Rh1DG275600

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000153
Physical Location & Seq
Reverse (-)
49608575 .. 49620273
11699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG275600.1

Sequence Viewer

Length: 1395 bp
ATGAAGCGTGTGGTCGGTCACCTCAAGGGTGGCAAAAGTGGAGATGATTCTGAAGTAGAGTTGCCAGCTGCCGGAACGGAGAAAGGTAGCAAGAGTGCCACAAAGGGTAAAGTCAGGGCTTCCGAGGATGGGGGGGAAAGTAAAAGGAAGGTTTGCCGTTTCAAACCTAAGGTGGCAAAAGATCGTATCCCTCCTCCAGTAGTCAAGAGTGCCTTTGGTGTTAAAGTGATACTGCCATCGAGTTTGGCTTGTGAAAAAGGGAAGAAGAGGAAAGCTACTTCTATCCTAAGACCGAGTGAGGTTACTAAGAGGAAGGTTGCAGATGATGCCTCACCTGCTATCCTTAGGCGGAGTTCTCGTGTGGCCAACATGAACTTTTCTAAACGTAAATCGTCATCCAAGGGTGATGTTTATGTTGATCTTAGTGATGGGCCAAGCGCCGACGGGGATGGTAGCCCTCTGAGTGATGAGGAGAATGAGTCTGATACTTATGAGGGAAAGACCCGCGATGACGGTAGCCAGGGTAATCCAACCGTAGCTTCAATGGAAGAGGATAGCTGCGAGGTTGAGTTGTTGCCTCGCAGGGAGCTCATGCTGCTATCTCGATGGAGAATCACGAGCATAATGTTAGTGGGATACGTGGCTGGTGCTCTAATGAAGGAATCTGCTGTAAATGTCGGTCCTTGTGTAGATAAACGTAACAAGCAGGCGCGCAAAGTCGACATCAGTATAAATGATTTGGTGAAAGAATCTGCTGTCGACGATAGTCTTTGCAAGGATGACCATAATGAGCGGATACGTAGTGGTGGATCATTTTTGTTGATAGTTGGAGGGACATCATTTGAACCCCATCTCCCTGAGAATGCACTGGGGGACGAAGGCGTTACTGCTGCAATCTTGGTCAGTATAGGGGTTCCGCTTAAGGATAAGATCGTCTCCCATCACTTGTCAGCCAGGGATGGCCGATTCGTCGTCGTTTTGGAGAAACCGTGCTATATTCAGTTCGAGTACTTGGTGTACTACGAGACCCGCATCACCGGAAAGCTGAGCTACGGCGCGATCACGGATCTGAAGGGCATTCAGGTACAAAGATTGTTCTTTTGGTTCGACGTGGATGAGATCAGGGTCGATTTGCCGCCGTCCGATAGTATTTACTTCACCGTTGGGATCATGAAGAAAAGCTCGATGTCGATCAGTTCCAGAATGTTCATTCTTGCCGGGACGGGCTTTCGGAAACAAAGGGAGGTGGAATCAGAAAGGATAGAGAAGATGCCGGAGGAACATGCAGCCGTGAACCTGCTTTCTAACTGTGCTCGAGGCTCGACATGTGCATTTGCTGTTGCATATGTGCTTAAAATAACATCACTGGCAGATTCATTGGCAGATATGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

464

Amino Acids

50.65

Weight (kDa)

8.7

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 309 - 394 1.1e-20 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 2 cut(s) 343, 1305
AccBSI CCGCTC 1 cut(s) 793
AccI GTMKAC 2 cut(s) 720, 759
AccII CGCG 3 cut(s) 507, 712, 1058
AciI CCGC 6 cut(s) 349, 505, 793, 917, 1030, 1136
AclWI GGATC 3 cut(s) 817, 1074, 1175
AcoI YGGCCR 2 cut(s) 363, 961
AcuI CTGAAG 2 cut(s) 72, 1091
AfaI GTAC 3 cut(s) 1010, 1019, 1086
AfiI CCNNNNNNNGG 2 cut(s) 71, 129
AflII CTTAAG 1 cut(s) 920
AflIII ACRYGT 1 cut(s) 1325
AgsI TTSAA 3 cut(s) 163, 543, 845
AjiI CACGTC 1 cut(s) 1111
AjnI CCWGG 2 cut(s) 519, 953
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
AluBI AGCT 8 cut(s) 68, 275, 539, 558, 589, 1045, 1050, 1182
AluI AGCT 8 cut(s) 68, 275, 539, 558, 589, 1045, 1050, 1182
Alw21I GWGCWC 3 cut(s) 591, 652, 1315
Alw26I GTCTC 2 cut(s) 940, 1019
AlwI GGATC 3 cut(s) 817, 1074, 1175
Ama87I CYCGRG 1 cut(s) 1314
AoxI GGCC 3 cut(s) 363, 431, 961
ApeKI GCWGC 5 cut(s) 68, 558, 595, 890, 1286
AspLEI GCGC 4 cut(s) 440, 712, 714, 1058
AspS9I GGNCC 2 cut(s) 431, 680
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 6 cut(s) 11, 324, 416, 754, 1027, 1150
AvaI CYCGRG 1 cut(s) 1314
AvaII GGWCC 1 cut(s) 680
AxyI CCTNAGG 2 cut(s) 168, 344
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 591
BauI CACGAG 2 cut(s) 357, 616
Bbv12I GWGCWC 3 cut(s) 591, 652, 1315
BbvI GCAGC 5 cut(s) 55, 545, 582, 877, 1298
BccI CCATC 8 cut(s) 122, 244, 422, 443, 600, 858, 948, 953
BceAI ACGGC 4 cut(s) 141, 1069, 1123, 1274
BciT130I CCWGG 2 cut(s) 521, 955
BciVI GTATCC 3 cut(s) 197, 629, 789
BcnI CCSGG 1 cut(s) 1219
BcoDI GTCTC 2 cut(s) 940, 1019
BfoI RGCGCY 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 920
BfuAI ACCTGC 2 cut(s) 343, 1305
BfuI GTATCC 3 cut(s) 197, 629, 789
BisI GCNGC 6 cut(s) 69, 559, 596, 891, 1136, 1287
BlpI GCTNAGC 1 cut(s) 1046
BlsI GCNGC 6 cut(s) 70, 560, 597, 892, 1137, 1288
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 3 cut(s) 521, 955, 1219
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 1314
BmgBI CACGTC 1 cut(s) 1111
BmgT120I GGNCC 2 cut(s) 431, 680
BmiI GGNNCC 1 cut(s) 915
BmrFI CCNGG 3 cut(s) 521, 955, 1219
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 3 cut(s) 316, 1041, 1260
BmuI ACTGGG 1 cut(s) 878
BoxI GACNNNNGTC 1 cut(s) 765
BpmI CTGGAG 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 1219
BsaAI YACGTR 2 cut(s) 640, 800
BsaBI GATNNNNATC 1 cut(s) 1190
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 4 cut(s) 123, 399, 520, 954
BsaWI WCCGGW 1 cut(s) 1037
BsaXI ACNNNNNCTCC 8 cut(s) 343, 373, 464, 494, 837, 867, 974, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 129
Bse1I ACTGG 3 cut(s) 197, 873, 1371
Bse21I CCTNAGG 2 cut(s) 168, 344
Bse8I GATNNNNATC 1 cut(s) 1190
BseBI CCWGG 2 cut(s) 521, 955
BseDI CCNNGG 4 cut(s) 123, 399, 520, 954
BseGI GGATG 6 cut(s) 133, 395, 454, 784, 964, 1120
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 2 cut(s) 71, 129
BseMII CTCAG 3 cut(s) 452, 849, 1037
BseNI ACTGG 3 cut(s) 197, 873, 1371
BsePI GCGCGC 1 cut(s) 710
BseRI GAGGAG 2 cut(s) 183, 485
BseXI GCAGC 5 cut(s) 55, 545, 582, 877, 1298
Bsh1236I CGCG 3 cut(s) 507, 712, 1058
BshFI GGCC 3 cut(s) 365, 433, 963
BsiHKAI GWGCWC 3 cut(s) 591, 652, 1315
BsiHKCI CYCGRG 1 cut(s) 1314
BsiSI CCGG 4 cut(s) 72, 1038, 1218, 1274
BslFI GGGAC 3 cut(s) 847, 887, 1234
BslI CCNNNNNNNGG 2 cut(s) 71, 129
BsmAI GTCTC 2 cut(s) 940, 1019
BsmBI CGTCTC 1 cut(s) 940
BsmFI GGGAC 3 cut(s) 847, 887, 1234
BsmI GAATGC 2 cut(s) 868, 1077
BsnI GGCC 3 cut(s) 365, 433, 963
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 1314
Bsp1286I GDGCHC 3 cut(s) 591, 652, 1315
Bsp143I GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
Bsp1720I GCTNAGC 1 cut(s) 1046
BspACI CCGC 6 cut(s) 349, 505, 793, 917, 1030, 1136
BspANI GGCC 3 cut(s) 365, 433, 963
BspCNI CTCAG 3 cut(s) 453, 850, 1038
BspFNI CGCG 3 cut(s) 507, 712, 1058
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 1 cut(s) 915
BspMI ACCTGC 2 cut(s) 343, 1305
BspPI GGATC 3 cut(s) 817, 1074, 1175
BspTI CTTAAG 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 1019
BsrBI CCGCTC 1 cut(s) 793
BsrI ACTGG 3 cut(s) 197, 873, 1371
BssECI CCNNGG 4 cut(s) 123, 399, 520, 954
BssHII GCGCGC 1 cut(s) 710
BssMI GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
BssSI CACGAG 2 cut(s) 357, 616
BssT1I CCWWGG 1 cut(s) 399
Bst2BI CACGAG 2 cut(s) 357, 616
Bst2UI CCWGG 2 cut(s) 521, 955
Bst4CI ACNGT 5 cut(s) 515, 535, 990, 1162, 1310
Bst6I CTCTTC 2 cut(s) 260, 543
BstAFI CTTAAG 1 cut(s) 920
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 2 cut(s) 640, 800
BstC8I GCNNGC 3 cut(s) 66, 708, 712
BstDEI CTNAG 8 cut(s) 168, 287, 306, 344, 422, 461, 858, 1046
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 6 cut(s) 133, 395, 454, 784, 964, 1120
BstFNI CGCG 3 cut(s) 507, 712, 1058
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 4 cut(s) 440, 712, 714, 1058
BstKTI GATC 9 cut(s) 184, 421, 812, 933, 1062, 1069, 1122, 1170, 1194
BstMAI GTCTC 2 cut(s) 940, 1019
BstMBI GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
BstMWI GCNNNNNNNGC 3 cut(s) 326, 335, 595
BstNI CCWGG 2 cut(s) 521, 955
BstNSI RCATGY 2 cut(s) 1286, 1329
BstPAI GACNNNNGTC 1 cut(s) 765
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 519, 953, 1217
BstSNI TACGTA 1 cut(s) 800
BstUI CGCG 3 cut(s) 507, 712, 1058
BstV1I GCAGC 5 cut(s) 55, 545, 582, 877, 1298
BstX2I RGATCY 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 1066
Bsu36I CCTNAGG 2 cut(s) 168, 344
BsuI GTATCC 3 cut(s) 197, 629, 789
BsuRI GGCC 3 cut(s) 365, 433, 963
BtgZI GCGATG 1 cut(s) 522
BtrI CACGTC 1 cut(s) 1111
BtsCI GGATG 6 cut(s) 133, 395, 454, 784, 964, 1120
BtsIMutI CAGTG 2 cut(s) 866, 1364
BveI ACCTGC 2 cut(s) 343, 1305
Cac8I GCNNGC 3 cut(s) 66, 708, 712
CciI TCATGA 1 cut(s) 1170
CfoI GCGC 4 cut(s) 440, 712, 714, 1058
Cfr13I GGNCC 2 cut(s) 431, 680
Csp6I GTAC 3 cut(s) 1009, 1018, 1085
CviAII CATG 5 cut(s) 370, 592, 1171, 1283, 1326
CviQI GTAC 3 cut(s) 1009, 1018, 1085
DdeI CTNAG 8 cut(s) 168, 287, 306, 344, 422, 461, 858, 1046
DpnI GATC 9 cut(s) 183, 420, 811, 932, 1061, 1068, 1121, 1169, 1193
DpnII GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
EaeI YGGCCR 2 cut(s) 363, 961
Eam1104I CTCTTC 2 cut(s) 260, 543
EarI CTCTTC 2 cut(s) 260, 543
EciI GGCGGA 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 589
Eco105I TACGTA 1 cut(s) 800
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 72, 1091
Eco81I CCTNAGG 2 cut(s) 168, 344
Eco88I CYCGRG 1 cut(s) 1314
Eco91I GGTNACC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 589
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 519, 953
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 940
FaeI CATG 5 cut(s) 373, 595, 1174, 1286, 1329
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 3 cut(s) 847, 887, 1234
FatI CATG 5 cut(s) 369, 591, 1170, 1282, 1325
FauI CCCGC 2 cut(s) 512, 1037
FauNDI CATATG 1 cut(s) 1345
FblI GTMKAC 2 cut(s) 720, 759
Fnu4HI GCNGC 6 cut(s) 69, 559, 596, 891, 1136, 1287
FokI GGATG 6 cut(s) 140, 382, 461, 791, 971, 1127
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 6 cut(s) 69, 559, 596, 891, 1136, 1287
GlaI GCGC 4 cut(s) 439, 711, 713, 1057
GluI GCNGC 6 cut(s) 69, 559, 596, 891, 1136, 1287
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 3 cut(s) 365, 433, 963
HapII CCGG 4 cut(s) 72, 1038, 1218, 1274
HhaI GCGC 4 cut(s) 440, 712, 714, 1058
Hin1II CATG 5 cut(s) 373, 595, 1174, 1286, 1329
Hin6I GCGC 4 cut(s) 438, 710, 712, 1056
HinP1I GCGC 4 cut(s) 438, 710, 712, 1056
HincII GTYRAC 2 cut(s) 721, 760
HindII GTYRAC 2 cut(s) 721, 760
HinfI GANTC 8 cut(s) 47, 479, 612, 662, 749, 966, 1250, 1373
HpaII CCGG 4 cut(s) 72, 1038, 1218, 1274
HphI GGTGA 6 cut(s) 11, 324, 416, 754, 1027, 1150
Hpy166II GTNNAC 4 cut(s) 721, 760, 1018, 1294
Hpy188I TCNGA 8 cut(s) 52, 124, 462, 484, 1071, 1144, 1233, 1255
Hpy188III TCNNGA 5 cut(s) 205, 603, 616, 1171, 1200
Hpy8I GTNNAC 4 cut(s) 721, 760, 1018, 1294
Hpy99I CGWCG 5 cut(s) 446, 764, 974, 977, 1112
HpyAV CCTTC 5 cut(s) 142, 307, 652, 872, 1066
HpyCH4III ACNGT 5 cut(s) 515, 535, 990, 1162, 1310
HpyCH4IV ACGT 5 cut(s) 385, 639, 697, 799, 1110
HpyCH4V TGCA 7 cut(s) 320, 774, 866, 893, 1286, 1331, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 335, 595
HpyF3I CTNAG 8 cut(s) 168, 287, 306, 344, 422, 461, 858, 1046
HpySE526I ACGT 5 cut(s) 385, 639, 697, 799, 1110
Hsp92II CATG 5 cut(s) 373, 595, 1174, 1286, 1329
HspAI GCGC 4 cut(s) 438, 710, 712, 1056
Kzo9I GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 5 cut(s) 55, 545, 582, 877, 1298
LweI GCATC 3 cut(s) 316, 1041, 1260
MaeII ACGT 5 cut(s) 385, 639, 697, 799, 1110
MaeIII GTNAC 4 cut(s) 17, 301, 698, 883
MalI GATC 9 cut(s) 183, 420, 811, 932, 1061, 1068, 1121, 1169, 1193
MbiI CCGCTC 1 cut(s) 793
MboI GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
MboII GAAGA 5 cut(s) 274, 277, 560, 1186, 1279
MflI RGATCY 1 cut(s) 1066
MhlI GDGCHC 3 cut(s) 591, 652, 1315
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 554, 808
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 3 cut(s) 222, 921, 1353
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 4 cut(s) 72, 1038, 1218, 1274
MspR9I CCNGG 3 cut(s) 521, 955, 1219
Mva1269I GAATGC 2 cut(s) 868, 1077
MvaI CCWGG 2 cut(s) 521, 955
MvnI CGCG 3 cut(s) 507, 712, 1058
MwoI GCNNNNNNNGC 3 cut(s) 326, 335, 595
NciI CCSGG 1 cut(s) 1219
NdeI CATATG 1 cut(s) 1345
NdeII GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
NlaIII CATG 5 cut(s) 373, 595, 1174, 1286, 1329
NlaIV GGNNCC 1 cut(s) 915
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 2 cut(s) 1286, 1329
PaeR7I CTCGAG 1 cut(s) 1314
PagI TCATGA 1 cut(s) 1170
PaqCI CACCTGC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 710
PciI ACATGT 1 cut(s) 1325
PctI GAATGC 2 cut(s) 868, 1077
PfeI GAWTC 7 cut(s) 47, 612, 662, 749, 966, 1250, 1373
PkrI GCNGC 6 cut(s) 70, 560, 597, 892, 1137, 1288
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Ppu21I YACGTR 2 cut(s) 640, 800
PscI ACATGT 1 cut(s) 1325
PshAI GACNNNNGTC 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 519, 953
PspEI GGTNACC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 519, 953
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 2 cut(s) 431, 680
PspXI VCTCGAGB 1 cut(s) 1314
PsuI RGATCY 1 cut(s) 1066
PteI GCGCGC 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 3 cut(s) 1010, 1019, 1086
RsaNI GTAC 3 cut(s) 1009, 1018, 1085
SacI GAGCTC 1 cut(s) 591
SalI GTCGAC 2 cut(s) 719, 758
SaqAI TTAA 3 cut(s) 222, 921, 1353
SatI GCNGC 6 cut(s) 69, 559, 596, 891, 1136, 1287
Sau3AI GATC 9 cut(s) 181, 418, 809, 930, 1059, 1066, 1119, 1167, 1191
Sau96I GGNCC 2 cut(s) 431, 680
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 3 cut(s) 521, 955, 1219
SduI GDGCHC 3 cut(s) 591, 652, 1315
SfaNI GCATC 3 cut(s) 316, 1041, 1260
Sfr274I CTCGAG 1 cut(s) 1314
SinI GGWCC 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 1314
SmlI CTYRAG 3 cut(s) 23, 920, 1314
SmoI CTYRAG 3 cut(s) 23, 920, 1314
SnaBI TACGTA 1 cut(s) 800
SsiI CCGC 6 cut(s) 349, 505, 793, 917, 1030, 1136
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 3 cut(s) 519, 953, 1217
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 5 cut(s) 515, 535, 990, 1162, 1310
TaiI ACGT 5 cut(s) 388, 642, 700, 802, 1113
TaqII GACCGA 3 cut(s) 5, 307, 668
TatI WGTACW 2 cut(s) 1008, 1017
TauI GCSGC 1 cut(s) 1138
TfiI GAWTC 7 cut(s) 47, 612, 662, 749, 966, 1250, 1373
Tru1I TTAA 3 cut(s) 222, 921, 1353
Tru9I TTAA 3 cut(s) 222, 921, 1353
TscAI CASTG 2 cut(s) 873, 1371
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 5 cut(s) 68, 558, 595, 890, 1286
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 6 cut(s) 17, 386, 671, 1187, 1198, 1365
TspGWI ACGGA 2 cut(s) 92, 1079
TspRI CASTG 2 cut(s) 873, 1371
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 1 cut(s) 680
XceI RCATGY 2 cut(s) 1286, 1329
XhoI CTCGAG 1 cut(s) 1314
XmiI GTMKAC 2 cut(s) 720, 759
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.