Rh7DG311600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000153
Physical Location & Seq
Reverse (-)
36554826 .. 36555592
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG311600.1

Sequence Viewer

Length: 480 bp
ATGAAGGAATCTGCTGTAAATGTCGGTCTTGGTGTAGATAATCGTAACAAGCAGGACAACGGTATAAATGATTTGGTGAAAGAATCTGCTGTCGACGATAGTCTTTGCAAGGATGACCATAATGAGCGGATACGTAGTGGTGGATCATTTTTGTTGACAGTTGGAGGGACATCATTTGAGCCCCATCTCCCTGAGACAGTACTGGGGGACGAAGGTGTTACTGCTGCAATCTTGGTGAGTATAGGGGTTTCGCTGTGCGTTGCCTCCGCTTGTTCTCTTGCTCGTAGCTCAAATAAATCAGAAAGGGTGTCAAAAGCTGATTTAGAGATGCGGTTTAGGAAGTTTATTGCTTATTTTGACAATGAGGATCTCTTGAGTATCACTATTGATGATATTGCATGCCCATTGAGCGGTATCCGATCTTCATTTGAGGGTGGGAAAGTTCCTTCAGTTCGTGGTTCCACTCACAAAGTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.98

Weight (kDa)

5.19

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 127, 411
AccI GTMKAC 1 cut(s) 93
AciI CCGC 4 cut(s) 127, 267, 331, 411
AclWI GGATC 2 cut(s) 151, 375
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 410
AluBI AGCT 2 cut(s) 288, 317
AluI AGCT 2 cut(s) 288, 317
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 2 cut(s) 151, 375
ApeKI GCWGC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 88, 247
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 406, 438
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 192
BciVI GTATCC 2 cut(s) 123, 425
BcoDI GTCTC 1 cut(s) 188
BfuI GTATCC 2 cut(s) 123, 425
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 212
BoxI GACNNNNGTC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 211
BslFI GGGAC 2 cut(s) 181, 221
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 181, 221
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 143, 367, 419
BspACI CCGC 4 cut(s) 127, 267, 331, 411
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 2 cut(s) 151, 375
BsrBI CCGCTC 2 cut(s) 127, 411
BsrI ACTGG 1 cut(s) 207
BssMI GATC 3 cut(s) 143, 367, 419
Bst4CI ACNGT 3 cut(s) 62, 160, 199
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 3 cut(s) 146, 370, 422
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 143, 367, 419
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 402
BstPAI GACNNNNGTC 1 cut(s) 99
BstSNI TACGTA 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuI GTATCC 2 cut(s) 123, 425
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 399
CviJI RGCY 3 cut(s) 181, 288, 317
CviKI_1 RGCY 3 cut(s) 181, 288, 317
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 145, 369, 421
DpnII GATC 3 cut(s) 143, 367, 419
Eco105I TACGTA 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 1 cut(s) 402
FaiI YATR 4 cut(s) 65, 120, 242, 400
FaqI GGGAC 2 cut(s) 181, 221
FatI CATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
Hin1II CATG 1 cut(s) 402
HincII GTYRAC 2 cut(s) 94, 156
HindII GTYRAC 2 cut(s) 94, 156
HinfI GANTC 2 cut(s) 8, 83
HphI GGTGA 2 cut(s) 88, 247
Hpy166II GTNNAC 2 cut(s) 94, 156
Hpy188I TCNGA 2 cut(s) 301, 419
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 94, 156
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 206, 456
HpyCH4III ACNGT 3 cut(s) 62, 160, 199
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 108, 227, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 1 cut(s) 402
Kzo9I GATC 3 cut(s) 143, 367, 419
LpnPI CCDG 3 cut(s) 38, 188, 204
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 318
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 44, 217
MalI GATC 3 cut(s) 145, 369, 421
MbiI CCGCTC 2 cut(s) 127, 411
MboI GATC 3 cut(s) 143, 367, 419
MboII GAAGA 1 cut(s) 414
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 4 cut(s) 158, 274, 358, 424
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeII GATC 3 cut(s) 143, 367, 419
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 460
NspI RCATGY 1 cut(s) 402
PaeI GCATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 8, 83
PkrI GCNGC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 460
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SalI GTCGAC 1 cut(s) 92
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 143, 367, 419
ScaI AGTACT 1 cut(s) 201
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 136, 217, 290, 319
SfaNI GCATC 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SnaBI TACGTA 1 cut(s) 134
SphI GCATGC 1 cut(s) 402
SsiI CCGC 4 cut(s) 127, 267, 331, 411
TaaI ACNGT 3 cut(s) 62, 160, 199
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 93
TaqII GACCGA 1 cut(s) 14
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 2 cut(s) 8, 83
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 17, 414
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.