Rmu_sc0002011.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002011.1
OG0000153
Physical Location & Seq
Reverse (-)
42739 .. 43278
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002011.1_g000013.1.cds

Sequence Viewer

Length: 540 bp
atgagtggtatcagatcttcatttgagggtgggaaagtcccctcggagttcgtggccccacttactaaatttgctggaaggtatggtggaggtaggttctctagcttgtttgcagatggaaagagtgcccgtcagaaacaaaaattggttgaggagtttggttttgtgttgtatagcatggaaattgaggaagtgaaaaatgaggagatttttttaatttggagggacgcatgtcgtgacatcatagattgggggcttaaagttgacttcatgcttgataatttgaagcaagttgctagggatttctttggttatatgctcagacccagtggatcagagagtagttgcagggagatcattcaaatggaggaagctgtatccaagttgagggaaaagctttcgcatcttgaacaaaaattaggaaaggcgcgagaagacttatgcaccaagcttggtgttgacattagcttagatagcaagtcctgcatattaaaatcttcttgggttgctcagagccgtgcaactcatggcttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.26

Weight (kDa)

7.63

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 430
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 3 cut(s) 286, 362, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 105, 374, 397, 451, 468
AluI AGCT 5 cut(s) 105, 374, 397, 451, 468
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 130
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 441
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 501
BciVI GTATCC 1 cut(s) 388
BfaI CTAG 2 cut(s) 102, 297
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 321
BoxI GACNNNNGTC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 334, 524
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 2 cut(s) 167, 218
BseSI GKGCMC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 430
BshFI GGCC 1 cut(s) 56
BslFI GGGAC 2 cut(s) 23, 239
BslI CCNNNNNNNGG 1 cut(s) 387
BsmFI GGGAC 2 cut(s) 23, 239
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 14, 332, 354
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 333, 523
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 14, 332, 354
BstAPI GCANNNNNTGC 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 320, 469, 510
BstFNI CGCG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 3 cut(s) 17, 335, 357
BstMBI GATC 3 cut(s) 14, 332, 354
BstMWI GCNNNNNNNGC 2 cut(s) 474, 483
BstNSI RCATGY 1 cut(s) 234
BstPAI GACNNNNGTC 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 334
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 236
CviAII CATG 4 cut(s) 178, 231, 271, 527
CviJI RGCY 9 cut(s) 56, 105, 256, 374, 397, 451, 468, 516, 531
CviKI_1 RGCY 9 cut(s) 56, 105, 256, 374, 397, 451, 468, 516, 531
DdeI CTNAG 3 cut(s) 320, 469, 510
DpnI GATC 3 cut(s) 16, 334, 356
DpnII GATC 3 cut(s) 14, 332, 354
FaeI CATG 4 cut(s) 181, 234, 274, 530
FaqI GGGAC 2 cut(s) 23, 239
FatI CATG 4 cut(s) 177, 230, 270, 526
FspBI CTAG 2 cut(s) 102, 297
GlaI GCGC 1 cut(s) 429
HaeIII GGCC 1 cut(s) 56
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 430
Hin1II CATG 4 cut(s) 181, 234, 274, 530
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HincII GTYRAC 2 cut(s) 265, 460
HindII GTYRAC 2 cut(s) 265, 460
HindIII AAGCTT 2 cut(s) 395, 449
Hpy166II GTNNAC 2 cut(s) 265, 460
Hpy188I TCNGA 6 cut(s) 14, 46, 135, 323, 337, 513
Hpy188III TCNNGA 2 cut(s) 236, 407
Hpy8I GTNNAC 2 cut(s) 265, 460
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 113, 348, 444, 486, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 483
HpyF3I CTNAG 3 cut(s) 320, 469, 510
Hsp92II CATG 4 cut(s) 181, 234, 274, 530
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 3 cut(s) 14, 332, 354
LpnPI CCDG 4 cut(s) 60, 334, 340, 496
LweI GCATC 1 cut(s) 412
MaeI CTAG 2 cut(s) 102, 297
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 16, 334, 356
MboI GATC 3 cut(s) 14, 332, 354
MboII GAAGA 3 cut(s) 9, 446, 489
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 6 cut(s) 68, 143, 183, 216, 280, 416
MnlI CCTC 9 cut(s) 19, 52, 83, 145, 181, 196, 216, 361, 381
MseI TTAA 3 cut(s) 215, 258, 491
MslI CAYNNNNRTG 1 cut(s) 362
MvnI CGCG 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 474, 483
NdeII GATC 3 cut(s) 14, 332, 354
NlaIII CATG 4 cut(s) 181, 234, 274, 530
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 234
PshAI GACNNNNGTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 215, 258, 491
Sau3AI GATC 3 cut(s) 14, 332, 354
Sau96I GGNCC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 130
SetI ASST 8 cut(s) 83, 94, 98, 107, 376, 399, 453, 470
SfaNI GCATC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 6 cut(s) 68, 143, 183, 216, 280, 416
SspMI CTAG 2 cut(s) 102, 297
TasI AATT 6 cut(s) 68, 143, 183, 216, 280, 416
Tru1I TTAA 3 cut(s) 215, 258, 491
Tru9I TTAA 3 cut(s) 215, 258, 491
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 9, 259
TspRI CASTG 1 cut(s) 334
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 234
XspI CTAG 2 cut(s) 102, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.