Rh7DG393500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000153
Physical Location & Seq
Reverse (-)
53934640 .. 53956296
21657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG393500.1

Sequence Viewer

Length: 594 bp
ATGGCTAAGCTGTCCCTCTATCTTCGTTACATGACCTTTACCCGAATCACTGTAGCTGAACATCTCGAGAGCTTTGTTTTGTTTGCAATGGCTCAAACGTCTGAGTCTTCTCAGCCTATTGAACTTCGTGATCACCACTTCTCTCTGGAGGATGGTCTCATTCCTACTTCCACCGCGGGGGGTTATGAAAGTAGCTCAGAGGAGGCATCTCATGAATTTTCTGGGCACTGTGTTTCTCCCAAGTTCATATCCAGCTTCGAGGTACAACAGGAAGAGTTTGAAGAGGCCCTTGTTGGAGCTGGAGTGAAGATTTCATTGTTTATTTCTGGCTTTTGTGAGGTTTACAAACATGACATTTGCCTTCGCCATGTGGTGCGAAGATGGAGGTTTATTCAGACTGGTGGGACTAAGTTGTGTCTGAAAGCCAATAGTGAGAACAAAAGACTACTCCGCAGTAACACTGTCTTGGGTGTCATGTCTAGACTTAACCTTCCCTATACTGAGGTATATTCGAATGGCATGAAGTGTGTGGTTGGTCATCTCAAGGGTGGCAAAGGTGGAGGTGATTCCGAAGTAGAGTTGCCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.86

Weight (kDa)

6.24

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 174, 176, 451
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 122, 281
AluBI AGCT 7 cut(s) 10, 56, 72, 195, 255, 299, 587
AluI AGCT 7 cut(s) 10, 56, 72, 195, 255, 299, 587
Alw26I GTCTC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 125, 575
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 574
BccI CCATC 2 cut(s) 146, 375
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 588
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 167, 321
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 4 cut(s) 93, 125, 210, 492
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 130
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 3 cut(s) 174, 176, 451
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 4 cut(s) 94, 124, 209, 493
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 52, 230, 463
Bst6I CTCTTC 2 cut(s) 267, 276
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 6 cut(s) 6, 102, 111, 196, 408, 501
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 48, 226, 459
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 286
Cfr42I CCGCGG 1 cut(s) 177
Csp6I GTAC 1 cut(s) 263
CviAII CATG 6 cut(s) 31, 212, 350, 368, 475, 520
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 6 cut(s) 6, 102, 111, 196, 408, 501
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 267, 276
EarI CTCTTC 2 cut(s) 267, 276
Eco31I GGTCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 286
FaeI CATG 6 cut(s) 34, 215, 353, 371, 478, 523
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 418
FatI CATG 6 cut(s) 30, 211, 349, 367, 474, 519
FauI CCCGC 1 cut(s) 169
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 1 cut(s) 480
GluI GCNGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 167, 321
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 6 cut(s) 34, 215, 353, 371, 478, 523
HinfI GANTC 3 cut(s) 45, 104, 566
HphI GGTGA 2 cut(s) 125, 575
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 5 cut(s) 103, 199, 396, 420, 571
Hpy188III TCNNGA 6 cut(s) 65, 67, 128, 146, 212, 480
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 371, 500
HpyCH4III ACNGT 3 cut(s) 52, 230, 463
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 6 cut(s) 6, 102, 111, 196, 408, 501
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 6 cut(s) 34, 215, 353, 371, 478, 523
Ksp22I TGATCA 1 cut(s) 130
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 7 cut(s) 131, 207, 254, 265, 285, 312, 384
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 26, 455
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 6 cut(s) 14, 99, 284, 293, 319, 390
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 274
MseI TTAA 1 cut(s) 486
MspA1I CMGCKG 2 cut(s) 176, 587
MvnI CGCG 1 cut(s) 176
NdeII GATC 1 cut(s) 130
NlaIII CATG 6 cut(s) 34, 215, 353, 371, 478, 523
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 65
PagI TCATGA 1 cut(s) 211
PfeI GAWTC 2 cut(s) 45, 566
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacII CCGCGG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 512
SgrBI CCGCGG 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 65, 542
SmoI CTYRAG 2 cut(s) 65, 542
Sse9I AATT 1 cut(s) 215
SsiI CCGC 3 cut(s) 174, 176, 451
SspMI CTAG 1 cut(s) 480
TaaI ACNGT 3 cut(s) 52, 230, 463
TaiI ACGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 66, 258, 512
TasI AATT 1 cut(s) 215
TfiI GAWTC 2 cut(s) 45, 566
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 3 cut(s) 55, 233, 466
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 5 cut(s) 201, 228, 235, 303, 536
TspRI CASTG 3 cut(s) 55, 233, 466
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.