Rh2AG557100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000153
Physical Location & Seq
Forward (+)
78785614 .. 78786075
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG557100.1

Sequence Viewer

Length: 462 bp
ATGGAGAAGGGTGGCAAGAGCGTAACAAAGGGTAAAGTCAGGGCTTCCGAGGGTAGAGGAGAAAGTAAAAGGAAAGTTTGCCGCTTCAAACCTAAGGTGGCAAAGGATCGCATCCCTCCTCCAGTAATCAAGAGTGCCTTTGGTGTCAAAGTGATACTGCCATCGAGTTTGGCTAGTGAAAAAGGGAAGAAGAGGAAAGCTGCTTCTACCTTGAGACAGCGTGGGGTTACTAAGAGAAAAGTTACAGATGATGCCTCACCTGCTGTCCTCAGGCGGAGCTCTCGCGTTGCTAACATGAGTTTTTCTAAACCTAAACCGTCGTCTAAGGGCGCTGCTCATGTTGATCTTAGTGACGCGCCAAGTGACGACATCAAAGGTAGCCCCCTTAGTGATAATGTCAGTACACATGAGGAGAATGAATTTGATACTTATGAGGGAGATACATGCGATGACAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.46

Weight (kDa)

9.93

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 268
AccII CGCG 2 cut(s) 285, 356
AciI CCGC 2 cut(s) 82, 274
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 403
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 200, 279
AluI AGCT 2 cut(s) 200, 279
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 200, 332
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 2 cut(s) 332, 358
AsuHPI GGTGA 1 cut(s) 249
AxyI CCTNAGG 2 cut(s) 93, 269
BanII GRGCYC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 187, 319
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 3 cut(s) 82, 201, 333
BlsI GCNGC 3 cut(s) 83, 202, 334
BmsI GCATC 2 cut(s) 120, 241
BpmI CTGGAG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 2 cut(s) 93, 269
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 3 cut(s) 72, 108, 425
BseXI GCAGC 2 cut(s) 187, 319
Bsh1236I CGCG 2 cut(s) 285, 356
BsiHKAI GWGCWC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 106, 343
BspACI CCGC 2 cut(s) 82, 274
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 2 cut(s) 285, 356
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 106, 343
Bst4CI ACNGT 2 cut(s) 318, 455
Bst6I CTCTTC 1 cut(s) 185
BstDEI CTNAG 6 cut(s) 93, 231, 269, 324, 347, 386
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 285, 356
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 332, 358
BstKTI GATC 2 cut(s) 109, 346
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 106, 343
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 447
BstUI CGCG 2 cut(s) 285, 356
BstV1I GCAGC 2 cut(s) 187, 319
Bsu36I CCTNAGG 2 cut(s) 93, 269
BtsCI GGATG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 332, 358
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 402
CviAII CATG 4 cut(s) 295, 338, 407, 444
CviJI RGCY 5 cut(s) 44, 173, 200, 279, 381
CviKI_1 RGCY 5 cut(s) 44, 173, 200, 279, 381
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 6 cut(s) 93, 231, 269, 324, 347, 386
DpnI GATC 2 cut(s) 108, 345
DpnII GATC 2 cut(s) 106, 343
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 93, 269
EcoICRI GAGCTC 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 4 cut(s) 298, 341, 410, 447
FaiI YATR 5 cut(s) 296, 339, 408, 432, 445
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 4 cut(s) 294, 337, 406, 443
Fnu4HI GCNGC 3 cut(s) 82, 201, 333
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 3 cut(s) 82, 201, 333
FspBI CTAG 1 cut(s) 174
GlaI GCGC 2 cut(s) 331, 357
GluI GCNGC 3 cut(s) 82, 201, 333
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 333
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 332, 358
Hin1II CATG 4 cut(s) 298, 341, 410, 447
Hin6I GCGC 2 cut(s) 330, 356
HinP1I GCGC 2 cut(s) 330, 356
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 318, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 6 cut(s) 93, 231, 269, 324, 347, 386
Hsp92II CATG 4 cut(s) 298, 341, 410, 447
HspAI GCGC 2 cut(s) 330, 356
Kzo9I GATC 2 cut(s) 106, 343
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 4 cut(s) 25, 135, 256, 273
Lsp1109I GCAGC 2 cut(s) 187, 319
LweI GCATC 2 cut(s) 120, 241
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 5 cut(s) 22, 226, 241, 350, 362
MalI GATC 2 cut(s) 108, 345
MboI GATC 2 cut(s) 106, 343
MboII GAAGA 2 cut(s) 199, 202
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 1 cut(s) 419
MnlI CCTC 9 cut(s) 43, 50, 126, 129, 186, 265, 278, 403, 427
MvnI CGCG 2 cut(s) 285, 356
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 2 cut(s) 106, 343
NlaIII CATG 4 cut(s) 298, 341, 410, 447
NmuCI GTSAC 2 cut(s) 350, 362
NspI RCATGY 1 cut(s) 447
PaqCI CACCTGC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 83, 202, 334
Psp124BI GAGCTC 1 cut(s) 281
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SacI GAGCTC 1 cut(s) 281
SatI GCNGC 3 cut(s) 82, 201, 333
Sau3AI GATC 2 cut(s) 106, 343
SduI GDGCHC 1 cut(s) 281
SetI ASST 8 cut(s) 94, 99, 202, 212, 262, 281, 313, 379
SfaNI GCATC 2 cut(s) 120, 241
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 419
SsiI CCGC 2 cut(s) 82, 274
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 281
TaaI ACNGT 2 cut(s) 318, 455
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 84
TseFI GTSAC 2 cut(s) 350, 362
TseI GCWGC 2 cut(s) 200, 332
Tsp45I GTSAC 2 cut(s) 350, 362
TspDTI ATGAA 1 cut(s) 432
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 447
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.