Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000153

Physical Location & Seq

Genomic Coordinates Forward (+)

39041456 .. 39044453

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGAAGAAGGTTAAGAAGAAGGCTAGAGCTTCTCAAAAGGATAAGTGGGTTCCATCTGATTCCCGGAAGAAGGTTGCCGAACCAAGCAACCCAAGCGTTAAGGATGATGGAGTTTCAGTTGCAAAAGTGAGAAAAGCTTGTCCTCACATTGACAAAGGTGTTGATTTGAATAAATTGCAAGCTAAAATTGGGTCTTCAGCAGTTATTAGGTGTGAAGATTGTAAGGAAGGTGCCATTGATAGGAAGGGAGTTAATAGAAAGGGCAAACATGCTAAGAAGAAAGGACGTGCTAATTCTAAATCTGAGTCAAAATCCGTTTGGCTTTGTTTAGAATGCGGTCATTATGCTTGTGGTGGGGTTGGACTTCCAATAACCCCTCAATGCCACGCAGTTCGGCATGCAAGTCAAACTCGTCACCCATTGGTGGTGCAGTTTGAAAACCCACAGTTGCGATGGTGCTTCCAGTGCAGCACACTTATTACCATTGATAAGACGGGGGAGAATGGTGAAGAAAAAGATGTCTTTTCTGATGTTGTGAAATTAATTAAGGGTCATTCGTCGGAGGACTCATCAGGTGATGTCAAGGATGTATGGTTTGGTAGTGGCAGTGTAACAAGAAAAATCAAATTAGCTAGCAATACATCAAGCCTTTTGGATGGAACAGGAGGTTATGTAGTAACAAGCAAAATCAAATTAGCTAGCAAGACATCAAGCCTTTTGGATGGAAGAGGAGGTTATGTAGTAAGACGCTTAGCTAATCTTGATTGCGGGGTTACTTCTCAACCCATTCAACTTCGTGACCACCACTTCTCACTTGAGGAAGATCACAGTAATGGTGAAGACATTGGTGCCAATGCTTTAATAAGTAAATCTGCCGTAGGTGTTGGTCTTCATGAAGGTAACCATAACGAGCAGGATGGATCAGTCTTACTGGGAATTGGAGGGACCGCGCTTGAGCTTCACCTTCCTAAGATAGCACTAGGAGGCAATAGTGTCAGTGTTTCAAACTCAATAGGTGGAGGTTCTGTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

345

Amino Acids

36.77

Weight (kDa)

9.23

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	72 - 162	1.7e-13	Zn-finger in ubiquitin-hydrolases and other protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis	RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata	RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora	Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa	Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha	Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana	Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 851
AccII	CGCG	1 cut(s)	953
AciI	CCGC	3 cut(s)	339, 771, 951
AclWI	GGATC	1 cut(s)	931
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	73, 243, 427
AgsI	TTSAA	4 cut(s)	172, 440, 794, 1008
AjiI	CACGTC	1 cut(s)	290
AluBI	AGCT	7 cut(s)	32, 140, 185, 635, 701, 758, 961
AluI	AGCT	7 cut(s)	32, 140, 185, 635, 701, 758, 961
AlwI	GGATC	1 cut(s)	931
ApeKI	GCWGC	1 cut(s)	471
AseI	ATTAAT	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	1 cut(s)	948
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	5 cut(s)	410, 521, 590, 851, 956
AsuNHI	GCTAGC	2 cut(s)	635, 701
AvaII	GGWCC	1 cut(s)	948
BanI	GGYRCC	2 cut(s)	233, 851
BbsI	GAAGAC	3 cut(s)	189, 849, 884
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	6 cut(s)	64, 104, 450, 653, 719, 914
BceAI	ACGGC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	67
BfaI	CTAG	4 cut(s)	27, 636, 702, 983
BisI	GCNGC	1 cut(s)	472
BlpI	GCTNAGC	1 cut(s)	754
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	948
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	4 cut(s)	54, 235, 853, 949
BmrFI	CCNGG	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	944
BmtI	GCTAGC	2 cut(s)	639, 705
BmuI	ACTGGG	1 cut(s)	944
BpiI	GAAGAC	3 cut(s)	189, 849, 884
Bpu1102I	GCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	2 cut(s)	839, 977
BpuMI	CCSGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	7 cut(s)	105, 135, 660, 690, 726, 756, 1014
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 243, 427
Bse1I	ACTGG	2 cut(s)	466, 939
BseGI	GGATG	5 cut(s)	112, 595, 664, 730, 925
BseLI	CCNNNNNNNGG	3 cut(s)	73, 243, 427
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	466, 939
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	1 cut(s)	483
BsgI	GTGCAG	2 cut(s)	452, 490
Bsh1236I	CGCG	1 cut(s)	953
BshNI	GGYRCC	2 cut(s)	233, 851
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	3 cut(s)	73, 243, 427
BsmFI	GGGAC	1 cut(s)	961
BsmI	GAATGC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	826, 923
Bsp1720I	GCTNAGC	1 cut(s)	754
BspACI	CCGC	3 cut(s)	339, 771, 951
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	953
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	4 cut(s)	54, 235, 853, 949
BspOI	GCTAGC	2 cut(s)	639, 705
BspPI	GGATC	1 cut(s)	931
BspT107I	GGYRCC	2 cut(s)	233, 851
BsrI	ACTGG	2 cut(s)	466, 939
BssMI	GATC	2 cut(s)	826, 923
Bst4CI	ACNGT	2 cut(s)	450, 833
Bst6I	CTCTTC	1 cut(s)	724
BstC8I	GCNNGC	4 cut(s)	183, 402, 637, 703
BstDEI	CTNAG	4 cut(s)	276, 306, 754, 972
BstEII	GGTNACC	1 cut(s)	902
BstF5I	GGATG	5 cut(s)	112, 595, 664, 730, 925
BstFNI	CGCG	1 cut(s)	953
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	2 cut(s)	829, 926
BstMBI	GATC	2 cut(s)	826, 923
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 468
BstNSI	RCATGY	2 cut(s)	275, 404
BstPI	GGTNACC	1 cut(s)	902
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	953
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	3 cut(s)	189, 849, 884
BtgZI	GCGATG	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	112, 595, 664, 730, 925
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	3 cut(s)	473, 616, 1006
Cac8I	GCNNGC	4 cut(s)	183, 402, 637, 703
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	1 cut(s)	955
Cfr13I	GGNCC	1 cut(s)	948
CseI	GACGC	1 cut(s)	759
CviAII	CATG	3 cut(s)	272, 401, 896
DdeI	CTNAG	4 cut(s)	276, 306, 754, 972
DpnI	GATC	2 cut(s)	828, 925
DpnII	GATC	2 cut(s)	826, 923
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	948
Eco57I	CTGAAG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	902
EcoO65I	GGTNACC	1 cut(s)	902
FaeI	CATG	3 cut(s)	275, 404, 899
FaiI	YATR	8 cut(s)	273, 348, 402, 595, 675, 741, 897, 909
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	3 cut(s)	271, 400, 895
FauI	CCCGC	1 cut(s)	764
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	5 cut(s)	119, 602, 671, 737, 932
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	4 cut(s)	27, 636, 702, 983
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	1 cut(s)	472
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	3 cut(s)	275, 404, 899
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	3 cut(s)	62, 308, 569
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	5 cut(s)	410, 521, 590, 851, 956
Hpy188I	TCNGA	4 cut(s)	61, 307, 532, 565
Hpy188III	TCNNGA	3 cut(s)	764, 800, 896
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	7 cut(s)	4, 16, 67, 224, 241, 893, 977
HpyCH4III	ACNGT	2 cut(s)	450, 833
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	5 cut(s)	125, 181, 404, 433, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 468
HpyF3I	CTNAG	4 cut(s)	276, 306, 754, 972
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	275, 404, 899
HspAI	GCGC	1 cut(s)	953
Kzo9I	GATC	2 cut(s)	826, 923
LpnPI	CCDG	6 cut(s)	80, 479, 561, 651, 902, 920
Lsp1109I	GCAGC	1 cut(s)	483
MaeI	CTAG	4 cut(s)	27, 636, 702, 983
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	6 cut(s)	416, 613, 679, 775, 800, 902
MalI	GATC	2 cut(s)	828, 925
MboI	GATC	2 cut(s)	826, 923
MluCI	AATT	8 cut(s)	176, 189, 295, 542, 546, 629, 695, 939
MlyI	GAGTC	2 cut(s)	317, 563
MmeI	TCCRAC	2 cut(s)	343, 543
MseI	TTAA	6 cut(s)	15, 102, 255, 545, 549, 863
MslI	CAYNNNNRTG	1 cut(s)	834
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	1 cut(s)	953
MwoI	GCNNNNNNNGC	2 cut(s)	96, 468
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	826, 923
NheI	GCTAGC	2 cut(s)	635, 701
NlaIII	CATG	3 cut(s)	275, 404, 899
NlaIV	GGNNCC	4 cut(s)	54, 235, 853, 949
NmuCI	GTSAC	2 cut(s)	416, 800
NspI	RCATGY	2 cut(s)	275, 404
PacI	TTAATTAA	1 cut(s)	549
PaeI	GCATGC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	895
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	473
PleI	GAGTC	2 cut(s)	316, 563
PpsI	GAGTC	2 cut(s)	316, 563
PshBI	ATTAAT	1 cut(s)	545
PspEI	GGTNACC	1 cut(s)	902
PspN4I	GGNNCC	4 cut(s)	54, 235, 853, 949
PspPI	GGNCC	1 cut(s)	948
RseI	CAYNNNNRTG	1 cut(s)	834
SaqAI	TTAA	6 cut(s)	15, 102, 255, 545, 549, 863
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	2 cut(s)	826, 923
Sau96I	GGNCC	1 cut(s)	948
SchI	GAGTC	2 cut(s)	317, 563
ScrFI	CCNGG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	2 cut(s)	818, 956
SmoI	CTYRAG	2 cut(s)	818, 956
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	8 cut(s)	176, 189, 295, 542, 546, 629, 695, 939
SsiI	CCGC	3 cut(s)	339, 771, 951
SspMI	CTAG	4 cut(s)	27, 636, 702, 983
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	450, 833
TaiI	ACGT	1 cut(s)	292
TasI	AATT	8 cut(s)	176, 189, 295, 542, 546, 629, 695, 939
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	6 cut(s)	15, 102, 255, 545, 549, 863
Tru9I	TTAA	6 cut(s)	15, 102, 255, 545, 549, 863
TscAI	CASTG	3 cut(s)	473, 616, 1006
TseFI	GTSAC	2 cut(s)	416, 800
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	2 cut(s)	416, 800
TspDTI	ATGAA	2 cut(s)	884, 912
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	473, 616, 1006
VpaK11BI	GGWCC	1 cut(s)	948
VspI	ATTAAT	1 cut(s)	545
XceI	RCATGY	2 cut(s)	275, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XspI	CTAG	4 cut(s)	27, 636, 702, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.