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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 40, 258, 327 |
| AciI | CCGC | 4 cut(s) | 121, 202, 622, 743 |
| AclI | AACGTT | 1 cut(s) | 920 |
| AclWI | GGATC | 2 cut(s) | 462, 898 |
| AcuI | CTGAAG | 1 cut(s) | 601 |
| AfaI | GTAC | 4 cut(s) | 157, 684, 984, 1095 |
| AfeI | AGCGCT | 1 cut(s) | 574 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 865 |
| AflIII | ACRYGT | 1 cut(s) | 277 |
| AgsI | TTSAA | 2 cut(s) | 904, 1091 |
| AjnI | CCWGG | 1 cut(s) | 949 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 267, 299, 705, 737 |
| AleI | CACNNNNGTG | 1 cut(s) | 1058 |
| AluBI | AGCT | 7 cut(s) | 115, 338, 521, 548, 558, 721, 1043 |
| AluI | AGCT | 7 cut(s) | 115, 338, 521, 548, 558, 721, 1043 |
| Alw26I | GTCTC | 3 cut(s) | 59, 556, 804 |
| AlwI | GGATC | 2 cut(s) | 462, 898 |
| Ama87I | CYCGRG | 1 cut(s) | 559 |
| Aor51HI | AGCGCT | 1 cut(s) | 574 |
| ApeKI | GCWGC | 7 cut(s) | 115, 118, 196, 204, 548, 718, 770 |
| AspLEI | GCGC | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 3 cut(s) | 368, 757, 1045 |
| AvaI | CYCGRG | 1 cut(s) | 559 |
| AxyI | CCTNAGG | 1 cut(s) | 441 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 494, 527 |
| BauI | CACGAG | 1 cut(s) | 630 |
| BbsI | GAAGAC | 1 cut(s) | 607 |
| BbvI | GCAGC | 7 cut(s) | 102, 130, 183, 216, 535, 730, 757 |
| BccI | CCATC | 5 cut(s) | 14, 211, 518, 720, 881 |
| BceAI | ACGGC | 1 cut(s) | 711 |
| BciT130I | CCWGG | 1 cut(s) | 951 |
| BclI | TGATCA | 1 cut(s) | 793 |
| BcoDI | GTCTC | 3 cut(s) | 59, 556, 804 |
| BfaI | CTAG | 4 cut(s) | 159, 231, 555, 830 |
| BfmI | CTRYAG | 3 cut(s) | 116, 716, 846 |
| BfoI | RGCGCY | 1 cut(s) | 576 |
| BisI | GCNGC | 7 cut(s) | 116, 119, 197, 205, 549, 719, 771 |
| BlsI | GCNGC | 7 cut(s) | 117, 120, 198, 206, 550, 720, 772 |
| BmcAI | AGTACT | 1 cut(s) | 1095 |
| Bme1390I | CCNGG | 1 cut(s) | 951 |
| BmeT110I | CYCGRG | 1 cut(s) | 559 |
| BmrFI | CCNGG | 1 cut(s) | 951 |
| BmsI | GCATC | 2 cut(s) | 175, 589 |
| BpiI | GAAGAC | 1 cut(s) | 607 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BsaI | GGTCTC | 1 cut(s) | 556 |
| BsaJI | CCNNGG | 4 cut(s) | 321, 950, 978, 1056 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 616, 646 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 865 |
| Bse1I | ACTGG | 3 cut(s) | 154, 470, 820 |
| Bse21I | CCTNAGG | 1 cut(s) | 441 |
| BseBI | CCWGG | 1 cut(s) | 951 |
| BseDI | CCNNGG | 4 cut(s) | 321, 950, 978, 1056 |
| BseGI | GGATG | 4 cut(s) | 166, 319, 459, 1002 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 865 |
| BseMII | CTCAG | 3 cut(s) | 70, 243, 930 |
| BseNI | ACTGG | 3 cut(s) | 154, 470, 820 |
| BseXI | GCAGC | 7 cut(s) | 102, 130, 183, 216, 535, 730, 757 |
| BsiHKCI | CYCGRG | 1 cut(s) | 559 |
| BslFI | GGGAC | 2 cut(s) | 913, 968 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 865 |
| BsmAI | GTCTC | 3 cut(s) | 59, 556, 804 |
| BsmFI | GGGAC | 2 cut(s) | 913, 968 |
| Bso31I | GGTCTC | 1 cut(s) | 556 |
| BsoBI | CYCGRG | 1 cut(s) | 559 |
| Bsp143I | GATC | 3 cut(s) | 454, 793, 890 |
| Bsp19I | CCATGG | 1 cut(s) | 1056 |
| BspACI | CCGC | 4 cut(s) | 121, 202, 622, 743 |
| BspCNI | CTCAG | 3 cut(s) | 69, 244, 931 |
| BspHI | TCATGA | 1 cut(s) | 790 |
| BspMAI | CTGCAG | 2 cut(s) | 120, 720 |
| BspPI | GGATC | 2 cut(s) | 462, 898 |
| BspTNI | GGTCTC | 1 cut(s) | 556 |
| BsrI | ACTGG | 3 cut(s) | 154, 470, 820 |
| BssECI | CCNNGG | 4 cut(s) | 321, 950, 978, 1056 |
| BssMI | GATC | 3 cut(s) | 454, 793, 890 |
| BssNAI | GTATAC | 2 cut(s) | 41, 259 |
| BssSI | CACGAG | 1 cut(s) | 630 |
| BssT1I | CCWWGG | 2 cut(s) | 978, 1056 |
| Bst1107I | GTATAC | 2 cut(s) | 41, 259 |
| Bst2BI | CACGAG | 1 cut(s) | 630 |
| Bst2UI | CCWGG | 1 cut(s) | 951 |
| Bst4CI | ACNGT | 5 cut(s) | 214, 507, 610, 666, 875 |
| Bst6I | CTCTTC | 2 cut(s) | 471, 725 |
| BstDEI | CTNAG | 6 cut(s) | 56, 252, 441, 517, 579, 939 |
| BstDSI | CCRYGG | 1 cut(s) | 1056 |
| BstEII | GGTNACC | 1 cut(s) | 706 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 863 |
| BstF5I | GGATG | 4 cut(s) | 166, 319, 459, 1002 |
| BstH2I | RGCGCY | 1 cut(s) | 576 |
| BstHHI | GCGC | 1 cut(s) | 575 |
| BstKTI | GATC | 3 cut(s) | 457, 796, 893 |
| BstMAI | GTCTC | 3 cut(s) | 59, 556, 804 |
| BstMBI | GATC | 3 cut(s) | 454, 793, 890 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 749 |
| BstNI | CCWGG | 1 cut(s) | 951 |
| BstPI | GGTNACC | 1 cut(s) | 706 |
| BstSCI | CCNGG | 1 cut(s) | 949 |
| BstSFI | CTRYAG | 3 cut(s) | 116, 716, 846 |
| BstV1I | GCAGC | 7 cut(s) | 102, 130, 183, 216, 535, 730, 757 |
| BstV2I | GAAGAC | 1 cut(s) | 607 |
| BstZ17I | GTATAC | 2 cut(s) | 41, 259 |
| Bsu36I | CCTNAGG | 1 cut(s) | 441 |
| BtgI | CCRYGG | 1 cut(s) | 1056 |
| BtsCI | GGATG | 4 cut(s) | 166, 319, 459, 1002 |
| BtsI | GCAGTG | 1 cut(s) | 40 |
| BtsIMutI | CAGTG | 3 cut(s) | 40, 249, 813 |
| CciI | TCATGA | 1 cut(s) | 790 |
| CfoI | GCGC | 1 cut(s) | 575 |
| Csp6I | GTAC | 4 cut(s) | 156, 683, 983, 1094 |
| CviAII | CATG | 6 cut(s) | 226, 596, 643, 767, 791, 1057 |
| CviQI | GTAC | 4 cut(s) | 156, 683, 983, 1094 |
| DdeI | CTNAG | 6 cut(s) | 56, 252, 441, 517, 579, 939 |
| DpnI | GATC | 3 cut(s) | 456, 795, 892 |
| DpnII | GATC | 3 cut(s) | 454, 793, 890 |
| DraI | TTTAAA | 1 cut(s) | 436 |
| Eam1104I | CTCTTC | 2 cut(s) | 471, 725 |
| EarI | CTCTTC | 2 cut(s) | 471, 725 |
| EciI | GGCGGA | 1 cut(s) | 637 |
| Eco130I | CCWWGG | 2 cut(s) | 978, 1056 |
| Eco31I | GGTCTC | 1 cut(s) | 556 |
| Eco47III | AGCGCT | 1 cut(s) | 574 |
| Eco57I | CTGAAG | 1 cut(s) | 601 |
| Eco81I | CCTNAGG | 1 cut(s) | 441 |
| Eco88I | CYCGRG | 1 cut(s) | 559 |
| Eco91I | GGTNACC | 1 cut(s) | 706 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 863 |
| EcoO65I | GGTNACC | 1 cut(s) | 706 |
| EcoRII | CCWGG | 1 cut(s) | 949 |
| EcoT14I | CCWWGG | 2 cut(s) | 978, 1056 |
| ErhI | CCWWGG | 2 cut(s) | 978, 1056 |
| FaeI | CATG | 6 cut(s) | 229, 599, 646, 770, 794, 1060 |
| FaqI | GGGAC | 2 cut(s) | 913, 968 |
| FatI | CATG | 6 cut(s) | 225, 595, 642, 766, 790, 1056 |
| FbaI | TGATCA | 1 cut(s) | 793 |
| FblI | GTMKAC | 3 cut(s) | 40, 258, 327 |
| Fnu4HI | GCNGC | 7 cut(s) | 116, 119, 197, 205, 549, 719, 771 |
| FokI | GGATG | 4 cut(s) | 153, 326, 446, 1009 |
| Fsp4HI | GCNGC | 7 cut(s) | 116, 119, 197, 205, 549, 719, 771 |
| FspBI | CTAG | 4 cut(s) | 159, 231, 555, 830 |
| GlaI | GCGC | 1 cut(s) | 574 |
| GluI | GCNGC | 7 cut(s) | 116, 119, 197, 205, 549, 719, 771 |
| HaeII | RGCGCY | 1 cut(s) | 576 |
| HhaI | GCGC | 1 cut(s) | 575 |
| Hin1II | CATG | 6 cut(s) | 229, 599, 646, 770, 794, 1060 |
| Hin6I | GCGC | 1 cut(s) | 573 |
| HinP1I | GCGC | 1 cut(s) | 573 |
| HindIII | AAGCTT | 1 cut(s) | 1041 |
| HinfI | GANTC | 4 cut(s) | 317, 787, 839, 926 |
| HphI | GGTGA | 3 cut(s) | 368, 757, 1045 |
| Hpy166II | GTNNAC | 5 cut(s) | 41, 259, 328, 683, 1070 |
| Hpy188I | TCNGA | 2 cut(s) | 322, 394 |
| Hpy188III | TCNNGA | 4 cut(s) | 58, 561, 791, 1083 |
| Hpy8I | GTNNAC | 5 cut(s) | 41, 259, 328, 683, 1070 |
| Hpy99I | CGWCG | 1 cut(s) | 514 |
| HpyAV | CCTTC | 4 cut(s) | 346, 367, 415, 829 |
| HpyCH4III | ACNGT | 5 cut(s) | 214, 507, 610, 666, 875 |
| HpyCH4IV | ACGT | 2 cut(s) | 277, 920 |
| HpyCH4V | TGCA | 6 cut(s) | 33, 118, 166, 368, 718, 974 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 749 |
| HpyF3I | CTNAG | 6 cut(s) | 56, 252, 441, 517, 579, 939 |
| HpySE526I | ACGT | 2 cut(s) | 277, 920 |
| Hsp92II | CATG | 6 cut(s) | 229, 599, 646, 770, 794, 1060 |
| HspAI | GCGC | 1 cut(s) | 573 |
| Ksp22I | TGATCA | 1 cut(s) | 793 |
| Kzo9I | GATC | 3 cut(s) | 454, 793, 890 |
| LmnI | GCTCC | 2 cut(s) | 112, 204 |
| Lsp1109I | GCAGC | 7 cut(s) | 102, 130, 183, 216, 535, 730, 757 |
| LweI | GCATC | 2 cut(s) | 175, 589 |
| MaeI | CTAG | 4 cut(s) | 159, 231, 555, 830 |
| MaeII | ACGT | 2 cut(s) | 277, 920 |
| MaeIII | GTNAC | 6 cut(s) | 241, 356, 589, 706, 875, 1046 |
| MalI | GATC | 3 cut(s) | 456, 795, 892 |
| MboI | GATC | 3 cut(s) | 454, 793, 890 |
| MboII | GAAGA | 3 cut(s) | 458, 607, 742 |
| MluCI | AATT | 2 cut(s) | 906, 1086 |
| MlyI | GAGTC | 1 cut(s) | 935 |
| MnlI | CCTC | 9 cut(s) | 129, 186, 247, 316, 474, 613, 726, 859, 905 |
| MseI | TTAA | 6 cut(s) | 92, 144, 237, 384, 435, 495 |
| MslI | CAYNNNNRTG | 4 cut(s) | 171, 1055, 1058, 1061 |
| MspA1I | CMGCKG | 1 cut(s) | 121 |
| MspR9I | CCNGG | 1 cut(s) | 951 |
| MvaI | CCWGG | 1 cut(s) | 951 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 749 |
| NcoI | CCATGG | 1 cut(s) | 1056 |
| NdeII | GATC | 3 cut(s) | 454, 793, 890 |
| NlaIII | CATG | 6 cut(s) | 229, 599, 646, 770, 794, 1060 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| OliI | CACNNNNGTG | 1 cut(s) | 1058 |
| PaeR7I | CTCGAG | 1 cut(s) | 559 |
| PagI | TCATGA | 1 cut(s) | 790 |
| PfeI | GAWTC | 3 cut(s) | 317, 787, 839 |
| PkrI | GCNGC | 7 cut(s) | 117, 120, 198, 206, 550, 720, 772 |
| PleI | GAGTC | 1 cut(s) | 934 |
| PpsI | GAGTC | 1 cut(s) | 934 |
| Psp1406I | AACGTT | 1 cut(s) | 920 |
| Psp6I | CCWGG | 1 cut(s) | 949 |
| PspEI | GGTNACC | 1 cut(s) | 706 |
| PspGI | CCWGG | 1 cut(s) | 949 |
| PstI | CTGCAG | 2 cut(s) | 120, 720 |
| RsaI | GTAC | 4 cut(s) | 157, 684, 984, 1095 |
| RsaNI | GTAC | 4 cut(s) | 156, 683, 983, 1094 |
| RseI | CAYNNNNRTG | 4 cut(s) | 171, 1055, 1058, 1061 |
| SaqAI | TTAA | 6 cut(s) | 92, 144, 237, 384, 435, 495 |
| SatI | GCNGC | 7 cut(s) | 116, 119, 197, 205, 549, 719, 771 |
| Sau3AI | GATC | 3 cut(s) | 454, 793, 890 |
| ScaI | AGTACT | 1 cut(s) | 1095 |
| SchI | GAGTC | 1 cut(s) | 935 |
| ScrFI | CCNGG | 1 cut(s) | 951 |
| SfaNI | GCATC | 2 cut(s) | 175, 589 |
| SfcI | CTRYAG | 3 cut(s) | 116, 716, 846 |
| Sfr274I | CTCGAG | 1 cut(s) | 559 |
| SlaI | CTCGAG | 1 cut(s) | 559 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 171, 1055, 1058, 1061 |
| SmlI | CTYRAG | 2 cut(s) | 293, 559 |
| SmoI | CTYRAG | 2 cut(s) | 293, 559 |
| Sse9I | AATT | 2 cut(s) | 906, 1086 |
| SsiI | CCGC | 4 cut(s) | 121, 202, 622, 743 |
| SspMI | CTAG | 4 cut(s) | 159, 231, 555, 830 |
| StyD4I | CCNGG | 1 cut(s) | 949 |
| StyI | CCWWGG | 2 cut(s) | 978, 1056 |
| TaaI | ACNGT | 5 cut(s) | 214, 507, 610, 666, 875 |
| TaiI | ACGT | 2 cut(s) | 280, 923 |
| TaqI | TCGA | 5 cut(s) | 13, 263, 512, 560, 724 |
| TaqII | GACCGA | 1 cut(s) | 580 |
| TasI | AATT | 2 cut(s) | 906, 1086 |
| TatI | WGTACW | 1 cut(s) | 1093 |
| TfiI | GAWTC | 3 cut(s) | 317, 787, 839 |
| Tru1I | TTAA | 6 cut(s) | 92, 144, 237, 384, 435, 495 |
| Tru9I | TTAA | 6 cut(s) | 92, 144, 237, 384, 435, 495 |
| TscAI | CASTG | 3 cut(s) | 40, 256, 820 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 7 cut(s) | 115, 118, 196, 204, 548, 718, 770 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| TspDTI | ATGAA | 1 cut(s) | 755 |
| TspRI | CASTG | 3 cut(s) | 40, 256, 820 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 863 |
| XhoI | CTCGAG | 1 cut(s) | 559 |
| XmiI | GTMKAC | 3 cut(s) | 40, 258, 327 |
| XspI | CTAG | 4 cut(s) | 159, 231, 555, 830 |
| ZrmI | AGTACT | 1 cut(s) | 1095 |