATC 1 cut(s) 1500
BseMI GCAATG 1 cut(s) 1807
BseMII CTCAG 6 cut(s) 477, 863, 968, 1190, 2133, 2498
BseNI ACTGG 4 cut(s) 498, 2063, 2410, 2514
BseRI GAGGAG 1 cut(s) 2045
BseXI GCAGC 2 cut(s) 241, 719
BsgI GTGCAG 2 cut(s) 940, 1422
Bsh1236I CGCG 1 cut(s) 869
Bsh1285I CGRYCG 1 cut(s) 1533
BshFI GGCC 5 cut(s) 54, 196, 230, 494, 1950
BsiEI CGRYCG 1 cut(s) 1533
BsiHKAI GWGCWC 2 cut(s) 681, 1170
BsiHKCI CYCGRG 1 cut(s) 1320
BsiSI CCGG 3 cut(s) 146, 711, 945
BslFI GGGAC 4 cut(s) 560, 981, 1400, 2109
BsmAI GTCTC 4 cut(s) 318, 2070, 2178, 2286
BsmFI GGGAC 4 cut(s) 560, 981, 1400, 2109
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 5 cut(s) 54, 196, 230, 494, 1950
BsoBI CYCGRG 1 cut(s) 1320
Bsp119I TTCGAA 2 cut(s) 331, 1368
Bsp1286I GDGCHC 2 cut(s) 681, 1170
Bsp1407I TGTACA 2 cut(s) 1050, 2238
Bsp19I CCATGG 1 cut(s) 2541
Bsp68I TCGCGA 1 cut(s) 869
BspACI CCGC 6 cut(s) 836, 948, 1274, 2073, 2093, 2154
BspANI GGCC 5 cut(s) 54, 196, 230, 494, 1950
BspCNI CTCAG 6 cut(s) 476, 862, 967, 1189, 2134, 2499
BspFNI CGCG 1 cut(s) 869
BspHI TCATGA 1 cut(s) 1861
BspLI GGNNCC 6 cut(s) 6, 493, 969, 1527, 2124, 2125
BspMAI CTGCAG 1 cut(s) 2436
BspMI ACCTGC 4 cut(s) 466, 912, 1316, 2309
BspOI GCTAGC 1 cut(s) 996
BspPI GGATC 4 cut(s) 739, 1252, 1557, 2407
BspQI GCTCTTC 1 cut(s) 669
BspT104I TTCGAA 2 cut(s) 331, 1368
BspTI CTTAAG 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 2073
BsrDI GCAATG 1 cut(s) 1807
BsrFI RCCGGY 2 cut(s) 710, 944
BsrGI TGTACA 2 cut(s) 1050, 2238
BsrI ACTGG 4 cut(s) 498, 2063, 2410, 2514
BssAI RCCGGY 2 cut(s) 710, 944
BssECI CCNNGG 9 cut(s) 390, 577, 690, 857, 999, 1203, 1907, 1945, 2541
BssNAI GTATAC 1 cut(s) 1041
BssSI CACGAG 2 cut(s) 232, 1464
BssT1I CCWWGG 6 cut(s) 390, 690, 999, 1203, 1945, 2541
Bst1107I GTATAC 1 cut(s) 1041
Bst2BI CACGAG 2 cut(s) 232, 1464
Bst2UI CCWGG 5 cut(s) 118, 579, 858, 1811, 1908
Bst4CI ACNGT 2 cut(s) 1436, 1927
Bst6I CTCTTC 4 cut(s) 321, 669, 1382, 1425
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 1877
BstAUI TGTACA 2 cut(s) 1050, 2238
BstBAI YACGTR 1 cut(s) 1038
BstBI TTCGAA 2 cut(s) 331, 1368
BstC8I GCNNGC 8 cut(s) 712, 946, 994, 1271, 1958, 1962, 2466, 2538
BstDSI CCRYGG 1 cut(s) 2541
BstENI CCTNNNNNAGG 3 cut(s) 59, 1566, 1965
BstF5I GGATG 5 cut(s) 55, 197, 310, 403, 1822
BstFNI CGCG 1 cut(s) 869
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 519, 2490
BstMAI GTCTC 4 cut(s) 318, 2070, 2178, 2286
BstMCI CGRYCG 1 cut(s) 1533
BstMWI GCNNNNNNNGC 8 cut(s) 707, 887, 1349, 1594, 1797, 1877, 2090, 2138
BstNI CCWGG 5 cut(s) 118, 579, 858, 1811, 1908
BstNSI RCATGY 2 cut(s) 1273, 1880
BstPAI GACNNNNGTC 1 cut(s) 2298
BstSCI CCNGG 5 cut(s) 116, 577, 856, 1809, 1906
BstSFI CTRYAG 1 cut(s) 2432
BstSNI TACGTA 1 cut(s) 1038
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 2 cut(s) 241, 719
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 1307
BstYI RGATCY 1 cut(s) 1307
BstZ17I GTATAC 1 cut(s) 1041
Bsu36I CCTNAGG 1 cut(s) 9
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 5 cut(s) 54, 196, 230, 494, 1950
BtgI CCRYGG 1 cut(s) 2541
BtgZI GCGATG 3 cut(s) 629, 1071, 2065
BtrI CACGTC 1 cut(s) 2471
BtsCI GGATG 5 cut(s) 55, 197, 310, 403, 1822
BtsI GCAGTG 1 cut(s) 1798
BtsIMutI CAGTG 3 cut(s) 505, 1798, 2070
BtuMI TCGCGA 1 cut(s) 869
BveI ACCTGC 4 cut(s) 466, 912, 1316, 2309
Cac8I GCNNGC 8 cut(s) 712, 946, 994, 1271, 1958, 1962, 2466, 2538
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 1861
CfoI GCGC 2 cut(s) 519, 2490
Cfr10I RCCGGY 2 cut(s) 710, 944
Cfr13I GGNCC 7 cut(s) 492, 950, 968, 1469, 1526, 1949, 2123
Csp6I GTAC 7 cut(s) 812, 1007, 1051, 1062, 1332, 1874, 2239
CviQI GTAC 7 cut(s) 812, 1007, 1051, 1062, 1332, 1874, 2239
DraI TTTAAA 2 cut(s) 1086, 1783
EaeI YGGCCR 1 cut(s) 194
Eam1104I CTCTTC 4 cut(s) 321, 669, 1382, 1425
EarI CTCTTC 4 cut(s) 321, 669, 1382, 1425
Ecl136II GAGCTC 1 cut(s) 679
Eco105I TACGTA 1 cut(s) 1038
Eco130I CCWWGG 6 cut(s) 390, 690, 999, 1203, 1945, 2541
Eco24I GRGCYC 1 cut(s) 681
Eco32I GATATC 2 cut(s) 295, 2164
Eco47I GGWCC 5 cut(s) 950, 968, 1469, 1526, 2123
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 3 cut(s) 1812, 2094, 2415
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 1320
EcoICRI GAGCTC 1 cut(s) 679
EcoNI CCTNNNNNAGG 3 cut(s) 59, 1566, 1965
EcoO109I RGGNCCY 3 cut(s) 492, 968, 2123
EcoRII CCWGG 5 cut(s) 116, 577, 856, 1809, 1906
EcoRV GATATC 2 cut(s) 295, 2164
EcoT14I CCWWGG 6 cut(s) 390, 690, 999, 1203, 1945, 2541
EcoT22I ATGCAT 1 cut(s) 1230
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 6 cut(s) 390, 690, 999, 1203, 1945, 2541
FalI AAGNNNNNCTT 2 cut(s) 2357, 2389
FaqI GGGAC 4 cut(s) 560, 981, 1400, 2109
FauI CCCGC 1 cut(s) 2086
FauNDI CATATG 2 cut(s) 795, 1995
FbaI TGATCA 2 cut(s) 28, 1579
FblI GTMKAC 1 cut(s) 1040
Fnu4HI GCNGC 3 cut(s) 255, 708, 1274
FokI GGATG 5 cut(s) 62, 204, 317, 410, 1809
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 3 cut(s) 255, 708, 1274
FspBI CTAG 5 cut(s) 23, 993, 1065, 1977, 2133
FspI TGCGCA 1 cut(s) 2489
GlaI GCGC 2 cut(s) 518, 2489
GluI GCNGC 3 cut(s) 255, 708, 1274
GsuI CTGGAG 3 cut(s) 481, 1458, 1890
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 5 cut(s) 54, 196, 230, 494, 1950
HapII CCGG 3 cut(s) 146, 711, 945
HhaI GCGC 2 cut(s) 519, 2490
Hin6I GCGC 2 cut(s) 517, 2488
HinP1I GCGC 2 cut(s) 517, 2488
HincII GTYRAC 3 cut(s) 208, 439, 1974
HindII GTYRAC 3 cut(s) 208, 439, 1974
HindIII AAGCTT 2 cut(s) 784, 1954
HpaII CCGG 3 cut(s) 146, 711, 945
Hpy166II GTNNAC 7 cut(s) 208, 381, 439, 812, 1041, 1051, 1974
Hpy8I GTNNAC 7 cut(s) 208, 381, 439, 812, 1041, 1051, 1974
Hpy99I CGWCG 1 cut(s) 1428
HpyCH4III ACNGT 2 cut(s) 1436, 1927
HpyCH4IV ACGT 6 cut(s) 741, 1037, 2055, 2328, 2470, 2526
HpyCH4V TGCA 9 cut(s) 475, 701, 921, 1228, 1343, 1403, 2363, 2434, 2468
HpyF10VI GCNNNNNNNGC 8 cut(s) 707, 887, 1349, 1594, 1797, 1877, 2090, 2138
HpySE526I ACGT 6 cut(s) 741, 1037, 2055, 2328, 2470, 2526
HspAI GCGC 2 cut(s) 517, 2488
KflI GGGWCCC 1 cut(s) 2123
KroI GCCGGC 2 cut(s) 710, 944
KroNI GCCGGC 2 cut(s) 712, 946
Ksp22I TGATCA 2 cut(s) 28, 1579
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 6 cut(s) 10, 684, 799, 1165, 1813, 2461
Lsp1109I GCAGC 2 cut(s) 241, 719
LweI GCATC 2 cut(s) 606, 1147
MaeI CTAG 5 cut(s) 23, 993, 1065, 1977, 2133
MaeII ACGT 6 cut(s) 741, 1037, 2055, 2328, 2470, 2526
MaeIII GTNAC 7 cut(s) 184, 553, 1619, 1669, 1921, 2056, 2522
MbiI CCGCTC 1 cut(s) 2073
MflI RGATCY 1 cut(s) 1307
MhlI GDGCHC 2 cut(s) 681, 1170
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 9 cut(s) 76, 215, 529, 696, 831, 1363, 2015, 2103, 2175
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 5 cut(s) 320, 455, 1254, 1898, 2042
MmeI TCCRAC 2 cut(s) 1553, 2322
Mox20I TGGCCA 1 cut(s) 196
Mph1103I ATGCAT 1 cut(s) 1230
MroNI GCCGGC 2 cut(s) 710, 944
MscI TGGCCA 1 cut(s) 196
Msp20I TGGCCA 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 3 cut(s) 146, 711, 945
MspR9I CCNGG 5 cut(s) 118, 579, 858, 1811, 1908
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 5 cut(s) 118, 579, 858, 1811, 1908
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 8 cut(s) 707, 887, 1349, 1594, 1797, 1877, 2090, 2138
NaeI GCCGGC 2 cut(s) 712, 946
NcoI CCATGG 1 cut(s) 2541
NdeI CATATG 2 cut(s) 795, 1995
NgoMIV GCCGGC 2 cut(s) 710, 944
NheI GCTAGC 1 cut(s) 992
NlaIV GGNNCC 6 cut(s) 6, 493, 969, 1527, 2124, 2125
NmuCI GTSAC 4 cut(s) 1619, 1669, 1921, 2522
NruI TCGCGA 1 cut(s) 869
NsbI TGCGCA 1 cut(s) 2489
NsiI ATGCAT 1 cut(s) 1230
NspI RCATGY 2 cut(s) 1273, 1880
NspV TTCGAA 2 cut(s) 331, 1368
PaeI GCATGC 1 cut(s) 1273
PagI TCATGA 1 cut(s) 1861
PaqCI CACCTGC 1 cut(s) 1316
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 1432
PctI GAATGC 1 cut(s) 877
PdiI GCCGGC 2 cut(s) 712, 946
PfeI GAWTC 7 cut(s) 237, 340, 593, 1496, 1535, 2011, 2345
PkrI GCNGC 3 cut(s) 256, 709, 1275
PleI GAGTC 5 cut(s) 319, 455, 1253, 1897, 2041
PpsI GAGTC 5 cut(s) 319, 455, 1253, 1897, 2041
Ppu21I YACGTR 1 cut(s) 1038
PpuMI RGGWCCY 2 cut(s) 968, 2123
PshAI GACNNNNGTC 1 cut(s) 2298
Psp124BI GAGCTC 1 cut(s) 681
Psp1406I AACGTT 1 cut(s) 2328
Psp5II RGGWCCY 2 cut(s) 968, 2123
Psp6I CCWGG 5 cut(s) 116, 577, 856, 1809, 1906
PspGI CCWGG 5 cut(s) 116, 577, 856, 1809, 1906
PspN4I GGNNCC 6 cut(s) 6, 493, 969, 1527, 2124, 2125
PspPI GGNCC 7 cut(s) 492, 950, 968, 1469, 1526, 1949, 2123
PspPPI RGGWCCY 2 cut(s) 968, 2123
PstI CTGCAG 1 cut(s) 2436
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1307
RruI TCGCGA 1 cut(s) 869
RsaI GTAC 7 cut(s) 813, 1008, 1052, 1063, 1333, 1875, 2240
RsaNI GTAC 7 cut(s) 812, 1007, 1051, 1062, 1332, 1874, 2239
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 669
SatI GCNGC 3 cut(s) 255, 708, 1274
Sau96I GGNCC 7 cut(s) 492, 950, 968, 1469, 1526, 1949, 2123
SchI GAGTC 5 cut(s) 320, 455, 1254, 1898, 2042
ScrFI CCNGG 5 cut(s) 118, 579, 858, 1811, 1908
SduI GDGCHC 2 cut(s) 681, 1170
SfaNI GCATC 2 cut(s) 606, 1147
SfcI CTRYAG 1 cut(s) 2432
SfuI TTCGAA 2 cut(s) 331, 1368
SinI GGWCC 5 cut(s) 950, 968, 1469, 1526, 2123
SmlI CTYRAG 7 cut(s) 44, 56, 104, 1484, 1518, 2474, 2496
SmoI CTYRAG 7 cut(s) 44, 56, 104, 1484, 1518, 2474, 2496
SnaBI TACGTA 1 cut(s) 1038
SpeI ACTAGT 1 cut(s) 1976
SphI GCATGC 1 cut(s) 1273
Sse9I AATT 9 cut(s) 76, 215, 529, 696, 831, 1363, 2015, 2103, 2175
SsiI CCGC 6 cut(s) 836, 948, 1274, 2073, 2093, 2154
SspMI CTAG 5 cut(s) 23, 993, 1065, 1977, 2133
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 5 cut(s) 116, 577, 856, 1809, 1906
StyI CCWWGG 6 cut(s) 390, 690, 999, 1203, 1945, 2541
TaaI ACNGT 2 cut(s) 1436, 1927
TaiI ACGT 6 cut(s) 744, 1040, 2058, 2331, 2473, 2529
TaqI TCGA 8 cut(s) 331, 527, 672, 1368, 1426, 1635, 1743, 2182
TaqII GACCGA 1 cut(s) 1547
TasI AATT 9 cut(s) 76, 215, 529, 696, 831, 1363, 2015, 2103, 2175
TatI WGTACW 5 cut(s) 811, 1006, 1050, 1873, 2238
TauI GCSGC 1 cut(s) 1276
TfiI GAWTC 7 cut(s) 237, 340, 593, 1496, 1535, 2011, 2345
TscAI CASTG 3 cut(s) 505, 1798, 2070
TseFI GTSAC 4 cut(s) 1619, 1669, 1921, 2522
TseI GCWGC 2 cut(s) 254, 707
Tsp45I GTSAC 4 cut(s) 1619, 1669, 1921, 2522
TspGWI ACGGA 3 cut(s) 259, 1257, 1521
TspRI CASTG 3 cut(s) 505, 1798, 2070
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 5 cut(s) 950, 968, 1469, 1526, 2123
XagI CCTNNNNNAGG 3 cut(s) 59, 1566, 1965
XapI RAATTY 1 cut(s) 2103
XceI RCATGY 2 cut(s) 1273, 1880
XcmI CCANNNNNNNNNTGG 2 cut(s) 985, 2264
XmiI GTMKAC 1 cut(s) 1040
XspI CTAG 5 cut(s) 23, 993, 1065, 1977, 2133
Zsp2I ATGCAT 1 cut(s) 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.