Rh1AG138100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000153
Physical Location & Seq
Reverse (-)
26148759 .. 26149481
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG138100.1

Sequence Viewer

Length: 723 bp
ATGCTATCCCTGTGGCTGACAAAATTCATCTTCATTGAGTTCTCTTATGAGTATGTTGAGGAGCGCCTGTTTCCCTTGGCAATTGCAATAGCAGCCGGCAGTAGGTTTCCTTTGGGACCAATGTTTCTTGGTCATGTCTATCGTCTGCTTGACCATATTGTTGTTGACGAGTTGGAGAGCGTTGGTCGGTGTGGAGTCACTACATTGGTTTCTACCACCTTTCTGCAAGTATTTATCTGGGAACTGTTCAAAGGATTAAAGATGGAGCCCCTGACCATGAGTCTCTCTTTGGAATTGTATAATAACGACAAGGAAGGCAGCAAGCAAGCACAGACTGAGTATTTGCCGCCGGTACTCCCTCTGCTGTGTCGTTGGTTCAAAAGGAGACAAGATAAGACTGTATTTGCTCCAAGCATGTTAGACAATGTGAATAATTTCATCTGGCAGCCCTATCTCCAACCTTCTGAGTTTGAGACCTTTTCGTTTTCTGGTAGGGAAGAGCAGTGTGCTACAGCTCTCGGTCGGGTTGAGCTATACATGACTGTTTGCCCAAATTTTATCCCATCCATCAGTGAGGATAAGGAAGACTTGGATATTTTCCCTGTTGTTTATTCTCCTGACAGAGTGATGCGGCAACTTGGCTACCTTCAGGATGTTCCCTCACCTCCAGCTCGCTCCCTTAACTCTAAGATCACAAGCTTTTCCCATATGGAGAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

240

Amino Acids

27.72

Weight (kDa)

5.1

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 227 2.8e-22 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 347, 631
AcsI RAATTY 2 cut(s) 23, 553
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 250, 379
AhdI GACNNNNNGTC 1 cut(s) 279
AluBI AGCT 4 cut(s) 515, 532, 671, 699
AluI AGCT 4 cut(s) 515, 532, 671, 699
Alw26I GTCTC 3 cut(s) 287, 379, 467
ApeKI GCWGC 3 cut(s) 92, 318, 445
ApoI RAATTY 2 cut(s) 23, 553
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 654
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 104, 330, 457
BccI CCATC 3 cut(s) 256, 571, 575
BcoDI GTCTC 3 cut(s) 287, 379, 467
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 5 cut(s) 93, 319, 347, 446, 632
BlsI GCNGC 5 cut(s) 94, 320, 348, 447, 633
Bme18I GGWCC 1 cut(s) 116
BmeRI GACNNNNNGTC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 117, 267
BmsI GCATC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 2 cut(s) 95, 349
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 563, 658
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 327, 456
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 104, 330, 457
Bsh1285I CGRYCG 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 96, 350
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 3 cut(s) 287, 379, 467
BsmFI GGGAC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 690
BspACI CCGC 2 cut(s) 347, 631
BspCNI CTCAG 2 cut(s) 328, 457
BspLI GGNNCC 2 cut(s) 117, 267
BspQI GCTCTTC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 467
BsrFI RCCGGY 2 cut(s) 95, 349
BssAI RCCGGY 2 cut(s) 95, 349
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 246, 400, 544
Bst6I CTCTTC 1 cut(s) 492
BstC8I GCNNGC 4 cut(s) 97, 323, 327, 673
BstDEI CTNAG 3 cut(s) 336, 465, 687
BstF5I GGATG 2 cut(s) 563, 658
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 693
BstMAI GTCTC 3 cut(s) 287, 379, 467
BstMBI GATC 1 cut(s) 690
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 104, 330, 457
BstV2I GAAGAC 1 cut(s) 591
BtsCI GGATG 2 cut(s) 563, 658
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 2 cut(s) 509, 577
Cac8I GCNNGC 4 cut(s) 97, 323, 327, 673
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 95, 349
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 353
CviAII CATG 4 cut(s) 134, 277, 415, 538
CviJI RGCY 9 cut(s) 16, 95, 268, 448, 515, 532, 642, 671, 699
CviKI_1 RGCY 9 cut(s) 16, 95, 268, 448, 515, 532, 642, 671, 699
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 3 cut(s) 336, 465, 687
DpnI GATC 1 cut(s) 692
DpnII GATC 1 cut(s) 690
DriI GACNNNNNGTC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 492
Eam1105I GACNNNNNGTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 137, 280, 418, 541
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 129
FatI CATG 4 cut(s) 133, 276, 414, 537
FauNDI CATATG 1 cut(s) 708
Fnu4HI GCNGC 5 cut(s) 93, 319, 347, 446, 632
FokI GGATG 2 cut(s) 550, 665
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 5 cut(s) 93, 319, 347, 446, 632
GlaI GCGC 1 cut(s) 65
GluI GCNGC 5 cut(s) 93, 319, 347, 446, 632
GsuI CTGGAG 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 67
HapII CCGG 2 cut(s) 96, 350
HhaI GCGC 1 cut(s) 66
Hin1II CATG 4 cut(s) 137, 280, 418, 541
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 2 cut(s) 195, 280
HpaII CCGG 2 cut(s) 96, 350
HphI GGTGA 1 cut(s) 654
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 617, 650
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 308, 471, 656
HpyCH4III ACNGT 3 cut(s) 246, 400, 544
HpyCH4V TGCA 2 cut(s) 86, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 336, 465, 687
Hsp92II CATG 4 cut(s) 137, 280, 418, 541
HspAI GCGC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 690
LguI GCTCTTC 1 cut(s) 492
LmnI GCTCC 4 cut(s) 61, 265, 412, 680
Lsp1109I GCAGC 3 cut(s) 104, 330, 457
LweI GCATC 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 692
MboI GATC 1 cut(s) 690
MboII GAAGA 3 cut(s) 22, 509, 596
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 5 cut(s) 23, 81, 293, 433, 553
MlyI GAGTC 2 cut(s) 204, 289
MmeI TCCRAC 2 cut(s) 153, 481
MnlI CCTC 5 cut(s) 52, 369, 568, 670, 675
MroNI GCCGGC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 2 cut(s) 257, 681
MspI CCGG 2 cut(s) 96, 350
MunI CAATTG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 92
NaeI GCCGGC 1 cut(s) 97
NdeI CATATG 1 cut(s) 708
NdeII GATC 1 cut(s) 690
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 4 cut(s) 137, 280, 418, 541
NlaIV GGNNCC 2 cut(s) 117, 267
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 434
PkrI GCNGC 5 cut(s) 94, 320, 348, 447, 633
PleI GAGTC 2 cut(s) 203, 288
PpsI GAGTC 2 cut(s) 203, 288
PspN4I GGNNCC 2 cut(s) 117, 267
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 257, 681
SatI GCNGC 5 cut(s) 93, 319, 347, 446, 632
Sau3AI GATC 1 cut(s) 690
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 204, 289
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 1 cut(s) 116
Sse9I AATT 5 cut(s) 23, 81, 293, 433, 553
SsiI CCGC 2 cut(s) 347, 631
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 3 cut(s) 246, 400, 544
TaqII GACCGA 1 cut(s) 509
TasI AATT 5 cut(s) 23, 81, 293, 433, 553
TauI GCSGC 2 cut(s) 349, 634
Tru1I TTAA 2 cut(s) 257, 681
Tru9I TTAA 2 cut(s) 257, 681
TscAI CASTG 2 cut(s) 509, 577
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 92, 318, 445
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 16, 22, 427
TspRI CASTG 2 cut(s) 509, 577
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 23, 553
XceI RCATGY 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.