Rh2AG474800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000153
Physical Location & Seq
Forward (+)
69378627 .. 69380017
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG474800.1

Sequence Viewer

Length: 750 bp
ATGCTCTCAAATAGTCTCGGGAAGAAGGACTGTGTTGGCTCCCCTACATCAACGTTCTTGAGGTTTTGGGAGTTGCAGCGGTGCCAGTTCAGGAGGTTTATTCAGACTGGTGGAACTAGGTTGTGTCCGAAAGCCAATAGTGAGAACAAGAGACTACTTCGCAGTAACACTGTCATGGGTGTCATGTCTAGACTTAACCTTCCATATACTGAGGTATACTCGAATGGCATAGAACGTGTGGTTGGTCATCTTAAAGGTGGGGATGATTTAGAGGTGGACTTGACAAGAACAGAGGAGGGTGACAAGTGTGCAACAAAAGGCAAAGTCAGGCCTTCCGAGAATAGAGAAGAAAGTAAAAAGAAGGTTTGCCGCTTCAAACCTAAGGTGGCAAAGGATCGCATCCCTCCTCTAGTAGTCAAAAGTGCCTTTGGTGTTAGAGTGATACTGCCATCGAGTTTAGCTGATGGAAAATGGAAGAAAAGGAAAGCCGCTTCTTGCTCAAGACCTAGTGGAGCTACTAAGCAAAAGATTACAGTTGATGCCTCACCTGCTATCCGCAGGCTGAGCTCTCGCGTTGCTAACATGAGTTTTTCTAAACCTAAACAGTCGTCTAAGGGCGCTGCTCATGTTGATCTTAGTGACGCGCCAAGTGACGACATCGAAGGTAGCCCCCTTAGTGATAATGTCAGTACACATGAGGAGAATGAATCTGATACTTATGAGGGAGAGACCTGCGATAACAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.41

Weight (kDa)

9.51

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 2 cut(s) 556, 740
AccB1I GGYRCC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 573, 644
AciI CCGC 4 cut(s) 79, 370, 489, 556
AclI AACGTT 1 cut(s) 53
AclWI GGATC 1 cut(s) 402
AfaI GTAC 1 cut(s) 691
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 461, 515, 567
AluI AGCT 3 cut(s) 461, 515, 567
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 3 cut(s) 20, 145, 722
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 76, 620
AspLEI GCGC 2 cut(s) 620, 646
AsuHPI GGTGA 2 cut(s) 311, 537
AvaI CYCGRG 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 381
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 2 cut(s) 88, 607
BccI CCATC 2 cut(s) 457, 458
BcoDI GTCTC 3 cut(s) 20, 145, 722
BfaI CTAG 4 cut(s) 117, 189, 410, 507
BfoI RGCGCY 1 cut(s) 621
BfuAI ACCTGC 2 cut(s) 556, 740
BisI GCNGC 4 cut(s) 77, 370, 489, 621
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 4 cut(s) 78, 371, 490, 622
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 40, 83
BmsI GCATC 2 cut(s) 408, 529
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 79, 484
BsaI GGTCTC 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 85, 112
Bse21I CCTNAGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 268, 399
BseMII CTCAG 2 cut(s) 201, 554
BseNI ACTGG 2 cut(s) 85, 112
BseRI GAGGAG 3 cut(s) 308, 396, 713
BseXI GCAGC 2 cut(s) 88, 607
Bsh1236I CGCG 2 cut(s) 573, 644
BshFI GGCC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 17
BsmAI GTCTC 3 cut(s) 20, 145, 722
BsnI GGCC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 722
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 2 cut(s) 394, 631
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 4 cut(s) 79, 370, 489, 556
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 202, 555
BspFNI CGCG 2 cut(s) 573, 644
BspLI GGNNCC 2 cut(s) 40, 83
BspMI ACCTGC 2 cut(s) 556, 740
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 722
BsrI ACTGG 2 cut(s) 85, 112
BssMI GATC 2 cut(s) 394, 631
BssNAI GTATAC 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 5 cut(s) 32, 172, 535, 606, 743
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 7 cut(s) 210, 381, 519, 563, 612, 635, 674
BstF5I GGATG 2 cut(s) 268, 399
BstFNI CGCG 2 cut(s) 573, 644
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 620, 646
BstKTI GATC 2 cut(s) 397, 634
BstMAI GTCTC 3 cut(s) 20, 145, 722
BstMBI GATC 2 cut(s) 394, 631
BstMWI GCNNNNNNNGC 2 cut(s) 548, 564
BstUI CGCG 2 cut(s) 573, 644
BstV1I GCAGC 2 cut(s) 88, 607
BstZ17I GTATAC 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 268, 399
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 2 cut(s) 556, 740
Cac8I GCNNGC 1 cut(s) 560
CfoI GCGC 2 cut(s) 620, 646
CseI GACGC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 690
CviAII CATG 5 cut(s) 175, 184, 583, 626, 695
CviJI RGCY 9 cut(s) 39, 134, 331, 461, 488, 515, 562, 567, 669
CviKI_1 RGCY 9 cut(s) 39, 134, 331, 461, 488, 515, 562, 567, 669
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 7 cut(s) 210, 381, 519, 563, 612, 635, 674
DpnI GATC 2 cut(s) 396, 633
DpnII GATC 2 cut(s) 394, 631
Ecl136II GAGCTC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 567
Eco81I CCTNAGG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 569
FaeI CATG 5 cut(s) 178, 187, 586, 629, 698
FatI CATG 5 cut(s) 174, 183, 582, 625, 694
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 77, 370, 489, 621
FokI GGATG 2 cut(s) 275, 386
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 4 cut(s) 77, 370, 489, 621
FspBI CTAG 4 cut(s) 117, 189, 410, 507
GlaI GCGC 2 cut(s) 619, 645
GluI GCNGC 4 cut(s) 77, 370, 489, 621
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 1 cut(s) 331
HgaI GACGC 1 cut(s) 650
HhaI GCGC 2 cut(s) 620, 646
Hin1II CATG 5 cut(s) 178, 187, 586, 629, 698
Hin6I GCGC 2 cut(s) 618, 644
HinP1I GCGC 2 cut(s) 618, 644
HinfI GANTC 1 cut(s) 707
HphI GGTGA 2 cut(s) 311, 537
Hpy166II GTNNAC 3 cut(s) 217, 277, 692
Hpy188I TCNGA 4 cut(s) 105, 129, 337, 712
Hpy188III TCNNGA 5 cut(s) 19, 58, 91, 189, 501
Hpy8I GTNNAC 3 cut(s) 217, 277, 692
HpyAV CCTTC 5 cut(s) 19, 209, 342, 355, 656
HpyCH4III ACNGT 5 cut(s) 32, 172, 535, 606, 743
HpyCH4IV ACGT 2 cut(s) 53, 235
HpyCH4V TGCA 2 cut(s) 76, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 564
HpyF3I CTNAG 7 cut(s) 210, 381, 519, 563, 612, 635, 674
HpySE526I ACGT 2 cut(s) 53, 235
Hsp92II CATG 5 cut(s) 178, 187, 586, 629, 698
HspAI GCGC 2 cut(s) 618, 644
Kzo9I GATC 2 cut(s) 394, 631
LmnI GCTCC 2 cut(s) 44, 512
LpnPI CCDG 7 cut(s) 76, 93, 98, 313, 544, 561, 745
Lsp1109I GCAGC 2 cut(s) 88, 607
LweI GCATC 2 cut(s) 408, 529
MaeI CTAG 4 cut(s) 117, 189, 410, 507
MaeII ACGT 2 cut(s) 53, 235
MaeIII GTNAC 4 cut(s) 164, 299, 638, 650
MalI GATC 2 cut(s) 396, 633
MboI GATC 2 cut(s) 394, 631
MboII GAAGA 3 cut(s) 34, 359, 487
MhlI GDGCHC 1 cut(s) 569
MseI TTAA 2 cut(s) 195, 252
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 79
MvnI CGCG 2 cut(s) 573, 644
MwoI GCNNNNNNNGC 2 cut(s) 548, 564
NdeII GATC 2 cut(s) 394, 631
NlaIII CATG 5 cut(s) 178, 187, 586, 629, 698
NlaIV GGNNCC 2 cut(s) 40, 83
NmuCI GTSAC 3 cut(s) 299, 638, 650
PaqCI CACCTGC 1 cut(s) 556
PceI AGGCCT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 4 cut(s) 78, 371, 490, 622
Psp124BI GAGCTC 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 40, 83
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 569
SaqAI TTAA 2 cut(s) 195, 252
SatI GCNGC 4 cut(s) 77, 370, 489, 621
Sau3AI GATC 2 cut(s) 394, 631
SduI GDGCHC 1 cut(s) 569
SfaNI GCATC 2 cut(s) 408, 529
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 58, 499
SmoI CTYRAG 2 cut(s) 58, 499
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 4 cut(s) 79, 370, 489, 556
SspMI CTAG 4 cut(s) 117, 189, 410, 507
SstI GAGCTC 1 cut(s) 569
StuI AGGCCT 1 cut(s) 331
TaaI ACNGT 5 cut(s) 32, 172, 535, 606, 743
TaiI ACGT 2 cut(s) 56, 238
TaqI TCGA 3 cut(s) 221, 452, 660
TatI WGTACW 1 cut(s) 689
TauI GCSGC 2 cut(s) 372, 491
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 2 cut(s) 195, 252
Tru9I TTAA 2 cut(s) 195, 252
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 3 cut(s) 299, 638, 650
TseI GCWGC 2 cut(s) 76, 620
Tsp45I GTSAC 3 cut(s) 299, 638, 650
TspDTI ATGAA 1 cut(s) 720
TspRI CASTG 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 4 cut(s) 117, 189, 410, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.