Rmu_ssc0000409.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000409.1
OG0000153
Physical Location & Seq
Forward (+)
58690 .. 61903
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000409.1_g000015.1.cds

Sequence Viewer

Length: 576 bp
atgttcagagtgaatgatatgggtgggcatcccggtgctgttgggtctgaagaaagctcctccggtgggttctggttgggagggtgggttgggaaaggcaaagagcctgagaatttaggttctggtatctcactaacatgtccactcatggacgtctttcctgaaaatcacaacaagaacatagggaatgagcttcacaagctcagtcgtcacaatattgtgcgcccattgagcggtacccgatcttcatttgagggtggaaaagtcccttcagagttcgtggcttcactcactaaattcgttgaaaggtacggtggaggtagcttatctagcttgtttgcaaatggaaagagtgcccatcagaaacaaaaattagttgaggagtttggttctgtgttggatgcatgtcgtgacatcatagattgggggcttaaagtcgactttatgcttgatcatttgaagcgagctggtagagatttctttggttatatgctcaggcccagtggatcagaaagtagttgcagggagatcattcaaatggaggaagttgtatccaagttgaggaaagagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.98

Weight (kDa)

7.02

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 2 cut(s) 112, 296
AcuI CTGAAG 2 cut(s) 69, 255
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 238, 311
AfiI CCNNNNNNNGG 3 cut(s) 66, 233, 561
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 3 cut(s) 305, 460, 536
AluBI AGCT 7 cut(s) 57, 193, 202, 324, 333, 467, 571
AluI AGCT 7 cut(s) 57, 193, 202, 324, 333, 467, 571
AlwI GGATC 1 cut(s) 514
AoxI GGCC 1 cut(s) 497
ApoI RAATTY 2 cut(s) 112, 296
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BccI CCATC 1 cut(s) 366
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 37, 391
BmuI ACTGGG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 233, 561
Bse1I ACTGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 28, 406
BseLI CCNNNNNNNGG 3 cut(s) 66, 233, 561
BseMII CTCAG 3 cut(s) 99, 217, 508
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 49, 395
BseSI GKGCMC 1 cut(s) 358
BshFI GGCC 1 cut(s) 499
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 33, 63
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 66, 233, 561
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 4 cut(s) 242, 451, 506, 528
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 3 cut(s) 100, 216, 507
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 501
BssMI GATC 4 cut(s) 242, 451, 506, 528
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 3 cut(s) 108, 203, 494
BstF5I GGATG 2 cut(s) 28, 406
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 245, 454, 509, 531
BstMBI GATC 4 cut(s) 242, 451, 506, 528
BstMWI GCNNNNNNNGC 3 cut(s) 199, 231, 330
BstNSI RCATGY 2 cut(s) 141, 408
BstSCI CCNGG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 358
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 2 cut(s) 28, 406
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 465
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 237, 310
CviAII CATG 3 cut(s) 138, 148, 405
CviQI GTAC 2 cut(s) 237, 310
DdeI CTNAG 3 cut(s) 108, 203, 494
DpnI GATC 4 cut(s) 244, 453, 508, 530
DpnII GATC 4 cut(s) 242, 451, 506, 528
Eco57I CTGAAG 2 cut(s) 69, 255
EcoT22I ATGCAT 1 cut(s) 406
FaeI CATG 3 cut(s) 141, 151, 408
FaiI YATR 9 cut(s) 20, 139, 149, 182, 406, 419, 446, 489, 491
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 137, 147, 404
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 438
FokI GGATG 2 cut(s) 15, 413
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 499
HapII CCGG 2 cut(s) 33, 63
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 141, 151, 408
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HpaII CCGG 2 cut(s) 33, 63
Hpy166II GTNNAC 2 cut(s) 143, 439
Hpy188I TCNGA 5 cut(s) 8, 49, 274, 363, 511
Hpy188III TCNNGA 2 cut(s) 161, 410
Hpy8I GTNNAC 2 cut(s) 143, 439
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 341, 404, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 231, 330
HpyF3I CTNAG 3 cut(s) 108, 203, 494
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 141, 151, 408
HspAI GCGC 1 cut(s) 223
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 242, 451, 506, 528
LmnI GCTCC 1 cut(s) 62
LweI GCATC 2 cut(s) 37, 391
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 209, 410
MalI GATC 4 cut(s) 244, 453, 508, 530
MbiI CCGCTC 1 cut(s) 234
MboI GATC 4 cut(s) 242, 451, 506, 528
MboII GAAGA 2 cut(s) 62, 237
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 3 cut(s) 112, 296, 371
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 70, 74, 247, 311, 373, 535, 555
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 3 cut(s) 33, 136, 536
MspI CCGG 2 cut(s) 33, 63
MspR9I CCNGG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 199, 231, 330
NciI CCSGG 1 cut(s) 33
NdeII GATC 4 cut(s) 242, 451, 506, 528
NlaIII CATG 3 cut(s) 141, 151, 408
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 209, 410
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 2 cut(s) 141, 408
PciI ACATGT 1 cut(s) 137
PscI ACATGT 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 498
RsaI GTAC 2 cut(s) 238, 311
RsaNI GTAC 2 cut(s) 237, 310
RseI CAYNNNNRTG 3 cut(s) 33, 136, 536
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 432
Sau3AI GATC 4 cut(s) 242, 451, 506, 528
Sau96I GGNCC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 2 cut(s) 37, 391
SmiMI CAYNNNNRTG 3 cut(s) 33, 136, 536
Sse9I AATT 3 cut(s) 112, 296, 371
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 438
TasI AATT 3 cut(s) 112, 296, 371
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 2 cut(s) 209, 410
Tsp45I GTSAC 2 cut(s) 209, 410
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 508
XapI RAATTY 2 cut(s) 112, 296
XceI RCATGY 2 cut(s) 141, 408
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 330
ZraI GACGTC 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.