Rmu_sc0008328.1_g000015

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008328.1
OG0000153
Physical Location & Seq
Reverse (-)
59981 .. 61222
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008328.1_g000015.1.cds

Sequence Viewer

Length: 900 bp
atggctccagaggtatctagtctagtcgatcatcattttgtgcttgaggatgatcttaaaagagagtttaaagggaattttgaaacctccagagatgtcagtcttaagcagatttccaagttacaaattgagagaggggattttccggcagtccccataaactttgagtatccttgtggtttggttacggggttgccgccatgggttgacaatgagctaaaagacgagaccacgagaattagactttcagaggctgctgtcctatcttctgtgttcatctctgctcgctgtgacatcaacagggatgtggagtcccttcgtcattatgttgaagagcgcgtgtttcccttggcaattgcaatagcagcaggcaaaaggttgcctctaggaccaatgtttcttggtcatgtctatcgtttgcttgactacatcgttgttgacgaattagatagtgttgttcggtgcggagttactactttggtttctaccacctttatgcaagtattcatctgggaatggttcaaaggactaaaggtggagcctctgaccatgagtctatccttggaattgtacaacaacgacaaggaaggtagcaagcaagcacagactgaatatttgccgccggtacttcctctgctgtgtcgctggttcaaaaggagacaagataagacagtgtttgccccgagtatgttggatgatgtaagtaatttcatttggcagccctatctccagccttctgagtttgagaccttttcattttctggtagagaagggcagtgtgctacggctcttggtcgtgttgagctctacttgactatttgcccaaattttatccaatccatcagcgaggataagaaggacttgaatttttcactgttgtttattctcctgatagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

299

Amino Acids

34.27

Weight (kDa)

5.0

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 197, 465, 620
AcsI RAATTY 3 cut(s) 76, 826, 865
AfaI GTAC 2 cut(s) 572, 627
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 5 cut(s) 83, 332, 523, 652, 865
AhdI GACNNNNNGTC 1 cut(s) 552
AluBI AGCT 2 cut(s) 217, 805
AluI AGCT 2 cut(s) 217, 805
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 3 cut(s) 221, 652, 740
AlwNI CAGNNNCTG 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 682
ApeKI GCWGC 3 cut(s) 254, 365, 718
ApoI RAATTY 3 cut(s) 76, 826, 865
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 807
BauI CACGAG 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 241, 377, 730
BccI CCATC 1 cut(s) 848
BceAI ACGGC 1 cut(s) 801
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 221, 652, 740
BfaI CTAG 3 cut(s) 18, 23, 386
BfrI CTTAAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 180
BisI GCNGC 5 cut(s) 197, 255, 366, 620, 719
BlsI GCNGC 5 cut(s) 198, 256, 367, 621, 720
Bme18I GGWCC 1 cut(s) 389
BmeRI GACNNNNNGTC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 6, 540
BpmI CTGGAG 2 cut(s) 73, 713
BpuEI CTTGAG 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 221, 740
BsaJI CCNNGG 3 cut(s) 200, 348, 561
Bse118I RCCGGY 1 cut(s) 622
BseDI CCNNGG 3 cut(s) 200, 348, 561
BseGI GGATG 3 cut(s) 55, 310, 700
BseMII CTCAG 1 cut(s) 729
BseXI GCAGC 3 cut(s) 241, 377, 730
Bsh1236I CGCG 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 2 cut(s) 146, 623
BslFI GGGAC 2 cut(s) 137, 298
BsmAI GTCTC 3 cut(s) 221, 652, 740
BsmFI GGGAC 2 cut(s) 137, 298
Bso31I GGTCTC 2 cut(s) 221, 740
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 807
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 28, 52
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 3 cut(s) 197, 465, 620
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 6, 540
BspQI GCTCTTC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 2 cut(s) 221, 740
BsrFI RCCGGY 1 cut(s) 622
BsrGI TGTACA 1 cut(s) 570
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 3 cut(s) 200, 348, 561
BssMI GATC 2 cut(s) 28, 52
BssSI CACGAG 1 cut(s) 232
BssT1I CCWWGG 3 cut(s) 200, 348, 561
Bst2BI CACGAG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 673, 876
Bst6I CTCTTC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 4 cut(s) 286, 370, 596, 600
BstDEI CTNAG 1 cut(s) 738
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 55, 310, 700
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 2 cut(s) 31, 55
BstMAI GTCTC 3 cut(s) 221, 652, 740
BstMBI GATC 2 cut(s) 28, 52
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 241, 377, 730
BsuI GTATCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 3 cut(s) 55, 310, 700
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 678, 782, 872
Cac8I GCNNGC 4 cut(s) 286, 370, 596, 600
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 2 cut(s) 571, 626
CviAII CATG 3 cut(s) 201, 407, 550
CviJI RGCY 8 cut(s) 5, 217, 254, 541, 721, 733, 788, 805
CviKI_1 RGCY 8 cut(s) 5, 217, 254, 541, 721, 733, 788, 805
CviQI GTAC 2 cut(s) 571, 626
DdeI CTNAG 1 cut(s) 738
DpnI GATC 2 cut(s) 30, 54
DpnII GATC 2 cut(s) 28, 52
DraI TTTAAA 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 3 cut(s) 200, 348, 561
Eco24I GRGCYC 1 cut(s) 807
Eco31I GGTCTC 2 cut(s) 221, 740
Eco47I GGWCC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 805
EcoT14I CCWWGG 3 cut(s) 200, 348, 561
EcoT38I GRGCYC 1 cut(s) 807
ErhI CCWWGG 3 cut(s) 200, 348, 561
FaeI CATG 3 cut(s) 204, 410, 553
FaiI YATR 7 cut(s) 158, 202, 327, 408, 497, 551, 689
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 2 cut(s) 137, 298
FatI CATG 3 cut(s) 200, 406, 549
Fnu4HI GCNGC 5 cut(s) 197, 255, 366, 620, 719
FokI GGATG 3 cut(s) 62, 317, 707
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 5 cut(s) 197, 255, 366, 620, 719
FspBI CTAG 3 cut(s) 18, 23, 386
GlaI GCGC 1 cut(s) 338
GluI GCNGC 5 cut(s) 197, 255, 366, 620, 719
GsuI CTGGAG 2 cut(s) 73, 713
HapII CCGG 2 cut(s) 146, 623
HhaI GCGC 1 cut(s) 339
Hin1II CATG 3 cut(s) 204, 410, 553
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 2 cut(s) 208, 439
HindII GTYRAC 2 cut(s) 208, 439
HinfI GANTC 2 cut(s) 311, 553
HpaII CCGG 2 cut(s) 146, 623
Hpy166II GTNNAC 2 cut(s) 208, 439
Hpy188I TCNGA 3 cut(s) 250, 546, 739
Hpy188III TCNNGA 3 cut(s) 8, 90, 889
Hpy8I GTNNAC 2 cut(s) 208, 439
HpyAV CCTTC 5 cut(s) 326, 581, 744, 764, 850
HpyCH4III ACNGT 2 cut(s) 673, 876
HpyCH4V TGCA 2 cut(s) 359, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 738
Hsp92II CATG 3 cut(s) 204, 410, 553
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 28, 52
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 10, 538
Lsp1109I GCAGC 3 cut(s) 241, 377, 730
MaeI CTAG 3 cut(s) 18, 23, 386
MaeIII GTNAC 4 cut(s) 120, 184, 290, 469
MalI GATC 2 cut(s) 30, 54
MboI GATC 2 cut(s) 28, 52
MboII GAAGA 2 cut(s) 258, 344
MfeI CAATTG 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 9 cut(s) 76, 126, 237, 354, 443, 566, 706, 826, 865
MlyI GAGTC 2 cut(s) 320, 562
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 9 cut(s) 4, 40, 97, 128, 244, 393, 552, 642, 841
MseI TTAA 3 cut(s) 57, 69, 105
MslI CAYNNNNRTG 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 146, 623
MunI CAATTG 1 cut(s) 354
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 365
NcoI CCATGG 1 cut(s) 200
NdeII GATC 2 cut(s) 28, 52
NlaIII CATG 3 cut(s) 204, 410, 553
NlaIV GGNNCC 2 cut(s) 6, 540
NmuCI GTSAC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PkrI GCNGC 5 cut(s) 198, 256, 367, 621, 720
PleI GAGTC 2 cut(s) 319, 561
PpsI GAGTC 2 cut(s) 319, 561
Psp124BI GAGCTC 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 6, 540
PspPI GGNCC 1 cut(s) 389
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 572, 627
RsaNI GTAC 2 cut(s) 571, 626
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 3 cut(s) 57, 69, 105
SatI GCNGC 5 cut(s) 197, 255, 366, 620, 719
Sau3AI GATC 2 cut(s) 28, 52
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 2 cut(s) 320, 562
SduI GDGCHC 1 cut(s) 807
SetI ASST 9 cut(s) 15, 89, 219, 380, 494, 537, 592, 752, 807
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 44, 104
SmoI CTYRAG 2 cut(s) 44, 104
Sse9I AATT 9 cut(s) 76, 126, 237, 354, 443, 566, 706, 826, 865
SsiI CCGC 3 cut(s) 197, 465, 620
SspI AATATT 1 cut(s) 614
SspMI CTAG 3 cut(s) 18, 23, 386
SstI GAGCTC 1 cut(s) 807
StyI CCWWGG 3 cut(s) 200, 348, 561
TaaI ACNGT 2 cut(s) 673, 876
TaqI TCGA 1 cut(s) 27
TasI AATT 9 cut(s) 76, 126, 237, 354, 443, 566, 706, 826, 865
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 199, 622
Tru1I TTAA 3 cut(s) 57, 69, 105
Tru9I TTAA 3 cut(s) 57, 69, 105
TscAI CASTG 3 cut(s) 678, 782, 879
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 254, 365, 718
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 265, 496, 700, 744
TspRI CASTG 3 cut(s) 678, 782, 879
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 3 cut(s) 76, 826, 865
XspI CTAG 3 cut(s) 18, 23, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.