Rroxscaffold_7G00194910

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000153
Physical Location & Seq
Reverse (-)
37009969 .. 37011303
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194910.1

Sequence Viewer

Length: 609 bp
ATGGGGTGTTTGTCCCGTGTAAAGGCTTTCATTCCGGTTGCCGCCCGGAAGCAATGCTATCTCTCGTGGCCGACGAAATTTGTCTTCATTGAGTTCTCTTATGAGTGTATTGAAGAGCGCGTGTTTCCCTTGGCAATTGCAATAGCAGCCGGCAGTAGGTTTCCTTTGGGACCAATGTTTCTTGGTTACATCTATCGTCCGCTCGACTACATCGTTGTTGACGAGTTGGAAAGCGTTGGTCGGTGTGGAGTTACTACATTGCATAATCTCACCTATACCGAAGTGTACAGCGATGGTACTAGAAAGATTGTCGGCTATTTAAAGGGTTTTGAAGCTAAGAGGGTGAAGGGAGAGGGAAAGAAGTGCGATAAGAAGACGGGTGATAAGGGTGATGCAAAGGAACACAACATTCGGAAGCCTATTCGGCGTTTCAAGCCCAATGTGAACTTTGATAATTTTATGCATACGACCCAACACGGAGTCAAATTGATGATTCCCCCAAGCATGCCGCTTCAAAAGAACAAGGAGGTAAAGAAGAAAAGATCCTCAACCTCCCGAGCAAGTGGTACTTCTTATGAAAAGCAAGCGAATGCTACAAGTTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

202

Amino Acids

22.86

Weight (kDa)

9.76

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 7 - 72 6.4e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 42, 200, 509
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 3 cut(s) 287, 298, 568
AfiI CCNNNNNNNGG 2 cut(s) 22, 156
AgsI TTSAA 4 cut(s) 113, 332, 433, 515
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
AlwI GGATC 1 cut(s) 537
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 77
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 4 cut(s) 262, 355, 392, 401
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 2 cut(s) 76, 380
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 424
BisI GCNGC 3 cut(s) 42, 147, 509
BlsI GCNGC 3 cut(s) 43, 148, 510
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 76, 380
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 156
Bse118I RCCGGY 1 cut(s) 149
Bse3DI GCAATG 2 cut(s) 59, 257
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 22, 156
BseMI GCAATG 2 cut(s) 59, 257
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 3 cut(s) 35, 46, 150
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 22, 156
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 602
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 542
BspACI CCGC 3 cut(s) 42, 200, 509
BspANI GGCC 1 cut(s) 70
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 2 cut(s) 59, 257
BsrFI RCCGGY 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 542
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 151, 506, 585
BstDEI CTNAG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 545
BstMBI GATC 1 cut(s) 542
BstMWI GCNNNNNNNGC 3 cut(s) 146, 424, 433
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 44
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 2 cut(s) 76, 380
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BsuRI GGCC 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 151, 506, 585
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 3 cut(s) 286, 297, 567
CviAII CATG 1 cut(s) 505
CviJI RGCY 7 cut(s) 26, 70, 149, 315, 335, 418, 436
CviKI_1 RGCY 7 cut(s) 26, 70, 149, 315, 335, 418, 436
CviQI GTAC 3 cut(s) 286, 297, 567
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 544
DpnII GATC 1 cut(s) 542
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 508
FaiI YATR 7 cut(s) 102, 264, 276, 461, 465, 506, 576
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 504
Fnu4HI GCNGC 3 cut(s) 42, 147, 509
Fsp4HI GCNGC 3 cut(s) 42, 147, 509
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 42, 147, 509
HaeIII GGCC 1 cut(s) 70
HapII CCGG 3 cut(s) 35, 46, 150
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 508
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 480, 493
HpaII CCGG 3 cut(s) 35, 46, 150
HphI GGTGA 4 cut(s) 262, 355, 392, 401
Hpy166II GTNNAC 3 cut(s) 220, 286, 445
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 1 cut(s) 555
Hpy8I GTNNAC 3 cut(s) 220, 286, 445
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 140, 262, 395, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 424, 433
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 1 cut(s) 508
HspAI GCGC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 542
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 48, 59, 163
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 185, 250
MalI GATC 1 cut(s) 544
MbiI CCGCTC 1 cut(s) 202
MboI GATC 1 cut(s) 542
MboII GAAGA 4 cut(s) 76, 125, 385, 547
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 542
MluCI AATT 4 cut(s) 77, 135, 454, 485
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 333, 346, 520, 556, 562
Mph1103I ATGCAT 1 cut(s) 465
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 1 cut(s) 320
MspI CCGG 3 cut(s) 35, 46, 150
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 146, 424, 433
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 542
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 508
NspV TTCGAA 1 cut(s) 602
PaeI GCATGC 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 210, 219
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 3 cut(s) 43, 148, 510
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 542
RsaI GTAC 3 cut(s) 287, 298, 568
RsaNI GTAC 3 cut(s) 286, 297, 567
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 3 cut(s) 42, 147, 509
Sau3AI GATC 1 cut(s) 542
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 1 cut(s) 46
SetI ASST 5 cut(s) 161, 275, 337, 531, 554
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 170
SphI GCATGC 1 cut(s) 508
Sse9I AATT 4 cut(s) 77, 135, 454, 485
SsiI CCGC 3 cut(s) 42, 200, 509
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 2 cut(s) 204, 602
TasI AATT 4 cut(s) 77, 135, 454, 485
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 44, 511
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 19, 76, 591
TspGWI ACGGA 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 508
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.