Rmu_sc0001094.1_g000018

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001094.1
OG0000153
Physical Location & Seq
Forward (+)
119210 .. 123234
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001094.1_g000018.1.cds

Sequence Viewer

Length: 3018 bp
atggctcctgaggtgtgtagtttagttgatcaccatttcgtgcttgaggacggtcttaagaaggagtttagaggcaattatgaaacttccagagatgtcagtcttgagcagatttcaaggctactgattgagaggggggattattcggcagttcctataaactttgagtatccctgtggtttagttacgggatggccacaatgggttgactatgaactaggagatgaggctacgagaatcagactttcagaggctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacagggatgtggagtctctccgtcatgtagttcgaaggtggaatcctcacacgcatacctttgtttgcgagtggggagagtttacccctaccttggaggatgtcttgaacattatgaggcttcccattactggttccgtcaaccctcttggctttgattttgactcagagaagttgcaggttcttgtagaaggggcttccagtattaaaggaactctaggtcgggttgaactatacatgactgtttgcccaaacttcatcccgtctatcagtgaggataaggaagacttggatatcttccctgttgtttattctcccgacagagtgatgcggcaacttggttgccttcaggacgttccctcacctccacctcgctctcttaactctaagatcacaagcttttctcatatggagcgtagatgtgtactcgacttttctggcagaattgcagacttcccatctcagttgccagggaatgccgcgaatgctaacgcctcccctgcttatagttgttattggaggggagtgttgtgcaggttcaggctctttgtggaagccgtcggtcctcagctacagttgggacctattaccagcagtaggttggctagccccaaggctgtactgacttatgccgaaaagcataacctcacgtatactgaagtgtatagcgatggcactagaaaagttgtcggctatttaaagggttttgaagctaagagggtgaagagagaggaaaagcagtgcgataagaagataggtgataaaggtgatgcgagggatcataacgctcagaagcctgctcggtgtttcaagcccaaggtggattttgacaagtttatgcatacaacccaacacggagtcaaactgatgatccccccaagcatgccgcttcaaaagaacaagggggtcaagaagaaaagatcttcaacaccccgagcaggtggtacttcctattcaaagcaagcaaatgctaccaatttcgaagtgaagaaaagggtgaagagggaggctggtgcagattttgatgttcctcttcgtcgaagcaaccgtgtgaaatccaagagttctccttcccctcgtggtcctccagcttatcttgagttatctgattctgatcacggagagggttctcaagggggtccaactgattcttctaaagaggatcatactaattcttcgaaaggggcatctgatcatctgcctgaagtgcctcccatgattagccaagatagtgacaatcaggttatcgaagatgaaggcatgagtgatggtgataaggtcgtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcgataaggtggtcacagatgaaggcatgaatgatggcaataaggtggccgaagatgaaggcatgagtgatggtgacaagcaagagcaggggcatccttcagaagttgataagagtactgacggggttggtcataacacggcggtacacgccttagttgagtctgataagcacattccagggattgataaggtgactgccattcacactcaaagccttggccccagcttgcctgccaaagggtcaactagtgagtgggcgacccatatggacaacttcatggttcgatttgcttctaaagaggagtctgctctaagcatggctgacgttacaccagtgttgagccgagacatcgctgtttttgctggtatgaaaattccttcagagttggtgggtcccttgactagatttgctgagagatatagcggtggagatatctttagtttaattgatcgagactatacttcaaggaagaagtgtgaattgattaaggaacttggcatgatgttgtacagcatggaagtttgccagataaaagatggagaagtattcctcatttggagagacacctgtcgtgatttcatgggggcagctcttaacattggcttcctgttggattccttaaaacaaggtgcaaagcatttctttggttatatgatgaggtctgaaggatcagagaaccagtatgttaaagttcaaggtctgcaggagatggtttcgcaaaccaaggaggagcttacatgtcttgagggagagttgcgcaaggctcaagatgatctgagttctagtctgcgtgacgtttctgtgcctgccatggagtgcgtactagaatcttcttggaagaatggcagttgcttctcttattatttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1005

Amino Acids

110.61

Weight (kDa)

4.7

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1226
Acc16I TGCGCA 1 cut(s) 2903
Acc36I ACCTGC 3 cut(s) 466, 822, 1226
AccI GTMKAC 1 cut(s) 950
AccII CGCG 1 cut(s) 779
AciI CCGC 5 cut(s) 628, 777, 1184, 2285, 2568
AclWI GGATC 4 cut(s) 1083, 1162, 1467, 2821
AcoI YGGCCR 2 cut(s) 194, 2190
AcsI RAATTY 1 cut(s) 2517
AcuI CTGAAG 6 cut(s) 629, 975, 1521, 2226, 2508, 2829
AfaI GTAC 7 cut(s) 723, 918, 1243, 2260, 2289, 2654, 2967
AfiI CCNNNNNNNGG 5 cut(s) 391, 428, 894, 1235, 2381
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 2882
AhlI ACTAGT 1 cut(s) 2390
AjnI CCWGG 2 cut(s) 766, 2320
AjuI GAANNNNNNNTTGG 2 cut(s) 1432, 1464
AluBI AGCT 7 cut(s) 696, 868, 1010, 1388, 2370, 2735, 2878
AluI AGCT 7 cut(s) 696, 868, 1010, 1388, 2370, 2735, 2878
Alw26I GTCTC 4 cut(s) 318, 2484, 2592, 2700
AlwI GGATC 4 cut(s) 1083, 1162, 1467, 2821
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 1230
AoxI GGCC 3 cut(s) 194, 2190, 2362
ApeKI GCWGC 2 cut(s) 254, 2732
ApoI RAATTY 1 cut(s) 2517
AspLEI GCGC 1 cut(s) 2904
AspS9I GGNCC 6 cut(s) 860, 878, 1379, 1436, 2363, 2537
AsuHPI GGTGA 9 cut(s) 23, 651, 1030, 1067, 1076, 1306, 1580, 2228, 2347
AsuII TTCGAA 3 cut(s) 331, 1278, 1475
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 1230
AvaII GGWCC 5 cut(s) 860, 878, 1379, 1436, 2537
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 196
BauI CACGAG 1 cut(s) 1374
BbsI GAAGAC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 241, 2744
BceAI ACGGC 2 cut(s) 839, 2298
BciT130I CCWGG 2 cut(s) 768, 2322
BciVI GTATCC 1 cut(s) 180
BclI TGATCA 3 cut(s) 28, 1411, 1489
BcoDI GTCTC 4 cut(s) 318, 2484, 2592, 2700
BcuI ACTAGT 1 cut(s) 2390
BfaI CTAG 8 cut(s) 218, 515, 903, 975, 2391, 2547, 2928, 2969
BfmI CTRYAG 2 cut(s) 869, 2846
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 3 cut(s) 466, 822, 1226
BfuI GTATCC 1 cut(s) 180
BglII AGATCT 1 cut(s) 1217
BisI GCNGC 5 cut(s) 255, 629, 777, 1184, 2733
BlsI GCNGC 5 cut(s) 256, 630, 778, 1185, 2734
BmcAI AGTACT 1 cut(s) 2260
Bme1390I CCNGG 2 cut(s) 768, 2322
Bme18I GGWCC 5 cut(s) 860, 878, 1379, 1436, 2537
BmeT110I CYCGRG 1 cut(s) 1230
BmgT120I GGNCC 6 cut(s) 860, 878, 1379, 1436, 2363, 2537
BmiI GGNNCC 7 cut(s) 6, 433, 879, 1437, 2365, 2538, 2539
BmrFI CCNGG 2 cut(s) 768, 2322
BmsI GCATC 4 cut(s) 615, 1057, 1493, 2245
BmtI GCTAGC 1 cut(s) 906
BoxI GACNNNNGTC 1 cut(s) 2712
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 1368
Bpu10I CCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 3 cut(s) 331, 1278, 1475
BpuEI CTTGAG 6 cut(s) 65, 125, 1413, 1415, 2895, 2909
BsaAI YACGTR 1 cut(s) 948
BsaBI GATNNNNATC 1 cut(s) 1410
BsaJI CCNNGG 8 cut(s) 390, 767, 909, 1113, 2321, 2359, 2868, 2955
Bsc4I CCNNNNNNNGG 5 cut(s) 391, 428, 894, 1235, 2381
Bse1I ACTGG 4 cut(s) 433, 498, 2477, 2824
Bse21I CCTNAGG 1 cut(s) 9
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 2 cut(s) 768, 2322
BseDI CCNNGG 8 cut(s) 390, 767, 909, 1113, 2321, 2359, 2868, 2955
BseGI GGATG 5 cut(s) 197, 310, 403, 555, 2236
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 5 cut(s) 391, 428, 894, 1235, 2381
BseMII CTCAG 6 cut(s) 477, 773, 878, 1100, 2547, 2912
BseNI ACTGG 4 cut(s) 433, 498, 2477, 2824
BseRI GAGGAG 2 cut(s) 2459, 2888
BseXI GCAGC 2 cut(s) 241, 2744
BseYI CCCAGC 1 cut(s) 2366
BsgI GTGCAG 2 cut(s) 850, 1332
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 3 cut(s) 196, 2192, 2364
BsiHKCI CYCGRG 1 cut(s) 1230
BslFI GGGAC 2 cut(s) 891, 2523
BslI CCNNNNNNNGG 5 cut(s) 391, 428, 894, 1235, 2381
BsmAI GTCTC 4 cut(s) 318, 2484, 2592, 2700
BsmFI GGGAC 2 cut(s) 891, 2523
BsmI GAATGC 2 cut(s) 778, 787
BsnI GGCC 3 cut(s) 196, 2192, 2364
BsoBI CYCGRG 1 cut(s) 1230
Bsp119I TTCGAA 3 cut(s) 331, 1278, 1475
Bsp1407I TGTACA 1 cut(s) 2652
Bsp19I CCATGG 1 cut(s) 2955
BspACI CCGC 5 cut(s) 628, 777, 1184, 2285, 2568
BspANI GGCC 3 cut(s) 196, 2192, 2364
BspCNI CTCAG 6 cut(s) 476, 772, 877, 1099, 2548, 2913
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 7 cut(s) 6, 433, 879, 1437, 2365, 2538, 2539
BspMAI CTGCAG 1 cut(s) 2850
BspMI ACCTGC 3 cut(s) 466, 822, 1226
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 4 cut(s) 1083, 1162, 1467, 2821
BspT104I TTCGAA 3 cut(s) 331, 1278, 1475
BspTI CTTAAG 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 2652
BsrI ACTGG 4 cut(s) 433, 498, 2477, 2824
BssECI CCNNGG 8 cut(s) 390, 767, 909, 1113, 2321, 2359, 2868, 2955
BssNAI GTATAC 1 cut(s) 951
BssSI CACGAG 1 cut(s) 1374
BssT1I CCWWGG 6 cut(s) 390, 909, 1113, 2359, 2868, 2955
Bst1107I GTATAC 1 cut(s) 951
Bst2BI CACGAG 1 cut(s) 1374
Bst2UI CCWGG 2 cut(s) 768, 2322
Bst4CI ACNGT 4 cut(s) 53, 541, 873, 1346
Bst6I CTCTTC 3 cut(s) 1016, 1292, 1335
BstAFI CTTAAG 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 2652
BstBAI YACGTR 1 cut(s) 948
BstBI TTCGAA 3 cut(s) 331, 1278, 1475
BstC8I GCNNGC 7 cut(s) 904, 1095, 1181, 1260, 2372, 2376, 2952
BstDSI CCRYGG 1 cut(s) 2955
BstENI CCTNNNNNAGG 1 cut(s) 2379
BstF5I GGATG 5 cut(s) 197, 310, 403, 555, 2236
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 2904
BstMAI GTCTC 4 cut(s) 318, 2484, 2592, 2700
BstMWI GCNNNNNNNGC 5 cut(s) 782, 797, 1504, 2291, 2504
BstNI CCWGG 2 cut(s) 768, 2322
BstNSI RCATGY 2 cut(s) 1183, 2886
BstPAI GACNNNNGTC 1 cut(s) 2712
BstSCI CCNGG 2 cut(s) 766, 2320
BstSFI CTRYAG 2 cut(s) 869, 2846
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 2 cut(s) 241, 2744
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 1217
BstYI RGATCY 1 cut(s) 1217
BstZ17I GTATAC 1 cut(s) 951
Bsu36I CCTNAGG 1 cut(s) 9
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 196, 2192, 2364
BtgI CCRYGG 1 cut(s) 2955
BtgZI GCGATG 2 cut(s) 981, 2479
BtsCI GGATG 5 cut(s) 197, 310, 403, 555, 2236
BtsI GCAGTG 1 cut(s) 1043
BtsIMutI CAGTG 3 cut(s) 574, 1043, 2484
BveI ACCTGC 3 cut(s) 466, 822, 1226
Cac8I GCNNGC 7 cut(s) 904, 1095, 1181, 1260, 2372, 2376, 2952
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 2904
Cfr13I GGNCC 6 cut(s) 860, 878, 1379, 1436, 2363, 2537
Csp6I GTAC 7 cut(s) 722, 917, 1242, 2259, 2288, 2653, 2966
CviQI GTAC 7 cut(s) 722, 917, 1242, 2259, 2288, 2653, 2966
DraI TTTAAA 1 cut(s) 996
EaeI YGGCCR 2 cut(s) 194, 2190
Eam1104I CTCTTC 3 cut(s) 1016, 1292, 1335
EarI CTCTTC 3 cut(s) 1016, 1292, 1335
Eco130I CCWWGG 6 cut(s) 390, 909, 1113, 2359, 2868, 2955
Eco32I GATATC 3 cut(s) 295, 592, 2578
Eco47I GGWCC 5 cut(s) 860, 878, 1379, 1436, 2537
Eco57I CTGAAG 6 cut(s) 629, 975, 1521, 2226, 2508, 2829
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 1230
EcoNI CCTNNNNNAGG 1 cut(s) 2379
EcoO109I RGGNCCY 2 cut(s) 878, 2537
EcoRII CCWGG 2 cut(s) 766, 2320
EcoRV GATATC 3 cut(s) 295, 592, 2578
EcoT14I CCWWGG 6 cut(s) 390, 909, 1113, 2359, 2868, 2955
EcoT22I ATGCAT 1 cut(s) 1140
ErhI CCWWGG 6 cut(s) 390, 909, 1113, 2359, 2868, 2955
FalI AAGNNNNNCTT 4 cut(s) 569, 601, 2771, 2803
FaqI GGGAC 2 cut(s) 891, 2523
FauNDI CATATG 2 cut(s) 705, 2409
FbaI TGATCA 3 cut(s) 28, 1411, 1489
FblI GTMKAC 1 cut(s) 950
Fnu4HI GCNGC 5 cut(s) 255, 629, 777, 1184, 2733
FokI GGATG 5 cut(s) 204, 317, 410, 542, 2223
Fsp4HI GCNGC 5 cut(s) 255, 629, 777, 1184, 2733
FspBI CTAG 8 cut(s) 218, 515, 903, 975, 2391, 2547, 2928, 2969
FspI TGCGCA 1 cut(s) 2903
GlaI GCGC 1 cut(s) 2903
GluI GCNGC 5 cut(s) 255, 629, 777, 1184, 2733
GsaI CCCAGC 1 cut(s) 2370
GsuI CTGGAG 1 cut(s) 1368
HaeIII GGCC 3 cut(s) 196, 2192, 2364
HhaI GCGC 1 cut(s) 2904
Hin6I GCGC 1 cut(s) 2902
HinP1I GCGC 1 cut(s) 2902
HincII GTYRAC 3 cut(s) 208, 439, 2388
HindII GTYRAC 3 cut(s) 208, 439, 2388
HindIII AAGCTT 1 cut(s) 694
HphI GGTGA 9 cut(s) 23, 651, 1030, 1067, 1076, 1306, 1580, 2228, 2347
Hpy166II GTNNAC 7 cut(s) 208, 381, 439, 722, 951, 2290, 2388
Hpy8I GTNNAC 7 cut(s) 208, 381, 439, 722, 951, 2290, 2388
Hpy99I CGWCG 2 cut(s) 860, 1338
HpyCH4III ACNGT 4 cut(s) 53, 541, 873, 1346
HpyCH4IV ACGT 4 cut(s) 651, 947, 2469, 2940
HpyCH4V TGCA 7 cut(s) 475, 746, 831, 1138, 1313, 2777, 2848
HpyF10VI GCNNNNNNNGC 5 cut(s) 782, 797, 1504, 2291, 2504
HpySE526I ACGT 4 cut(s) 651, 947, 2469, 2940
HspAI GCGC 1 cut(s) 2902
KflI GGGWCCC 1 cut(s) 2537
Ksp22I TGATCA 3 cut(s) 28, 1411, 1489
LmnI GCTCC 3 cut(s) 10, 709, 2875
Lsp1109I GCAGC 2 cut(s) 241, 2744
LweI GCATC 4 cut(s) 615, 1057, 1493, 2245
MaeI CTAG 8 cut(s) 218, 515, 903, 975, 2391, 2547, 2928, 2969
MaeII ACGT 4 cut(s) 651, 947, 2469, 2940
MflI RGATCY 1 cut(s) 1217
MlsI TGGCCA 1 cut(s) 196
MluCI AATT 7 cut(s) 76, 741, 1273, 1468, 2517, 2589, 2624
MluNI TGGCCA 1 cut(s) 196
MlyI GAGTC 5 cut(s) 320, 455, 1164, 2312, 2456
MmeI TCCRAC 2 cut(s) 1463, 2736
Mox20I TGGCCA 1 cut(s) 196
Mph1103I ATGCAT 1 cut(s) 1140
MscI TGGCCA 1 cut(s) 196
MseI TTAA 9 cut(s) 57, 504, 678, 995, 2588, 2631, 2739, 2765, 2832
Msp20I TGGCCA 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 768, 2322
Mva1269I GAATGC 2 cut(s) 778, 787
MvaI CCWGG 2 cut(s) 768, 2322
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 5 cut(s) 782, 797, 1504, 2291, 2504
NcoI CCATGG 1 cut(s) 2955
NdeI CATATG 2 cut(s) 705, 2409
NheI GCTAGC 1 cut(s) 902
NlaIV GGNNCC 7 cut(s) 6, 433, 879, 1437, 2365, 2538, 2539
NmeAIII GCCGAG 1 cut(s) 2513
NsbI TGCGCA 1 cut(s) 2903
NsiI ATGCAT 1 cut(s) 1140
NspI RCATGY 2 cut(s) 1183, 2886
NspV TTCGAA 3 cut(s) 331, 1278, 1475
PaeI GCATGC 1 cut(s) 1183
PaqCI CACCTGC 1 cut(s) 1226
PciI ACATGT 1 cut(s) 2882
PcsI WCGNNNNNNNCGW 1 cut(s) 1342
PctI GAATGC 2 cut(s) 778, 787
PfeI GAWTC 6 cut(s) 237, 340, 1406, 1445, 2759, 2972
PkrI GCNGC 5 cut(s) 256, 630, 778, 1185, 2734
PleI GAGTC 5 cut(s) 319, 455, 1163, 2311, 2455
PpsI GAGTC 5 cut(s) 319, 455, 1163, 2311, 2455
Ppu21I YACGTR 1 cut(s) 948
PpuMI RGGWCCY 2 cut(s) 878, 2537
PscI ACATGT 1 cut(s) 2882
PshAI GACNNNNGTC 1 cut(s) 2712
Psp5II RGGWCCY 2 cut(s) 878, 2537
Psp6I CCWGG 2 cut(s) 766, 2320
PspFI CCCAGC 1 cut(s) 2366
PspGI CCWGG 2 cut(s) 766, 2320
PspN4I GGNNCC 7 cut(s) 6, 433, 879, 1437, 2365, 2538, 2539
PspPI GGNCC 6 cut(s) 860, 878, 1379, 1436, 2363, 2537
PspPPI RGGWCCY 2 cut(s) 878, 2537
PstI CTGCAG 1 cut(s) 2850
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 1217
RsaI GTAC 7 cut(s) 723, 918, 1243, 2260, 2289, 2654, 2967
RsaNI GTAC 7 cut(s) 722, 917, 1242, 2259, 2288, 2653, 2966
SaqAI TTAA 9 cut(s) 57, 504, 678, 995, 2588, 2631, 2739, 2765, 2832
SatI GCNGC 5 cut(s) 255, 629, 777, 1184, 2733
Sau96I GGNCC 6 cut(s) 860, 878, 1379, 1436, 2363, 2537
ScaI AGTACT 1 cut(s) 2260
SchI GAGTC 5 cut(s) 320, 455, 1164, 2312, 2456
ScrFI CCNGG 2 cut(s) 768, 2322
SfaNI GCATC 4 cut(s) 615, 1057, 1493, 2245
SfcI CTRYAG 2 cut(s) 869, 2846
SfuI TTCGAA 3 cut(s) 331, 1278, 1475
SinI GGWCC 5 cut(s) 860, 878, 1379, 1436, 2537
SmlI CTYRAG 7 cut(s) 44, 56, 104, 1394, 1428, 2888, 2910
SmoI CTYRAG 7 cut(s) 44, 56, 104, 1394, 1428, 2888, 2910
SpeI ACTAGT 1 cut(s) 2390
SphI GCATGC 1 cut(s) 1183
Sse9I AATT 7 cut(s) 76, 741, 1273, 1468, 2517, 2589, 2624
SsiI CCGC 5 cut(s) 628, 777, 1184, 2285, 2568
SspMI CTAG 8 cut(s) 218, 515, 903, 975, 2391, 2547, 2928, 2969
StyD4I CCNGG 2 cut(s) 766, 2320
StyI CCWWGG 6 cut(s) 390, 909, 1113, 2359, 2868, 2955
TaaI ACNGT 4 cut(s) 53, 541, 873, 1346
TaiI ACGT 4 cut(s) 654, 950, 2472, 2943
TaqI TCGA 8 cut(s) 331, 726, 1278, 1336, 1475, 1545, 2428, 2596
TaqII GACCGA 1 cut(s) 848
TasI AATT 7 cut(s) 76, 741, 1273, 1468, 2517, 2589, 2624
TatI WGTACW 4 cut(s) 721, 916, 2258, 2652
TauI GCSGC 3 cut(s) 631, 779, 1186
TfiI GAWTC 6 cut(s) 237, 340, 1406, 1445, 2759, 2972
Tru1I TTAA 9 cut(s) 57, 504, 678, 995, 2588, 2631, 2739, 2765, 2832
Tru9I TTAA 9 cut(s) 57, 504, 678, 995, 2588, 2631, 2739, 2765, 2832
TscAI CASTG 3 cut(s) 574, 1043, 2484
TseI GCWGC 2 cut(s) 254, 2732
TspGWI ACGGA 5 cut(s) 259, 308, 424, 1167, 1431
TspRI CASTG 3 cut(s) 574, 1043, 2484
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 5 cut(s) 860, 878, 1379, 1436, 2537
XagI CCTNNNNNAGG 1 cut(s) 2379
XapI RAATTY 1 cut(s) 2517
XceI RCATGY 2 cut(s) 1183, 2886
XcmI CCANNNNNNNNNTGG 2 cut(s) 895, 2678
XmiI GTMKAC 1 cut(s) 950
XspI CTAG 8 cut(s) 218, 515, 903, 975, 2391, 2547, 2928, 2969
ZrmI AGTACT 1 cut(s) 2260
Zsp2I ATGCAT 1 cut(s) 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.